mRNA_C-linearis_contig79.15383.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig79.15383.1
Unique NamemRNA_C-linearis_contig79.15383.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig79.15383.1 vs. uniprot
Match: A0A6H5J7N0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7N0_9PHAE)

HSP 1 Score: 412 bits (1058), Expect = 1.500e-144
Identity = 202/230 (87.83%), Postives = 209/230 (90.87%), Query Frame = 1
Query:    1 MGNKPPGPPPPSGERATRCKELFMLKNENVEGFWEVFKQFDLKREGLISRQAFFEGIIQEERNDFGNAIFTLVDPEDEEMLEFGEFVQAVCTFCCFCVTDMLKFCFMVYDKDRSGLMEIEELHHFIKVLHSANVSNNIQGAISHLQLDEHGRLPFDSFKIMNKNFPQVLYPVFRLQQSTQRAVLGIKWWKKKVNELDFWRENREHVEQTEKLKEAKKKERQRNAQIRKGT 690
            MGNK PGPPPPSGER  RCKELFML NEN+E  WEVFKQFDLKREGLISRQAFFEGIIQEERN+FGNAIFTLVDPEDEE LEFGEFVQAVCTFCCFCVTDMLKFCFMVYDKDRSGLMEIEELHHFIKVLHS+NV+NNIQGA+SHLQLDEHGRLPFDSFKIMNKNFPQVLYPVFRLQQSTQRA+LG KWWK KVNEL FWRENREH           +KERQRNAQIRKGT
Sbjct:    1 MGNKIPGPPPPSGERVARCKELFMLTNENIEALWEVFKQFDLKREGLISRQAFFEGIIQEERNEFGNAIFTLVDPEDEETLEFGEFVQAVCTFCCFCVTDMLKFCFMVYDKDRSGLMEIEELHHFIKVLHSSNVTNNIQGAMSHLQLDEHGRLPFDSFKIMNKNFPQVLYPVFRLQQSTQRAILGNKWWKNKVNELGFWRENREHXXXXXXXXXXXRKERQRNAQIRKGT 230          
BLAST of mRNA_C-linearis_contig79.15383.1 vs. uniprot
Match: D8LMG3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMG3_ECTSI)

HSP 1 Score: 331 bits (849), Expect = 1.020e-113
Identity = 157/170 (92.35%), Postives = 165/170 (97.06%), Query Frame = 1
Query:   70 MLKNENVEGFWEVFKQFDLKREGLISRQAFFEGIIQEERNDFGNAIFTLVDPEDEEMLEFGEFVQAVCTFCCFCVTDMLKFCFMVYDKDRSGLMEIEELHHFIKVLHSANVSNNIQGAISHLQLDEHGRLPFDSFKIMNKNFPQVLYPVFRLQQSTQRAVLGIKWWKKKV 579
            ML NEN+E  WEVFKQFDLKREGLISRQAFFEGIIQEERN+FGNAIFTLVDPEDEE LEFGEFVQAVCTFCCFCVTDMLKFCFMVYDKDRSGLME+EELHHFIKVLHS+NV+NNIQGA+SHLQLDEHGRLPFDSFKIMNKNFPQVLYPVFRLQQSTQRA+LG KWWKKK+
Sbjct:    1 MLTNENIEALWEVFKQFDLKREGLISRQAFFEGIIQEERNEFGNAIFTLVDPEDEETLEFGEFVQAVCTFCCFCVTDMLKFCFMVYDKDRSGLMEMEELHHFIKVLHSSNVTNNIQGAMSHLQLDEHGRLPFDSFKIMNKNFPQVLYPVFRLQQSTQRAILGNKWWKKKM 170          
BLAST of mRNA_C-linearis_contig79.15383.1 vs. uniprot
Match: A0A835Z730_9STRA (EF-hand domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z730_9STRA)

HSP 1 Score: 198 bits (504), Expect = 3.960e-61
Identity = 91/171 (53.22%), Postives = 128/171 (74.85%), Query Frame = 1
Query:  100 WEVFKQFDLKREGLISRQAFFEGIIQEERNDFGNAIFTLVDPEDEEMLEFGEFVQ-AVCTFCCFCVTDMLKFCFMVYDKDRSGLMEIEELHHFIKVLHSANVSNNIQGAISHLQLDEHGRLPFDSFKIMNKNFPQVLYPVFRLQQSTQRAVLGIKWWKKKVNELDFWRENR 609
