mRNA_C-linearis_contig79.15379.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig79.15379.1 vs. uniprot
Match: D8LRF1_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF1_ECTSI) HSP 1 Score: 333 bits (855), Expect = 2.070e-96 Identity = 165/219 (75.34%), Postives = 187/219 (85.39%), Query Frame = 1
Query: 2596 GR*VERTRAGVKEYVSSVSFASPVPAPRLPCRHCTQTFDAAQGRGGHEKSMHSTANMLQGVRLQRMLGKDAMDKDALPWERAGPGRCYYVKVDGITGAASFVLQPKRLPDIDLESDGFTAERPATSRRGADKRSRYDYRFKAHVLQQLRILEEYRPALWEAEHLTPLQYLETHMKIPHSNISKWAKDEDEIVVAAADDVKKTLQAKQQPKRWFPAAEKE 3252
G+ V RTRAGV+EYVSSVSFASP PAPR+ C HC TF AQG G H K+ HSTAN+ QG RLQRMLG DA D LPWERAGPGRCY+VK+DGITGAASFVLQPKR+P+IDLESDGFT P ++RRGA KR+RYD+RFKAHV+QQLRILEE R ALW+AEHL+P+QYLETHMK+P +NISKW KDEDEIV AAD+VK+TL AKQQPKRWFPAAE+E
Sbjct: 140 GQPVLRTRAGVQEYVSSVSFASPAPAPRVQCPHCPTTFVNAQGLGLHMKTNHSTANVFQGQRLQRMLGDDAKG-DVLPWERAGPGRCYHVKIDGITGAASFVLQPKRVPNIDLESDGFTPAEPRSARRGAAKRNRYDFRFKAHVIQQLRILEEDRQALWQAEHLSPMQYLETHMKVPRTNISKWVKDEDEIVAFAADEVKQTLLAKQQPKRWFPAAERE 357
BLAST of mRNA_C-linearis_contig79.15379.1 vs. uniprot
Match: B5LWM7_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWM7_9PHYC) HSP 1 Score: 322 bits (825), Expect = 2.950e-96 Identity = 154/294 (52.38%), Postives = 206/294 (70.07%), Query Frame = -1
Query: 1336 FGKMRTWFSRRTGPGVELFIEDCLRMQGSRLAVYKEAEKYGARLITNNIKGAISNQDGGLLIKLGFETDMVTGNFISTVRDWCGFNELTLREPVFYDNVAQGNKVTPGQYVATETTSPPGAQARSRSRSSEATFRTYVTEVLDDKDEQCICQSVEREDICNQKDSCHLLSHSECKNTPVDTDPSNRLAASTRLHRGIDGTSDNFPPWLRISVKNVDTEPVRCIGKNGTEHLRFRVDLYIDFFSDEHRKQHGIICWEEGVKDDGEGPVETFVHVKNHDLFKNGVDWKYMETTEIW 2217
+G+++ W +R + PG+E I+DC +QG RLA+Y+EAEK+GAR +T IS+ D GLL+KL FE + G F+++VR WC FN++ L + V+ ++ G V G YV ET SPP ++AR RSR S + ++VTE+LD K E C+ QSVE + +QKD CHLL+H ECK TP+D+DPSNRLA ST+LHR +DGTS PPW R+ VK VD PV C G +H R+RVDLYIDF S+EHR+ HG W++G +DDGE PVETFV+VK++D+F N V+WKY TT IW
Sbjct: 89 YGRVKKWAARSSAPGIEFVIQDCSSVQGCRLALYEEAEKHGARRVTPE-SNPISSHDNGLLVKLAFENQGMRGFFLNSVRRWCSFNKVDLGDIVYNEHTNLGRFVFMGDYVEEETDSPPDSRARKRSRESAESLTSFVTEILDPKSELCVYQSVEAQGY-SQKDGCHLLAHCECKGTPMDSDPSNRLACSTQLHRALDGTSKRHPPWARVKVKGVDINPVLCEGVGVKQHNRYRVDLYIDFMSEEHRRNHGFY-WKDGSRDDGESPVETFVYVKDYDVFTNCVEWKYKHTTAIW 379
