mRNA_C-linearis_contig79.15382.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig79.15382.1
Unique NamemRNA_C-linearis_contig79.15382.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig79.15382.1 vs. uniprot
Match: D8LMG4_ECTSI (Ubiquitin-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMG4_ECTSI)

HSP 1 Score: 193 bits (491), Expect = 7.370e-61
Identity = 103/145 (71.03%), Postives = 116/145 (80.00%), Query Frame = 1
Query:    1 KGERNDEEDDAVTFVGSASLACNAESKSIGQGLYLNTNLARKGVSQPPDEELA--GLQRQTAPVTIIFDLPDGSQADQEFQMGQTVEVLKSFIESEFGIRMSGQELYLGSELMMDPMSLLDYPEVDSGGDVLIVVEGEMSEETKK 429
            +G + DEEDD V FVGS     NAE KS GQGLYL+TNL R  VS+   +  A  G QRQ A VT++FDLPDGSQADQEFQ+GQTVEVLKSF+ESEFGI MS QELYLGS LMMDPM+LLDYPEVD  G+VLIVVEGEM+E+TKK
Sbjct:   15 RGRKTDEEDDVVAFVGSPRFTRNAEMKSSGQGLYLDTNLVRGSVSREVQDVHADNGFQRQVAVVTVVFDLPDGSQADQEFQLGQTVEVLKSFVESEFGIPMSCQELYLGSVLMMDPMTLLDYPEVDGAGNVLIVVEGEMNEDTKK 159          
BLAST of mRNA_C-linearis_contig79.15382.1 vs. uniprot
Match: A0A7S2RY85_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RY85_9STRA)

HSP 1 Score: 111 bits (278), Expect = 7.740e-29
Identity = 61/119 (51.26%), Postives = 81/119 (68.07%), Query Frame = 1
Query:   79 KSIGQGLYLNTNLARKGVSQPPDEELAGLQRQTAPVTIIFDLPDGSQADQEFQMGQTVEVLKSFIESEFGIRMSGQELYLGS--ELMMDPMSLLDYPEVDSGGDVLIVVEGEMSEETKK 429
            K  G GL L+   A KG  +  +E+L  LQR T PV ++FDLPDGSQ + +FQMGQT+EVLKSF+ SE GI M GQ+L+L    + +MDP++LLDY ++D   +VL+ VEG M    KK
Sbjct:   18 KLTGLGLDLSLASASKGSPRLQEEDLV-LQRATEPVIVVFDLPDGSQVEHKFQMGQTIEVLKSFVASECGIPMGGQDLFLEGLQQPLMDPLTLLDYSQIDPASEVLVRVEGTMHMSAKK 135          
BLAST of mRNA_C-linearis_contig79.15382.1 vs. uniprot
Match: A0A6V1REP9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1REP9_HETAK)

HSP 1 Score: 108 bits (271), Expect = 6.380e-27
Identity = 60/143 (41.96%), Postives = 88/143 (61.54%), Query Frame = 1
Query:    1 KGERNDEEDDAVTFVGSASLACNAESKSIGQGLYLNTNLARKGVSQPPDEELAGLQRQTAPVTIIFDLPDGSQADQEFQMGQTVEVLKSFIESEFGIRMSGQELYLGSELMMDPMSLLDYPEVDSGGDVLIVVEGEMSEETKK 429
            K  ++ E DD    +   ++     +  +G GL L    ++       +E  A  ++QT  VT++F+LPDGS AD+EF +GQTVE LKS++E EF I M  QEL L  +++MDPMSLLDY E++   +V I V+GE+ EE+KK
Sbjct:   68 KASKDVESDDEAEVIQVNNIKEMPHTSRVGMGLDLTAADSKSNDDDFVEENKAERRQQTT-VTVVFELPDGSTADKEFMLGQTVEFLKSYVEGEFDIPMGQQELLLNGKVLMDPMSLLDYSEINPNEEVFISVQGELGEESKK 209          
BLAST of mRNA_C-linearis_contig79.15382.1 vs. uniprot
Match: F0YBA1_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YBA1_AURAN)

HSP 1 Score: 99.8 bits (247), Expect = 7.130e-24
Identity = 57/137 (41.61%), Postives = 83/137 (60.58%), Query Frame = 1