            W++FK+ D   +G IS   +F+ ++ E ++  G A+F L+D +D + +EFGEFVQ AVCTF C    +ML+F FMVYDKD+SG+ME+E+LH FI  LH+++VSNN+Q A+  L LDE GRLPFDSFK++NK +PQV+YP+FRLQQ+T R V+G KWW  K+  L++ R +R
Sbjct:    1 WDIFKRHDTTHDGYISVDTYFDKVVFEPKSTVGQALFALIDTDDPDKIEFGEFVQQAVCTFACLSPAEMLRFAFMVYDKDKSGVMEVEQLHDFIWKLHNSDVSNNVQHAMQDLTLDELGRLPFDSFKLLNKQYPQVMYPLFRLQQNTMRFVMGPKWWASKLRRLEYERVHR 171          
BLAST of mRNA_C-linearis_contig79.15383.1 vs. uniprot
Match: A0A7S2D7S8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D7S8_9STRA)

HSP 1 Score: 174 bits (442), Expect = 3.620e-50
Identity = 87/227 (38.33%), Postives = 137/227 (60.35%), Query Frame = 1
Query:    1 MGNKPPGPPPPSGERATRCKELFMLKNENVEGFWEVFKQFDLKREGLISRQAFFEGIIQEERNDFGNAIFTLVDPEDEEMLEFGEFVQAVCTFCCFCVTDMLKFCFMVYDKDRSGLMEIEELHHFIKVLHSANVSNNIQGAISHLQLDEHGRLPFDSFKIMNKNFPQVLYPVFRLQQSTQRAVLGIKWWKKKVNELDFWRENREHVEQTEKLKEAKKKERQRNAQIR 681
            MGN      P + +R  R  E+  L   +++GFW VF++ D  R G+++ + FF  I+QE RN FGNAIF L+D ED + LEFGEF+Q V T+CCF   ++L+FCF ++D++++G ++ +EL  F+ VLH+     N++ A   ++    G+  F  F+ +NK+FP VLYP FR+QQ+    ++G  WW++K   L   +E++         +E   +ER R  QIR
Sbjct:    1 MGNS----APVADDRVQRAAEMVKLNVSDIKGFWNVFRKCDYDRIGIVATEDFFTKIVQEGRNMFGNAIFELIDAEDPDKLEFGEFLQGVVTYCCFDELEILQFCFFIFDREKNGYIDQDELKFFVDVLHNEQQVANVRTAFQSIKFQTDGKFDFPEFQKLNKDFPTVLYPAFRMQQNMMLNIMGEDWWRQKKLMLTLDKEDQRSAHARMMRREFNNRERTRQKQIR 223          
BLAST of mRNA_C-linearis_contig79.15383.1 vs. uniprot
Match: A0A2R5GWK3_9STRA (Calmodulin-like protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GWK3_9STRA)

HSP 1 Score: 154 bits (390), Expect = 8.200e-42
Identity = 80/227 (35.24%), Postives = 135/227 (59.47%), Query Frame = 1
Query:    1 MGNKPPGPPPPSGERATRCKELFMLKNENVEGFWEVFKQFDLKREGLISRQAFFEGIIQEERNDFGNAIFTLVDPEDEEMLEFGEFVQAVCTFCCFCVTDMLKFCFMVYDKDRSGLMEIEELHHFIKVLHSANVSNNIQGAISHLQLDEHGRLPFDSFKIMNKNFPQVLYPVFRLQQSTQRAVLGIKWWKKKVNELDFWRENREHVEQTEKLKEAKKKERQRNAQIR 681
            MGNK P P     +R  +  ++  L  + +  FW +F+++D    G I  + F+  +I+EER  FG+++F LVD +    L+F EFVQ + T+  F   D+LKFCF V+DKD++G ++ +ELH  +++LH  N ++N + A+++   +  G++ F+ F+ MN  FPQ+L+P FR+QQ+     LG +WW  K   L   R     +E+  +LKE +++ R +  Q+R
Sbjct:    1 MGNKIPVP----DDRLQKTIDMLKLSKKEINKFWRIFQKYDRDHGGTIDVEEFYR-LIEEERTVFGDSLFELVDIDCSGTLDFSEFVQTIATYALFARVDILKFCFFVFDKDKNGYIDSDELHALVEMLHGNNPTSNCRTALANFDTNSDGKIDFEEFQAMNVRFPQLLHPAFRMQQNMMINTLGEQWWNGKKLMLQEERNADNALEERLRLKELQRQHRNQQRQVR 222          
BLAST of mRNA_C-linearis_contig79.15383.1 vs. uniprot
Match: A0A7S1UH45_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UH45_9STRA)

