mRNA_C-linearis_contig79.15382.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig79.15382.1 vs. uniprot
Match: D8LMG4_ECTSI (Ubiquitin-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMG4_ECTSI) HSP 1 Score: 193 bits (491), Expect = 7.370e-61 Identity = 103/145 (71.03%), Postives = 116/145 (80.00%), Query Frame = 1
Query: 1 KGERNDEEDDAVTFVGSASLACNAESKSIGQGLYLNTNLARKGVSQPPDEELA--GLQRQTAPVTIIFDLPDGSQADQEFQMGQTVEVLKSFIESEFGIRMSGQELYLGSELMMDPMSLLDYPEVDSGGDVLIVVEGEMSEETKK 429
+G + DEEDD V FVGS NAE KS GQGLYL+TNL R VS+ + A G QRQ A VT++FDLPDGSQADQEFQ+GQTVEVLKSF+ESEFGI MS QELYLGS LMMDPM+LLDYPEVD G+VLIVVEGEM+E+TKK
Sbjct: 15 RGRKTDEEDDVVAFVGSPRFTRNAEMKSSGQGLYLDTNLVRGSVSREVQDVHADNGFQRQVAVVTVVFDLPDGSQADQEFQLGQTVEVLKSFVESEFGIPMSCQELYLGSVLMMDPMTLLDYPEVDGAGNVLIVVEGEMNEDTKK 159
BLAST of mRNA_C-linearis_contig79.15382.1 vs. uniprot
Match: A0A7S2RY85_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RY85_9STRA) HSP 1 Score: 111 bits (278), Expect = 7.740e-29 Identity = 61/119 (51.26%), Postives = 81/119 (68.07%), Query Frame = 1
Query: 79 KSIGQGLYLNTNLARKGVSQPPDEELAGLQRQTAPVTIIFDLPDGSQADQEFQMGQTVEVLKSFIESEFGIRMSGQELYLGS--ELMMDPMSLLDYPEVDSGGDVLIVVEGEMSEETKK 429
K G GL L+ A KG + +E+L LQR T PV ++FDLPDGSQ + +FQMGQT+EVLKSF+ SE GI M GQ+L+L + +MDP++LLDY ++D +VL+ VEG M KK
Sbjct: 18 KLTGLGLDLSLASASKGSPRLQEEDLV-LQRATEPVIVVFDLPDGSQVEHKFQMGQTIEVLKSFVASECGIPMGGQDLFLEGLQQPLMDPLTLLDYSQIDPASEVLVRVEGTMHMSAKK 135
BLAST of mRNA_C-linearis_contig79.15382.1 vs. uniprot
Match: A0A6V1REP9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1REP9_HETAK) HSP 1 Score: 108 bits (271), Expect = 6.380e-27 Identity = 60/143 (41.96%), Postives = 88/143 (61.54%), Query Frame = 1
Query: 1 KGERNDEEDDAVTFVGSASLACNAESKSIGQGLYLNTNLARKGVSQPPDEELAGLQRQTAPVTIIFDLPDGSQADQEFQMGQTVEVLKSFIESEFGIRMSGQELYLGSELMMDPMSLLDYPEVDSGGDVLIVVEGEMSEETKK 429
K ++ E DD + ++ + +G GL L ++ +E A ++QT VT++F+LPDGS AD+EF +GQTVE LKS++E EF I M QEL L +++MDPMSLLDY E++ +V I V+GE+ EE+KK
Sbjct: 68 KASKDVESDDEAEVIQVNNIKEMPHTSRVGMGLDLTAADSKSNDDDFVEENKAERRQQTT-VTVVFELPDGSTADKEFMLGQTVEFLKSYVEGEFDIPMGQQELLLNGKVLMDPMSLLDYSEINPNEEVFISVQGELGEESKK 209
BLAST of mRNA_C-linearis_contig79.15382.1 vs. uniprot
Match: F0YBA1_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YBA1_AURAN) HSP 1 Score: 99.8 bits (247), Expect = 7.130e-24 Identity = 57/137 (41.61%), Postives = 83/137 (60.58%), Query Frame = 1
Query: 22 EDDAVTFVGSASLACNAESKSIG-QGLYLNTNLARKGVSQPPDEELAGLQRQTAPVTIIFDLPDGSQADQEFQMGQTVEVLKSFIESEFGIRMSGQELYLGSELMMDPMSLLDYPEVDSGGDVLIVVEGEMSEETKK 429