BLAST of mRNA_C-linearis_contig79.15379.1 vs. uniprot
Match: A0A6H5JXN2_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN2_9PHAE) HSP 1 Score: 274 bits (701), Expect = 1.460e-75 Identity = 143/223 (64.13%), Postives = 159/223 (71.30%), Query Frame = 1
Query: 2584 LFPIGR*VERTRAGVKEYVSSVSFASPVPAPRLPCRHCTQTFDAAQGRGGHEKSMHSTANMLQGVRLQRMLGKDAMDKDALPWERAGPGRCYYVKVDGITGAASFVLQPKRLPDIDLESDGFTAERPATSRRGADKRSRYDYRFKAHVLQQLRILEEYRPALWEAEHLTPLQYLETHMKIPHSNISKWAKDEDEIVVAAADDVKKTLQAKQQPKRWFPAAEKE 3252
F + V RTRAGV+EYVS VS ASP PAPR+ C HC F +G G H K+ HSTANM QG RLQRMLG DA D L WERAGPGRCY+VK DGITGAASFVLQPKRLPDIDLES+GFT P ++RRGA KR+RY Y +LW AEHLTPLQYLETHM +P NI KW K+E+EIV AAD+VK+TL AKQQPKRWFP AEKE
Sbjct: 3 FFNLADCVSRTRAGVQEYVSGVSVASPAPAPRVRCPHCPTNFVNTKGLGVHMKTNHSTANMFQGQRLQRMLGDDAKG-DVLLWERAGPGRCYHVKFDGITGAASFVLQPKRLPDIDLESEGFTRAEPKSARRGAAKRNRYGY-----------------TSLWLAEHLTPLQYLETHMNVPLPNICKWVKEENEIVAGAADEVKQTLLAKQQPKRWFPIAEKE 207
BLAST of mRNA_C-linearis_contig79.15379.1 vs. uniprot
Match: A0A6H5K3E7_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3E7_9PHAE) HSP 1 Score: 249 bits (636), Expect = 3.770e-70 Identity = 130/216 (60.19%), Postives = 154/216 (71.30%), Query Frame = 1
Query: 2605 VERTRAGVKEYVSSVSFASPVPAPRLPCRHCTQTFDAAQGRGGHEKSMHSTANMLQGVRLQRMLGKDAMDKDALPWERAGPGRCYYVKVDGITGAASFVLQPKRLPDIDLESDGFTAERPATSRRGADKRSRYDYRFKAHVLQQLRILEEYRPALWEAEHLTPLQYLETHMKIPHSNISKWAKDEDEIVVAAADDVKKTLQAKQQPKRWFPAAEKE 3252
+ERTR GV E+VS ++F P P R+PC HC TF QG G H K+ HS ANM G+RLQRMLGK PW AGPGRC++VKVDG TGAASFVLQ KR D+DLESDGFT +R RGA KR RYD+RFKAHV+ QLR+L+E L++ E LTPLQYLE +K+ +S I KWA+DE IV +AADDVK+T AKQQPKRWFP EK+
Sbjct: 14 IERTRGGVTEHVSGINFPPPAPERRIPCPHCPMTFVNEQGLGIHVKTQHSNANMSNGLRLQRMLGKTPKGY-VQPWGEAGPGRCWHVKVDGATGAASFVLQRKRFRDLDLESDGFT-DRKVKETRGAVKRKRYDFRFKAHVVTQLRLLQEDAADLFKEEQLTPLQYLEDRLKVNYSLIVKWAQDEANIVQSAADDVKQTHLAKQQPKRWFPEEEKK 227
BLAST of mRNA_C-linearis_contig79.15379.1 vs. uniprot
Match: A0A6H5JKI6_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKI6_9PHAE) HSP 1 Score: 251 bits (641), Expect = 1.530e-69 Identity = 128/214 (59.81%), Postives = 153/214 (71.50%), Query Frame = 1