HSP 1 Score: 141 bits (356), Expect = 8.390e-38
Identity = 78/209 (37.32%), Postives = 116/209 (55.50%), Query Frame = 1
Query:    1 MGNKPPGPPPPSGERATRCKELFMLKNENVEGFWEVFKQFDLKREGLISRQAFFEGII--QEERNDFGNAIFTLVDPEDEEMLEFGEFVQAVCTFCCFCVTDMLKFCFMVYDKDRSGLMEIEELHHFIKVLHSANVSNNIQGAISHLQLDEHGRLPFDSFKIMNKNFPQVLYPVFRLQQSTQRAVLGIKWWKKKVNELDFWRENREHVE 621
            MG     PP    ER  +  +   + +  +   W+ F+ +D    G IS+  FF  I   +E   DFGNAI  L D +DE  L+FG+F Q   TF  F   +ML+FCF V+DKD++G M+ +EL+ F+  ++   V +NI   I  L  DE GRL +  F  M++ FP VLYPVF+ Q + +  V+G KWW +++  L   R+++E  E
Sbjct:    1 MGGGHSHPPIDDDERILKVVDTLEMTSNEIGMLWDAFRAYDHNAVGSISKIDFFCNICDQREWETDFGNAILELCDVKDEGTLDFGQFTQICGTFGAFQTKEMLQFCFFVFDKDKNGHMDEDELNAFVADIYGNAVPSNILSVIKGLNFDEDGRLYYPQFAAMHRQFPAVLYPVFQFQTNLRTNVMGAKWWNQRLARLRMDRDDKEAEE 209          
BLAST of mRNA_C-linearis_contig79.15383.1 vs. uniprot
Match: A0A7S2C3E2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C3E2_9STRA)

HSP 1 Score: 135 bits (339), Expect = 1.760e-34
Identity = 73/223 (32.74%), Postives = 122/223 (54.71%), Query Frame = 1
Query:   28 PPSGERATRCKELFMLKNENVEGFWEVFKQFDLKREGLISRQAFFEGIIQEERNDFGNAIFTLVDPEDEEMLEFGEFVQAVCTFCCFCVTDMLKFCFMVYDKDRSGLMEIEELHHFIKVLHSANVSNNIQG----AISHLQLDEHGRLPFDSFKIMNKNFPQVLYPVFRLQQSTQRAVLGIKWWKKKVNELDFWRENREHVEQTEKLKEAKKKERQRNAQIRK 684
            P    R  +  EL  +  + +  FW  F+  D K  G +    F++   +E+R+ FG+AIF L+D      L+FGEFV AV T+C F   +ML+FCF ++DKD++G +E EEL   + +L+    ++ ++G    A+  L  ++ G++ F  FK  N++FP + YP FR+Q +    + G  WW+KK   L   ++ +   E+  K KE  +  + +  +IRK
Sbjct:    8 PTPDSRTLKAMELGHINMKELGIFWSAFRSIDKKLTGSVDISDFYK-FFEEKRSIFGDAIFELIDCNQSGSLDFGEFVHAVVTYCLFEQDEMLRFCFYIFDKDKNGYIEQEELRWMVNILYGLGPTDKLKGNTKVAVDRLDFNDDGKVDFKEFKEFNRSFPALFYPAFRIQVNMINLIAGDAWWEKKKRWLQDEKDRKRAREEYSKRKEKARLRKMQQRKIRK 229          
BLAST of mRNA_C-linearis_contig79.15383.1 vs. uniprot
Match: A0A6A3K789_9STRA (Uncharacterized protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3K789_9STRA)

HSP 1 Score: 134 bits (336), Expect = 4.570e-34
Identity = 68/178 (38.20%), Postives = 108/178 (60.67%), Query Frame = 1
Query:   55 CKELFMLKNENVEGFWEVFKQFDLKREGLISRQAFFEGIIQEERNDFGNAIFTLVDPEDEEMLEFGEFVQAVCTFCCFCVTDMLKFCFMVYDKDRSGLMEIEELHHFIKVLHSANVSNNIQGAISHLQLDEHGRLPFDSFKIMNKNFPQVLYPVFRLQQSTQRAVLGIKWWKKKVNEL 588
             K+L +L         EV +    K  G I R  F+  I  E+ ++FG+AIF L+D ++  +L+F E+V+A+  FC     DMLKFCF V+D D++G +E EEL H +++LH+   ++N++ A+     +  G++ F  FK +N  FP +LYP FR+QQ+ +   LG KWW++K+ EL