Query:   22 EDDAVTFVGSASLACNAESKSIG-QGLYLNTNLARKGVSQPPDEELAGLQRQTAPVTIIFDLPDGSQADQEFQMGQTVEVLKSFIESEFGIRMSGQELYLGSELMMDPMSLLDYPEVDSGGDVLIVVEGEMSEETKK 429
            +DD VT VGSA  +      ++G +GL ++  +  +   +P  E     +   A V ++F+LPDGS+ ++ F+MG TVEVLKSF+E EF I M  Q LYL   LM+DP+SL DYP +D   D  + V GE+ E+ +K
Sbjct:   22 DDDYVTAVGSALPSAAEPKAALGLRGLDISAVVKSERNPRPCAEHERVERALDAQVLVVFELPDGSEGEKHFKMGHTVEVLKSFVEEEFEIPMGVQSLYLDETLMLDPLSLSDYPAIDPARDCFVRVGGEIPEQAQK 158          
BLAST of mRNA_C-linearis_contig79.15382.1 vs. uniprot
Match: A0A7S2D6F3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D6F3_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 1.680e-23
Identity = 51/100 (51.00%), Postives = 70/100 (70.00%), Query Frame = 1
Query:  124 KGVSQPPDEELAGLQRQTAPVTIIFDLPDGSQADQEFQMGQTVEVLKSFIESEFGIRMSGQELYL----GSELMMDPMSLLDYPEVDSGGDVLIVVEGEM 411
            K      +E+L  ++  T PV ++FDLPDGS  + EF +GQ+VEVLKS+I SE GI+M  Q+L+L    GS L+MDPMSL DYP++ +G + +I VEGEM
Sbjct:   14 KATDGATEEDLIEMEA-TTPVLVVFDLPDGSSVESEFAIGQSVEVLKSYIASECGIQMGDQQLFLEAADGSVLLMDPMSLSDYPQISAGSENIIRVEGEM 112          
BLAST of mRNA_C-linearis_contig79.15382.1 vs. uniprot
Match: A0A8J2SIH4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SIH4_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 1.140e-22
Identity = 56/140 (40.00%), Postives = 82/140 (58.57%), Query Frame = 1
Query:   10 RNDEEDDAVTFVGSASLACNAESKSIGQGLYLNTNLARKGVSQPPDEELAGLQRQTAPVTIIFDLPDGSQADQEFQMGQTVEVLKSFIESEFGIRMSGQELYLGSELMMDPMSLLDYPEVDSGGDVLIVVEGEMSEETKK 429
            R D  DD +  +    ++  AE K    G+ +  +LA+   +    EE   ++R  APV ++F+LPDGS+ ++ F++GQTVEVLK+F+E EF I MS   LYLG E M DP SL D+P V      ++ V GE+ E  +K
Sbjct:    7 RVDSRDDLLATISPKLISPGAEPKPRSIGIDM-ASLAKSERNAENTEEDDIIKRLDAPVLVVFELPDGSEGEKTFKLGQTVEVLKAFVEDEFEIDMSASRLYLGDEEMPDPFSLSDFPSVSPRKACVVRVAGEVPERAQK 145          
BLAST of mRNA_C-linearis_contig79.15382.1 vs. uniprot
Match: A0A7S2HLV2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HLV2_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 8.260e-22
Identity = 53/108 (49.07%), Postives = 72/108 (66.67%), Query Frame = 1
Query:   94 GLYLNTNLARKGVSQPPDE--ELAGLQRQTAPVTIIFDLPDGSQADQEFQMGQTVEVLKSFIESEFGIRMSGQELYL--GSELMMDPMSLLDYPEVDSGGDVLIVVEG 405
            GL L+   A++   Q  D+  E    +R     TI+F+LPDGS    EFQMGQTV+VLKS+I SE GI M+ Q LYL   +++++DPM+LLDYPE+D   ++LI VEG
Sbjct:   54 GLGLDLTQAKQPNDQGSDQTREAQIERRNNTVATILFELPDGSMVQNEFQMGQTVQVLKSYIASEVGIPMAQQSLYLETSTDMLLDPMTLLDYPEIDPMDEILIRVEG 161          
BLAST of mRNA_C-linearis_contig79.15382.1 vs. uniprot
Match: A0A482RPU6_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RPU6_9ARCH)

HSP 1 Score: 82.4 bits (202), Expect = 2.680e-17
Identity = 49/126 (38.89%), Postives = 77/126 (61.11%), Query Frame = 1