Query: 2605 VERTRAGVKEYVSSVSFASPVPAPRLPCRHCTQTFDAAQGRGGHEKSMHSTANMLQGVRLQRMLGKDAMDKDALPWERAGPGRCYYVKVDGITGAASFVLQPKRLPDIDLESDGFTAERPATSRRGADKRSRYDYRFKAHVLQQLRILEEYRPALWEAEHLTPLQYLETHMKIPHSNISKWAKDEDEIVVAAADDVKKTLQAKQQPKRWFPAAE 3246
+ERTR GVKE +S +SF P P R C HC TF QG G H ++ HS+ANM GVRL+RML KD + LPWE AGPGRC++VK D TG ASFVLQ KR D+DL+SDGF +P +R GA KR RYD+R KAH + QLRIL++ LW+ E TPLQ+LE +KIP+SNI KWAK+E E+V AAADDVKK+L AKQQPKRWFP AE
Sbjct: 162 IERTRGGVKELISGISFPPPTPESRRSCPHCPMTFVNEQGLGIHVRTQHSSANMSNGVRLRRMLRKD-VGGSVLPWEAAGPGRCWHVKFDHATGTASFVLQRKRFLDLDLDSDGFMDRKPKDTR-GAPKRRRYDFRVKAHAVNQLRILQDNAEDLWKDEQRTPLQFLEDRLKIPYSNIVKWAKNEKELVAAAADDVKKSLLAKQQPKRWFPEAE 373
BLAST of mRNA_C-linearis_contig79.15379.1 vs. uniprot
Match: A0A6H5KCI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCI3_9PHAE) HSP 1 Score: 249 bits (636), Expect = 8.100e-69 Identity = 127/215 (59.07%), Postives = 151/215 (70.23%), Query Frame = 1
Query: 2605 VERTRAGVKEYVSSVSFASPVPAPRLPCRHCTQTFDAAQGRGGHEKSMHSTANMLQGVRLQRMLGKDAMDKDALPWERAGPGRCYYVKVDGITGAASFVLQPKRLPDIDLESDGFTAERPATSRRGADKRSRYDYRFKAHVLQQLRILEEYRPALWEAEHLTPLQYLETHMKIPHSNISKWAKDEDEIVVAAADDVKKTLQAKQQPKRWFPAAEK 3249
+ER R GVKE +S +SF P P R C HC TF QG G H ++ HS+ANM GVRL+RML KD LPWE AGPGRC++VK D TG ASFVL+ KR D+DL+SDGF +P +R GA KR RYD+RFKAH + QLRILE+ LW+ E TPL + E +KIP+SNI KWAK+E E+V AAADDVKK+L AKQQPKRWFP AEK
Sbjct: 110 IERARGGVKELISGISFPPPTPESRRSCPHCPMTFVNEQGLGIHVRTQHSSANMSNGVRLRRMLRKDEQGS-VLPWEAAGPGRCWHVKFDHATGTASFVLRRKRFLDLDLDSDGFMDRKPKDTR-GAPKRRRYDFRFKAHAVNQLRILEDNAEDLWKEEQRTPLLFFEDRLKIPYSNIVKWAKNEKELVAAAADDVKKSLLAKQQPKRWFPEAEK 322
BLAST of mRNA_C-linearis_contig79.15379.1 vs. uniprot
Match: A0A6H5KBV2_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBV2_9PHAE) HSP 1 Score: 254 bits (648), Expect = 8.380e-68 Identity = 133/218 (61.01%), Postives = 156/218 (71.56%), Query Frame = 1
Query: 2596 GR*VERTRAGVKEYVSSVSFASPVPAPRLPCRHCTQTFDAAQGRGGHEKSMHSTANMLQGVRLQRMLGKDAMDKDALPWERAGPGRCYYVKVDGITGAASFVLQPKRLPDIDLESDGFTAERPATSRRGADKRSRYDYRFKAHVLQQLRILEEYRPALWEAEHLTPLQYLETHMKIPHSNISKWAKDEDEIVVAAADDVKKTLQAKQQPKRWFPAAEK 3249