+DD VT VGSA + ++G +GL ++ + + +P E + A V ++F+LPDGS+ ++ F+MG TVEVLKSF+E EF I M Q LYL LM+DP+SL DYP +D D + V GE+ E+ +K
Sbjct: 22 DDDYVTAVGSALPSAAEPKAALGLRGLDISAVVKSERNPRPCAEHERVERALDAQVLVVFELPDGSEGEKHFKMGHTVEVLKSFVEEEFEIPMGVQSLYLDETLMLDPLSLSDYPAIDPARDCFVRVGGEIPEQAQK 158
BLAST of mRNA_C-linearis_contig79.15382.1 vs. uniprot
Match: A0A7S2D6F3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D6F3_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 1.680e-23 Identity = 51/100 (51.00%), Postives = 70/100 (70.00%), Query Frame = 1
Query: 124 KGVSQPPDEELAGLQRQTAPVTIIFDLPDGSQADQEFQMGQTVEVLKSFIESEFGIRMSGQELYL----GSELMMDPMSLLDYPEVDSGGDVLIVVEGEM 411
K +E+L ++ T PV ++FDLPDGS + EF +GQ+VEVLKS+I SE GI+M Q+L+L GS L+MDPMSL DYP++ +G + +I VEGEM
Sbjct: 14 KATDGATEEDLIEMEA-TTPVLVVFDLPDGSSVESEFAIGQSVEVLKSYIASECGIQMGDQQLFLEAADGSVLLMDPMSLSDYPQISAGSENIIRVEGEM 112
BLAST of mRNA_C-linearis_contig79.15382.1 vs. uniprot
Match: A0A8J2SIH4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SIH4_9STRA) HSP 1 Score: 96.3 bits (238), Expect = 1.140e-22 Identity = 56/140 (40.00%), Postives = 82/140 (58.57%), Query Frame = 1
Query: 10 RNDEEDDAVTFVGSASLACNAESKSIGQGLYLNTNLARKGVSQPPDEELAGLQRQTAPVTIIFDLPDGSQADQEFQMGQTVEVLKSFIESEFGIRMSGQELYLGSELMMDPMSLLDYPEVDSGGDVLIVVEGEMSEETKK 429
R D DD + + ++ AE K G+ + +LA+ + EE ++R APV ++F+LPDGS+ ++ F++GQTVEVLK+F+E EF I MS LYLG E M DP SL D+P V ++ V GE+ E +K
Sbjct: 7 RVDSRDDLLATISPKLISPGAEPKPRSIGIDM-ASLAKSERNAENTEEDDIIKRLDAPVLVVFELPDGSEGEKTFKLGQTVEVLKAFVEDEFEIDMSASRLYLGDEEMPDPFSLSDFPSVSPRKACVVRVAGEVPERAQK 145
BLAST of mRNA_C-linearis_contig79.15382.1 vs. uniprot
Match: A0A7S2HLV2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HLV2_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 8.260e-22 Identity = 53/108 (49.07%), Postives = 72/108 (66.67%), Query Frame = 1
Query: 94 GLYLNTNLARKGVSQPPDE--ELAGLQRQTAPVTIIFDLPDGSQADQEFQMGQTVEVLKSFIESEFGIRMSGQELYL--GSELMMDPMSLLDYPEVDSGGDVLIVVEG 405
GL L+ A++ Q D+ E +R TI+F+LPDGS EFQMGQTV+VLKS+I SE GI M+ Q LYL +++++DPM+LLDYPE+D ++LI VEG
Sbjct: 54 GLGLDLTQAKQPNDQGSDQTREAQIERRNNTVATILFELPDGSMVQNEFQMGQTVQVLKSYIASEVGIPMAQQSLYLETSTDMLLDPMTLLDYPEIDPMDEILIRVEG 161
BLAST of mRNA_C-linearis_contig79.15382.1 vs. uniprot
Match: A0A482RPU6_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RPU6_9ARCH) HSP 1 Score: 82.4 bits (202), Expect = 2.680e-17 Identity = 49/126 (38.89%), Postives = 77/126 (61.11%), Query Frame = 1