Query:    7 ERNDEEDDAVTFVGSASLACNAESKSIGQGLYLNTNLARKGVSQPPDEELAGLQRQTAPVTIIFDLPDGSQADQEFQMGQTVEVLKSFIESEFGIRMSGQELYLGS--ELMMDPMSLLDYPEVDSG 378
            E+NDE +      G   +     +  + +G+ LN  LA +  ++  D     +Q +   + ++FDLPDGSQ +  F++GQ+VEVLKSF+ESE+GI M+ Q ++L S  + M++P+SLLDY EV  G
Sbjct:   22 EKNDELNVIAVCGGHDDITQPQVTSPLLRGMSLNLTLAAEAKARLNDP--VAVQEEF--INVVFDLPDGSQGEGNFKLGQSVEVLKSFVESEYGIPMATQRMFLNSSEKQMLNPLSLLDYAEVKGG 143          
BLAST of mRNA_C-linearis_contig79.15382.1 vs. uniprot
Match: A0A485K463_9STRA (Aste57867_941 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K463_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 2.940e-14
Identity = 39/85 (45.88%), Postives = 58/85 (68.24%), Query Frame = 1
Query:  148 EELAGLQRQTAPVTIIFDLPDGSQADQEFQMGQTVEVLKSFIESEFGIRMSGQELYLGSELMMDPMSLLDYPEVDSGGDVLIVVE 402
            EE   LQ +   ++I F+LPD S+A Q+F+ GQTV VLKS++ +EF + M+  +L LG  +++DP SL DYPE++    V IVV+
Sbjct:   20 EEARRLQEEE--ISITFELPDESEAQQQFKKGQTVAVLKSYLSTEFDLPMTSIKLMLGDVVLVDPYSLTDYPEMERFDAVRIVVK 102          
BLAST of mRNA_C-linearis_contig79.15382.1 vs. uniprot
Match: A0A024TXM3_9STRA (Ubiquitin-like domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TXM3_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.030e-11
Identity = 33/76 (43.42%), Postives = 48/76 (63.16%), Query Frame = 1
Query:  172 QTAPVTIIFDLPDGSQADQEFQMGQTVEVLKSFIESEFGIRMSGQELYLGSELMMDPMSLLDYPEVDSGGDVLIVV 399
            Q   + I F+LPD S+A Q+F+ GQTV VLKSF+E+EF + M    L     +++DP SL DYP+ +   +  +VV
Sbjct:   26 QEEDIEITFELPDQSEARQKFKKGQTVMVLKSFLETEFDLHMPSIRLVHNDVVLLDPYSLTDYPDFEHNDEARVVV 101          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig79.15382.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D8LMG4_ECTSI7.370e-6171.03Ubiquitin-like domain-containing protein n=1 Tax=E... [more]
A0A7S2RY85_9STRA7.740e-2951.26Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6V1REP9_HETAK6.380e-2741.96Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
F0YBA1_AURAN7.130e-2441.61Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S2D6F3_9STRA1.680e-2351.00Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A8J2SIH4_9STRA1.140e-2240.00Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2HLV2_9STRA8.260e-2249.07Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A482RPU6_9ARCH2.680e-1738.89Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A485K463_9STRA2.940e-1445.88Aste57867_941 protein n=1 Tax=Aphanomyces stellatu... [more]
A0A024TXM3_9STRA1.030e-1143.42Ubiquitin-like domain-containing protein n=1 Tax=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig79contigC-linearis_contig79:64730..65950 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score196.4