G+ +ERTR GVKE+VS +SF P P R C HC T QG G H ++ HS+ANM GVRL+RML K+ ++ LPWE AGPGRC++VKVD TGAASFVLQ KR D+DLESDGF +R RGA KR RYDYRFKA+ + QLRILE+ LW+ E TPLQYLE +K+ +SNI KWAKDE IV AAADDVKK+L AKQQ KRWFP AEK
Sbjct: 373 GQPIERTRGGVKEFVSGISFPPPAPESRRSCLHCPMTIVNEQGLGIHVRTQHSSANMSNGVRLRRMLWKN-LEGRVLPWEGAGPGRCWHVKVDDATGAASFVLQRKRFLDLDLESDGFM-DRETKETRGAPKRRRYDYRFKANAVNQLRILEDNAADLWKEEERTPLQYLEDRLKVHYSNIVKWAKDEKAIVAAAADDVKKSLLAKQQSKRWFPEAEK 588
BLAST of mRNA_C-linearis_contig79.15379.1 vs. uniprot
Match: A0A6H5JFX9_9PHAE (C2H2-type domain-containing protein n=15 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JFX9_9PHAE) HSP 1 Score: 255 bits (651), Expect = 1.060e-66 Identity = 133/219 (60.73%), Postives = 157/219 (71.69%), Query Frame = 1
Query: 2596 GR*VERTRAGVKEYVSSVSFASPVPAPRLPCRHCTQTFDAAQGRGGHEKSMHSTANMLQGVRLQRMLGKDAMDKDALPWERAGPGRCYYVKVDGITGAASFVLQPKRLPDIDLESDGFTAERPATSRRGADKRSRYDYRFKAHVLQQLRILEEYRPALWEAEHLTPLQYLETHMKIPHSNISKWAKDEDEIVVAAADDVKKTLQAKQQPKRWFPAAEKE 3252
G+ +ERTR GV E+VS ++F P P R+PC HC TF QG G H K+ HS ANM G+RLQRMLGK PW AGPGRC++VKVDG TGAASFVLQ KR D+DLESDGFT +R RGA KR RYD+RFKAHV+ QLR+L+E L++ E LTPLQYLE +K+ +S I KWA+DE IV +AADDVKKTL AKQQPKRWFP EK+
Sbjct: 148 GKPIERTRGGVTEHVSGINFPPPAPERRIPCPHCPMTFVNEQGLGIHVKTQHSNANMSNGLRLQRMLGKTPKGY-VQPWGEAGPGRCWHVKVDGATGAASFVLQRKRFRDLDLESDGFT-DRKVKETRGAVKRKRYDFRFKAHVVTQLRLLQEDAADLFKEEQLTPLQYLEDRLKVNYSLIVKWAQDEANIVQSAADDVKKTLLAKQQPKRWFPEEEKK 364
BLAST of mRNA_C-linearis_contig79.15379.1 vs. uniprot
Match: A0A6H5K4R4_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4R4_9PHAE) HSP 1 Score: 253 bits (645), Expect = 4.980e-66 Identity = 132/219 (60.27%), Postives = 156/219 (71.23%), Query Frame = 1
Query: 2596 GR*VERTRAGVKEYVSSVSFASPVPAPRLPCRHCTQTFDAAQGRGGHEKSMHSTANMLQGVRLQRMLGKDAMDKDALPWERAGPGRCYYVKVDGITGAASFVLQPKRLPDIDLESDGFTAERPATSRRGADKRSRYDYRFKAHVLQQLRILEEYRPALWEAEHLTPLQYLETHMKIPHSNISKWAKDEDEIVVAAADDVKKTLQAKQQPKRWFPAAEKE 3252
G+ +ERTR GV E+VS ++F P P R+PC HC TF QG G H K+ HS ANM G+RLQRMLGK PW AGPGRC++VKVDG TGAASFVLQ KR D+DLESDGFT +R RGA KR RYD+RFK HV+ QLR+L+E L++ E LTPLQYLE +K+ +S I KWA+DE IV +AADDVKKTL AKQQPKRWFP EK+