Sbjct:   27 AKDLRVLYGRFSRYDKEVLRSLTCKS-GTIDRSEFYTSI-DEKHSEFGDAIFALIDEDNSGVLDFSEYVEALGKFCLLNKEDMLKFCFNVFDDDKNGTIEGEELTHLLEILHADEQTSNMKHALKTFDFNGDGKIDFAEFKQLNTQFPSLLYPAFRIQQNMKIFTLGEKWWERKIEEL 202          
BLAST of mRNA_C-linearis_contig79.15383.1 vs. uniprot
Match: G5ADU9_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5ADU9_PHYSP)

HSP 1 Score: 133 bits (335), Expect = 3.730e-32
Identity = 63/153 (41.18%), Postives = 99/153 (64.71%), Query Frame = 1
Query:  130 REGLISRQAFFEGIIQEERNDFGNAIFTLVDPEDEEMLEFGEFVQAVCTFCCFCVTDMLKFCFMVYDKDRSGLMEIEELHHFIKVLHSANVSNNIQGAISHLQLDEHGRLPFDSFKIMNKNFPQVLYPVFRLQQSTQRAVLGIKWWKKKVNEL 588
            + G I R  F+  I  E+ ++FG+AIF L+D ++  +L+F E+V+A+  FC     DMLKFCF V+D DR+G +E EEL H + +LH+   ++N++ A+     +  G++ F  FK +N  FP +LYP FR+QQ+ +   LG KWW++K+ EL
Sbjct:  559 KSGTIDRSEFYASI-DEKHSEFGDAIFALIDEDNSGVLDFSEYVEALGKFCLLNKEDMLKFCFNVFDDDRNGTIEGEELTHLLDILHADEQTSNMKHALKTFDFNGDGKIDFAEFKQLNTQFPSLLYPAFRIQQNMKIFTLGEKWWERKIEEL 710          
BLAST of mRNA_C-linearis_contig79.15383.1 vs. uniprot
Match: A0A024TD15_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TD15_9STRA)

HSP 1 Score: 126 bits (317), Expect = 2.240e-31
Identity = 74/229 (32.31%), Postives = 123/229 (53.71%), Query Frame = 1
Query:   28 PPSGERATRCKELFMLKNENVEGFWEVF-------------KQFDLKREGLISRQAFFEGIIQEERNDFGNAIFTLVDPEDEEMLEFGEFVQAVCTFCCFCVTDMLKFCFMVYDKDRSGLMEIEELHHFIKVLHSANVSNNIQGAISHLQLDEHGRLPFDSFKIMNKNFPQVLYPVFRLQQSTQRAVLGIKWWKKKVNELDFWRENREHVEQTE----KLKEAKKKERQ 663
            P   ER  +  E   L   ++   ++ F             +  D    G I+R  FF    +EER   G+A+F L+D ++   L+F E+V+A+  FC     ++LKFCF V+D+D++G +E  EL   +++LH+ N ++N+  A+     +  G++ F  F+I+N+ FP +LYPV+RLQQS +   +G  WW K+   L   ++ RE+ + T     K KE ++K RQ
Sbjct:    8 PAPDERMLKTIEKLQLNESDLRTLYKRFSNSSPRFQRGLLMRSLDHSNSGSINRTEFFRSF-REERTAVGDAVFALIDIDNSGQLDFSEYVEALGAFCLLNTDEVLKFCFFVFDQDKNGTIEGMELDALLEMLHADNATSNMAAAMDKFDFNGDGKVDFREFQILNQQFPTLLYPVYRLQQSMKVHSMGEAWWNKRATLLSQLKDLRENGDATALAAAKAKEQRRKTRQ 235          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig79.15383.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J7N0_9PHAE1.500e-14487.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMG3_ECTSI1.020e-11392.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z730_9STRA3.960e-6153.22EF-hand domain-containing protein (Fragment) n=1 T... [more]
A0A7S2D7S8_9STRA3.620e-5038.33Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A2R5GWK3_9STRA8.200e-4235.24Calmodulin-like protein n=1 Tax=Hondaea fermentalg... [more]