Seed ortholog evalue8.9e-48
Seed eggNOG ortholog2880.D8LMG4
Hectar predicted targeting categoryother localisation
EggNOG OGs2D08N@1,2SD77@2759
Ec32 ortholog descriptionUbiquitin-related domain
Ec32 orthologEc-05_002660.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size432
Cds size432
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig79.15382.1prot_C-linearis_contig79.15382.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig79 64730..65950 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930488.858234-CDS-C-linearis_contig79:64729..648551622930488.858234-CDS-C-linearis_contig79:64729..64855Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 64730..64855 -
1690881095.6357398-CDS-C-linearis_contig79:64729..648551690881095.6357398-CDS-C-linearis_contig79:64729..64855Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 64730..64855 -
1622930488.8742445-CDS-C-linearis_contig79:65096..651711622930488.8742445-CDS-C-linearis_contig79:65096..65171Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 65097..65171 -
1690881095.649336-CDS-C-linearis_contig79:65096..651711690881095.649336-CDS-C-linearis_contig79:65096..65171Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 65097..65171 -
1622930488.8905044-CDS-C-linearis_contig79:65389..654311622930488.8905044-CDS-C-linearis_contig79:65389..65431Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 65390..65431 -
1690881095.660841-CDS-C-linearis_contig79:65389..654311690881095.660841-CDS-C-linearis_contig79:65389..65431Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 65390..65431 -
1622930488.9101365-CDS-C-linearis_contig79:65761..659501622930488.9101365-CDS-C-linearis_contig79:65761..65950Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 65762..65950 -
1690881095.6731317-CDS-C-linearis_contig79:65761..659501690881095.6731317-CDS-C-linearis_contig79:65761..65950Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 65762..65950 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig79.15382.1

>prot_C-linearis_contig79.15382.1 ID=prot_C-linearis_contig79.15382.1|Name=mRNA_C-linearis_contig79.15382.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=144bp
KGERNDEEDDAVTFVGSASLACNAESKSIGQGLYLNTNLARKGVSQPPDE
ELAGLQRQTAPVTIIFDLPDGSQADQEFQMGQTVEVLKSFIESEFGIRMS
GQELYLGSELMMDPMSLLDYPEVDSGGDVLIVVEGEMSEETKK*
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mRNA from alignment at C-linearis_contig79:64730..65950-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig79.15382.1 ID=mRNA_C-linearis_contig79.15382.1|Name=mRNA_C-linearis_contig79.15382.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1221bp|location=Sequence derived from alignment at C-linearis_contig79:64730..65950- (Chordaria linearis ClinC8C monoicous)