Sbjct: 148 GKPIERTRGGVTEHVSGITFPPPAPERRIPCPHCPMTFVNEQGLGIHVKTQHSNANMSNGLRLQRMLGKTPKGY-VQPWGEAGPGRCWHVKVDGATGAASFVLQRKRFRDLDLESDGFT-DRKVKETRGAVKRKRYDFRFKTHVVIQLRLLQEDAADLFKEEQLTPLQYLEDRLKVNYSLIVKWAQDEANIVQSAADDVKKTLLAKQQPKRWFPEEEKK 364
BLAST of mRNA_C-linearis_contig79.15379.1 vs. uniprot
Match: A0A6H5L1Y1_9PHAE (HTH CENPB-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Y1_9PHAE) HSP 1 Score: 253 bits (647), Expect = 7.140e-66 Identity = 132/215 (61.40%), Postives = 154/215 (71.63%), Query Frame = 1
Query: 2605 VERTRAGVKEYVSSVSFASPVPAPRLPCRHCTQTFDAAQGRGGHEKSMHSTANMLQGVRLQRMLGKDAMDKDALPWERAGPGRCYYVKVDGITGAASFVLQPKRLPDIDLESDGFTAERPATSRRGADKRSRYDYRFKAHVLQQLRILEEYRPALWEAEHLTPLQYLETHMKIPHSNISKWAKDEDEIVVAAADDVKKTLQAKQQPKRWFPAAEK 3249
+ERTR GVKE+VS +SF P P C HC TF QG G H ++ HS+ANM GVRL+RML K+ ++ LPWE GPGRC++VKVD TGAASFVLQ KR D+DLESDGF +R RGA KR RYDYRFKA+ + QLRILE+ LW+ E TPLQYLE +K+ +SNI KWAKDE IV AAADDVKK+L AKQQPKRWFP AEK
Sbjct: 270 IERTRDGVKEFVSGISFPPPAPESHRSCPHCPTTFVNDQGLGIHVRTQHSSANMSNGVRLRRMLRKN-LEGRVLPWEEPGPGRCWHVKVDDATGAASFVLQRKRFLDLDLESDGFM-DRETKETRGAPKRRRYDYRFKANAVNQLRILEDNAADLWKEEERTPLQYLEDRLKVHYSNIVKWAKDEKAIVAAAADDVKKSLLAKQQPKRWFPEAEK 482 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig79.15379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig79.15379.1 >prot_C-linearis_contig79.15379.1 ID=prot_C-linearis_contig79.15379.1|Name=mRNA_C-linearis_contig79.15379.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=179bp MHSTANMLQGVRLQRMLGKDAMDKDALPWERAGPGRCYYVKVDGITGAASback to top mRNA from alignment at C-linearis_contig79:26833..36381+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig79.15379.1 ID=mRNA_C-linearis_contig79.15379.1|Name=mRNA_C-linearis_contig79.15379.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=9549bp|location=Sequence derived from alignment at C-linearis_contig79:26833..36381+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig79:26833..36381+ >mRNA_C-linearis_contig79.15379.1 ID=mRNA_C-linearis_contig79.15379.1|Name=mRNA_C-linearis_contig79.15379.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1074bp|location=Sequence derived from alignment at C-linearis_contig79:26833..36381+ (Chordaria linearis ClinC8C monoicous)back to top |