A0A7S1UH45_9STRA8.390e-3837.32Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2C3E2_9STRA1.760e-3432.74Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A6A3K789_9STRA4.570e-3438.20Uncharacterized protein n=2 Tax=Phytophthora rubi ... [more]
G5ADU9_PHYSP3.730e-3241.18Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A024TD15_9STRA2.240e-3132.31Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig79contigC-linearis_contig79:66386..69207 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score334.0
Seed ortholog evalue5.7e-89
Seed eggNOG ortholog2880.D8LMG3
KEGG rclassRC00002,RC00017
KEGG koko:K04718,ko:K06268
KEGG ReactionR01926,R02976
KEGG Pathwayko00600,ko01100,ko04010,ko04020,ko04022,ko04071,ko04072,ko04114,ko04218,ko04310,ko04360,ko04370,ko04371,ko04380,ko04650,ko04658,ko04659,ko04660,ko04662,ko04666,ko04720,ko04724,ko04921,ko04922,ko04924,ko05010,ko05014,ko05031,ko05152,ko05166,ko05167,map00600,map01100,map04010,map04020,map04022,map04071,map04072,map04114,map04218,map04310,map04360,map04370,map04371,map04380,map04650,map04658,map04659,map04660,map04662,map04666,map04720,map04724,map04921,map04922,map04924,map05010,map05014,map05031,map05152,map05166,map05167
KEGG ModuleM00100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ca2 -binding protein (EF-Hand superfamily
EggNOG OGsCOG5126@1,KOG0034@2759
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-05_002650.1
EC2.7.1.91
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01009
Exons7
Model size690
Cds size690
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930488.9623325-CDS-C-linearis_contig79:66385..664581622930488.9623325-CDS-C-linearis_contig79:66385..66458Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 66386..66458 +
1690881095.6825259-CDS-C-linearis_contig79:66385..664581690881095.6825259-CDS-C-linearis_contig79:66385..66458Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 66386..66458 +
1622930488.9797187-CDS-C-linearis_contig79:66661..667161622930488.9797187-CDS-C-linearis_contig79:66661..66716Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 66662..66716 +
1690881095.7010431-CDS-C-linearis_contig79:66661..667161690881095.7010431-CDS-C-linearis_contig79:66661..66716Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 66662..66716 +
1622930488.9982686-CDS-C-linearis_contig79:67222..673451622930488.9982686-CDS-C-linearis_contig79:67222..67345Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 67223..67345 +