AAGGGAGAGAGAAACGACGAAGAAGACGATGCCGTCACCTTCGTGGGTTC AGCTTCTCTTGCGTGCAACGCGGAATCGAAGTCGATCGGGCAAGGGCTAT ACTTGAACACCAACCTCGCTAGAAAAGGTGTCTCGCAACCTCCGGACGAG GAGCTCGCTGGGCTACAGAGACAGACTGCTCCTGTCACGGTGAACAAACA CGAATTATGGGTTTATCATTCGTTTTGCTTTGAGCGCAGCGACCTTGCCT TGAGCGCGTGTCTATCATTCGTTTTGCTCACGTACCAGTCCTGGCGGTGA CATCCGTAATGTATGTATTTTGAATCCAGTTCGCCAGAAAAGCCCAAGAT AAAGTTGAAGGAACACATTTGAACATCACTGCTGCCGAGTAGAACTATGT GTTCCTTCCTCGCTTATCGCTAACGTTTACGGCGTTTGGAGTTCGCAACG ATGATCTGACTGGTGTATCACCACATCGTACTTGAAACCAATCCCATGCC CTTTTCTTTCACGGTGCAGATTATTTTCGACCTACCGGACGGCAGTCAAG CGGACCAGGAGGTGCGTCTTGCGCTTGGGCAGGATTTGCAACAGAAGGCA TTTCCCCGCACGACGACGACACGCTTAGTCTTATTTGGTTAGACGCGGTC GACTAGCACGCACATGAATCACTGCAATATATTGTTAACCTACACTGAGA GGCATTGGAGGGACCTCGACTTGCGACTTGAGCTGCCTCGCGCATATTAC ACTCTCGACCTCGCTTCCTCTCTCCGTAGTTTCAAATGGGGCAAACTGTG GAAGTGCTCAAGAGCTTCATCGAGTCGGAATTCGGCATACGAATGTCTGG TCAGGTACGTGCCCGACCAACCCGTCTCAGGTGTACCCAGTAGCGTCTGT TCCGTCAAGTCGCATCATAGGCATCACAGCCAAAATGTCCGACGCCGTGT CGGGCATTGAAATCAGCCCTTGTCTAATCGCAAGCACATGCGTTGGTATA CACTCCCACACAACCCAAGAACAAGCATGCTCGACACCCATTGCCGATCA CAATATATTTGACACCGACACGTTGCCACATTCGTTTGGATGCAGGAGCT CTACCTGGGATCGGAGTTAATGATGGACCCAATGTCCCTCCTTGACTACC CGGAGGTTGATTCCGGAGGGGACGTACTGATAGTTGTGGAAGGAGAAATG AGCGAGGAAACAAAGAAGTAG
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Coding sequence (CDS) from alignment at C-linearis_contig79:64730..65950-

>mRNA_C-linearis_contig79.15382.1 ID=mRNA_C-linearis_contig79.15382.1|Name=mRNA_C-linearis_contig79.15382.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=864bp|location=Sequence derived from alignment at C-linearis_contig79:64730..65950- (Chordaria linearis ClinC8C monoicous)
AAGGGAGAGAGAAACGACGAAGAAGACGATGCCGTCACCTTCGTGGGTTC
AGCTTCTCTTGCGTGCAACGCGGAATCGAAGTCGATCGGGCAAGGGCTAT
ACTTGAACACCAACCTCGCTAGAAAAGGTGTCTCGCAACCTCCGGACGAG
GAGCTCGCTGGGCTACAGAGACAGACTGCTCCTGTCACGAAGGGAGAGAG
AAACGACGAAGAAGACGATGCCGTCACCTTCGTGGGTTCAGCTTCTCTTG
CGTGCAACGCGGAATCGAAGTCGATCGGGCAAGGGCTATACTTGAACACC
AACCTCGCTAGAAAAGGTGTCTCGCAACCTCCGGACGAGGAGCTCGCTGG
GCTACAGAGACAGACTGCTCCTGTCACGATTATTTTCGACCTACCGGACG
GCAGTCAAGCGGACCAGGAGATTATTTTCGACCTACCGGACGGCAGTCAA
GCGGACCAGGAGTTTCAAATGGGGCAAACTGTGGAAGTGCTCAAGAGCTT
CATCGAGTCGGAATTCGGCATACGAATGTCTGGTCAGTTTCAAATGGGGC
AAACTGTGGAAGTGCTCAAGAGCTTCATCGAGTCGGAATTCGGCATACGA
ATGTCTGGTCAGGAGCTCTACCTGGGATCGGAGTTAATGATGGACCCAAT
GTCCCTCCTTGACTACCCGGAGGTTGATTCCGGAGGGGACGTACTGATAG
TTGTGGAAGGAGAAATGAGCGAGGAAACAAAGAAGTAGGAGCTCTACCTG
GGATCGGAGTTAATGATGGACCCAATGTCCCTCCTTGACTACCCGGAGGT
TGATTCCGGAGGGGACGTACTGATAGTTGTGGAAGGAGAAATGAGCGAGG
AAACAAAGAAGTAG
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