Query: 7 ERNDEEDDAVTFVGSASLACNAESKSIGQGLYLNTNLARKGVSQPPDEELAGLQRQTAPVTIIFDLPDGSQADQEFQMGQTVEVLKSFIESEFGIRMSGQELYLGS--ELMMDPMSLLDYPEVDSG 378
E+NDE + G + + + +G+ LN LA + ++ D +Q + + ++FDLPDGSQ + F++GQ+VEVLKSF+ESE+GI M+ Q ++L S + M++P+SLLDY EV G
Sbjct: 22 EKNDELNVIAVCGGHDDITQPQVTSPLLRGMSLNLTLAAEAKARLNDP--VAVQEEF--INVVFDLPDGSQGEGNFKLGQSVEVLKSFVESEYGIPMATQRMFLNSSEKQMLNPLSLLDYAEVKGG 143
BLAST of mRNA_C-linearis_contig79.15382.1 vs. uniprot
Match: A0A485K463_9STRA (Aste57867_941 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K463_9STRA) HSP 1 Score: 73.6 bits (179), Expect = 2.940e-14 Identity = 39/85 (45.88%), Postives = 58/85 (68.24%), Query Frame = 1
Query: 148 EELAGLQRQTAPVTIIFDLPDGSQADQEFQMGQTVEVLKSFIESEFGIRMSGQELYLGSELMMDPMSLLDYPEVDSGGDVLIVVE 402
EE LQ + ++I F+LPD S+A Q+F+ GQTV VLKS++ +EF + M+ +L LG +++DP SL DYPE++ V IVV+
Sbjct: 20 EEARRLQEEE--ISITFELPDESEAQQQFKKGQTVAVLKSYLSTEFDLPMTSIKLMLGDVVLVDPYSLTDYPEMERFDAVRIVVK 102
BLAST of mRNA_C-linearis_contig79.15382.1 vs. uniprot
Match: A0A024TXM3_9STRA (Ubiquitin-like domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TXM3_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 1.030e-11 Identity = 33/76 (43.42%), Postives = 48/76 (63.16%), Query Frame = 1
Query: 172 QTAPVTIIFDLPDGSQADQEFQMGQTVEVLKSFIESEFGIRMSGQELYLGSELMMDPMSLLDYPEVDSGGDVLIVV 399
Q + I F+LPD S+A Q+F+ GQTV VLKSF+E+EF + M L +++DP SL DYP+ + + +VV
Sbjct: 26 QEEDIEITFELPDQSEARQKFKKGQTVMVLKSFLETEFDLHMPSIRLVHNDVVLLDPYSLTDYPDFEHNDEARVVV 101 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig79.15382.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig79.15382.1 >prot_C-linearis_contig79.15382.1 ID=prot_C-linearis_contig79.15382.1|Name=mRNA_C-linearis_contig79.15382.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=144bp KGERNDEEDDAVTFVGSASLACNAESKSIGQGLYLNTNLARKGVSQPPDEback to top mRNA from alignment at C-linearis_contig79:64730..65950- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig79.15382.1 ID=mRNA_C-linearis_contig79.15382.1|Name=mRNA_C-linearis_contig79.15382.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1221bp|location=Sequence derived from alignment at C-linearis_contig79:64730..65950- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig79:64730..65950- >mRNA_C-linearis_contig79.15382.1 ID=mRNA_C-linearis_contig79.15382.1|Name=mRNA_C-linearis_contig79.15382.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=864bp|location=Sequence derived from alignment at C-linearis_contig79:64730..65950- (Chordaria linearis ClinC8C monoicous)back to top |