1690881095.714214-CDS-C-linearis_contig79:67222..673451690881095.714214-CDS-C-linearis_contig79:67222..67345Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 67223..67345 +
1622930489.0138247-CDS-C-linearis_contig79:67824..679541622930489.0138247-CDS-C-linearis_contig79:67824..67954Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 67825..67954 +
1690881095.7264962-CDS-C-linearis_contig79:67824..679541690881095.7264962-CDS-C-linearis_contig79:67824..67954Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 67825..67954 +
1622930489.0633388-CDS-C-linearis_contig79:68242..683381622930489.0633388-CDS-C-linearis_contig79:68242..68338Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 68243..68338 +
1690881095.7358508-CDS-C-linearis_contig79:68242..683381690881095.7358508-CDS-C-linearis_contig79:68242..68338Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 68243..68338 +
1622930489.080551-CDS-C-linearis_contig79:68780..688791622930489.080551-CDS-C-linearis_contig79:68780..68879Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 68781..68879 +
1690881095.7474818-CDS-C-linearis_contig79:68780..688791690881095.7474818-CDS-C-linearis_contig79:68780..68879Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 68781..68879 +
1622930489.1003976-CDS-C-linearis_contig79:69093..692071622930489.1003976-CDS-C-linearis_contig79:69093..69207Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 69094..69207 +
1690881095.7570312-CDS-C-linearis_contig79:69093..692071690881095.7570312-CDS-C-linearis_contig79:69093..69207Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 69094..69207 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig79.15383.1prot_C-linearis_contig79.15383.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig79 66386..69207 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig79.15383.1

>prot_C-linearis_contig79.15383.1 ID=prot_C-linearis_contig79.15383.1|Name=mRNA_C-linearis_contig79.15383.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=230bp
MGNKPPGPPPPSGERATRCKELFMLKNENVEGFWEVFKQFDLKREGLISR
QAFFEGIIQEERNDFGNAIFTLVDPEDEEMLEFGEFVQAVCTFCCFCVTD
MLKFCFMVYDKDRSGLMEIEELHHFIKVLHSANVSNNIQGAISHLQLDEH
GRLPFDSFKIMNKNFPQVLYPVFRLQQSTQRAVLGIKWWKKKVNELDFWR
ENREHVEQTEKLKEAKKKERQRNAQIRKGT
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mRNA from alignment at C-linearis_contig79:66386..69207+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig79.15383.1 ID=mRNA_C-linearis_contig79.15383.1|Name=mRNA_C-linearis_contig79.15383.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2822bp|location=Sequence derived from alignment at C-linearis_contig79:66386..69207+ (Chordaria linearis ClinC8C monoicous)
ATGGGCAATAAACCACCTGGTCCCCCGCCACCTTCAGGAGAGAGGGCTAC ACGATGCAAGGAACTTTTCATGCGTGAGTTCAGAGTTGACTCACAGCAGT GAGAAGGAGATCATGATTCCAAACACCCTTCGTCCCACGGAGCCAAACTT GTACTCGTTATTCAGGCTATTGTGGGCAATCCACTGCTGCTGCTGTTAAT TACAGATTTTTGCTGCAACAATACATGTCACTCAAACGTCTGTGCGAAAA CAACACCGCACCCTGGGCTCCTGCAGTTAAGAACGAGAACGTCGAAGGCT TTTGGGAGGTCTTCAAGCAGTTTGATCTGAAGTGAGTATTATTATGCGTG TACTAGTAGTGTGCATAGGACCCTGTAAGGAAGCCAAGAAGTAATTAGTA TTTGTCGTCTTTCTAATACAGGAAACGAAGACCAGCTCGTGCGGGTGTTT TCTATACTTCAAGTACGCGGGTTCCAAAAATGAAAAAAAAATGCCTGCAA GCTGTGATTTCATCAGTAAGACTAAACATATTATAGTTAGTCTACATAAA TACTCCAAGTACGTTGTGACTTGAAGTGCTCTTTCGACCTGGGCAAGCTT TTGTACTATAATCTTCTACCTGCTTCTAATGAAGGATGGACTGAAGATGT TGTTTTCTCTCAAAGGGCATCTGCTTGCACAGGTCCGAAGTACAGCACAA AGTATGCAGGGATAAACGTAGAAAATGCAACTCATGTTTTTTTAGCTTGC TGCCGCCGTCCAACTCCGTGCGACGTAACACTTAAATTTCTCCTCGGTGT ACTAGAAGGACTCGCCTCTTTCTCTTTGTGATCACAGGCGCGAGGGCTTG ATAAGCAGACAGGCCTTTTTCGAGGGTATTATCCAGGAAGAAAGGAACGA TTTCGGAAACGCAATTTTTACACTTGTCGACCCTGAGGACGAGGAAATGC TTGAATTTGGGTGAGTTGGCACGGACAAGAATCTATCTGGACACGAAACT TTCCCCTCTGCAAAACAATATGCATGCGGTGACAAACGATTTTTAGTATG CCGAACGTGGTCTGATGTAGACGAGCAACCCGATCTCTCAGAAAGATGGC ACAACAGCGTGAAGAACAAACGTGTTACACCCTGATGGTGGACTTCTTCT GAGGATCCCAGTTGTTTTTTATTTTGGGCGATACACTGCTTGCTGCTGTA GTCTTACCATATGAAGAAATTAGCTCGCCCTGTGTACATTGGTTTACAAT TCCAATCACGCGACGACACAAAAGCAACGAGCGAAAAAACTTGGTTGGTT GCTCGCACATAGCTCCATGCGAACAGCCGGGAGCTTGGGTGCTGTTCGAA CGAGTGAAAAAGCAGGGAATTCACTGCTCGCGACTATCTCCTCTCGCTTT CTTCGTCACCTGTCGGCTCCTTGGGCTCGCTCGAGGCAGCGAATTTGTTC AGGCAGTGTGCACCTTTTGCTGCTTTTGCGTGACGGACATGCTCAAGTTT TGCTTCATGGTTTACGACAAGGACCGATCCGGACTCATGGAAATTGAAGA GTTACACCATTTTATCAAGGTGTGTTTTGTACTTTGTAATGCACAAGAAA CGCGACGACTTTACATTCGCTTAATGAAAACTGCAGTAGTTATCCTGAGC GTGGCAGGGGTGATCGAATGGCATTGTCGGGAAGGGTGACTGCAGTAGTC TTCGTAGATCGAGACAAACTTCTTAACTCGTTCTGGGACAAGGGTATCAG CACGTGCAAGTATTGAAACTCCAACCACCACCTGTGTACACCTCAAATGT GATACTTCCCTAAAGTATATCCAACGCACCGGGTCACATCGGTACTTGGT GGACCAGGTGCTTCACAGCGCCAACGTATCGAACAACATCCAGGGTGCCA TATCACACTTGCAGCTAGACGAGCACGGAAGGCTTCCATTCGATAGTTTC AAGGTGTGTCACTGGCGGCGTCCATCGGTTACGGTATCGTGGAGGTCATC ATTGCTACTGATAATTCCAGGTGTTGAAAGAGGGGATACTCGAAAGTTTA GATGGACGCAAAGAGGCGGGAATCGGAGGGTTGAGTACGTGCTACGGGGA CGTTTTTCCTGGGACCACGAGCGTATCTGACGCGAAACTTGGCTTCAAAA TCCCTTATGGCATGCATACCAGCGCTCCGAGATGGAAACGCCCAACTATA CGTGAGCGTGGTCGTGAAGTTTAAACAGCGCTATTCATCTTGGGAAGAAC TCGGGCGAAGATCTAGGCCGTATACCTACACTTTGGGTGAGAAAAATGGT GGCAGTCCTATTTTCTAGCTATGTGTGGTCCTGGTTTTGTACCTGCCCCC CTCTCTTGTTGAAGTGCGCGCTCTGTGCTGTTCCCCTTTCGCCAGATCAT GAACAAGAACTTTCCTCAAGTTCTTTATCCCGTCTTTCGGTTGCAGCAAT CAACACAGCGGGCTGTCCTAGGCATCAAGTGGTGGAAGAAGAAGGTGACA AACTCTGGGCGAAAAAAGGCAGCGCATACATCGACTGAGGTTACGAGTGT AGGGAGGCATACATGTGTTTTTCGTGGGCACGTCATAGATGATAACCTTG CCCCGCGTAGGTGGCTTTTCTCGAGAATAACAGCCTCTTGCCCTCGCAGT CAATCGTAGCTCTCACGGCGTTACAGATCAACAACCCATAAACCGCCCTA ATCGGTAGGTGAATGAGCTAGACTTTTGGAGAGAAAATAGGGAGCACGTG GAGCAAACGGAAAAGTTGAAGGAAGCGAAGAAAAAGGAACGACAGCGAAA TGCGCAGATAAGAAAAGGTACG
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Coding sequence (CDS) from alignment at C-linearis_contig79:66386..69207+

>mRNA_C-linearis_contig79.15383.1 ID=mRNA_C-linearis_contig79.15383.1|Name=mRNA_C-linearis_contig79.15383.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1380bp|location=Sequence derived from alignment at C-linearis_contig79:66386..69207+ (Chordaria linearis ClinC8C monoicous)
ATGGGCAATAAACCACCTGGTCCCCCGCCACCTTCAGGAGAGAGGGCTAC
ACGATGCAAGGAACTTTTCATGCATGGGCAATAAACCACCTGGTCCCCCG
CCACCTTCAGGAGAGAGGGCTACACGATGCAAGGAACTTTTCATGCTTAA
GAACGAGAACGTCGAAGGCTTTTGGGAGGTCTTCAAGCAGTTTGATCTGA
ATTAAGAACGAGAACGTCGAAGGCTTTTGGGAGGTCTTCAAGCAGTTTGA
TCTGAAGCGCGAGGGCTTGATAAGCAGACAGGCCTTTTTCGAGGGTATTA
TCCAGGAAGAAAGGAACGATTTCGGAAACGCAATTTTTACACTTGTCGAC
CCTGAGGACGAGGAAATGCTTGAATTTGGGCGCGAGGGCTTGATAAGCAG
ACAGGCCTTTTTCGAGGGTATTATCCAGGAAGAAAGGAACGATTTCGGAA
ACGCAATTTTTACACTTGTCGACCCTGAGGACGAGGAAATGCTTGAATTT
GGCGAATTTGTTCAGGCAGTGTGCACCTTTTGCTGCTTTTGCGTGACGGA
CATGCTCAAGTTTTGCTTCATGGTTTACGACAAGGACCGATCCGGACTCA
TGGAAATTGAAGAGTTACACCATTTTATCAAGCGAATTTGTTCAGGCAGT
GTGCACCTTTTGCTGCTTTTGCGTGACGGACATGCTCAAGTTTTGCTTCA
TGGTTTACGACAAGGACCGATCCGGACTCATGGAAATTGAAGAGTTACAC
CATTTTATCAAGGTGCTTCACAGCGCCAACGTATCGAACAACATCCAGGG
TGCCATATCACACTTGCAGCTAGACGAGCACGGAAGGCTTCCATTCGATA
GTTTCAAGGTGCTTCACAGCGCCAACGTATCGAACAACATCCAGGGTGCC
ATATCACACTTGCAGCTAGACGAGCACGGAAGGCTTCCATTCGATAGTTT
CAAGATCATGAACAAGAACTTTCCTCAAGTTCTTTATCCCGTCTTTCGGT
TGCAGCAATCAACACAGCGGGCTGTCCTAGGCATCAAGTGGTGGAAGAAG
AAGATCATGAACAAGAACTTTCCTCAAGTTCTTTATCCCGTCTTTCGGTT
GCAGCAATCAACACAGCGGGCTGTCCTAGGCATCAAGTGGTGGAAGAAGA
AGGTGAATGAGCTAGACTTTTGGAGAGAAAATAGGGAGCACGTGGAGCAA
ACGGAAAAGTTGAAGGAAGCGAAGAAAAAGGAACGACAGCGAAATGCGCA
GATAAGAAAAGGTACGGTGAATGAGCTAGACTTTTGGAGAGAAAATAGGG
AGCACGTGGAGCAAACGGAAAAGTTGAAGGAAGCGAAGAAAAAGGAACGA
CAGCGAAATGCGCAGATAAGAAAAGGTACG
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