mRNA_C-linearis_contig78.15368.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig78.15368.1
Unique NamemRNA_C-linearis_contig78.15368.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig78.15368.1 vs. uniprot
Match: D7G8U3_ECTSI (Ribosomal_L2_C domain-containing protein n=3 Tax=Eukaryota TaxID=2759 RepID=D7G8U3_ECTSI)

HSP 1 Score: 503 bits (1294), Expect = 2.710e-174
Identity = 244/254 (96.06%), Postives = 251/254 (98.82%), Query Frame = 1
Query:    1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKFRKLDYAERHGYIKGVIKDIIHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGNIMPLGSMPEGTVCSSIEAKVGDRGTFARCSGDYAVLISHDEDKGTSKIRLPSGSKKTVSSDCRAMVGIVAGGGRTDKPMLKAGRAYHKYRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIRQEKE 762
            MGKVIRGQRKGKGGIFTSHTRLRKGPVK RKLDYAERHGYIKGV+KD+IHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGNIMP+ SMPEGTVCSSIEAKVGDRGTFARCSGDYAVLISHDE+KGTSK+RLPSGSKKT+SSDCRAMVGIVAGGGRTDKPMLKAGRAYHK+RVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIR EKE
Sbjct:    1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKDLIHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGNIMPVRSMPEGTVCSSIEAKVGDRGTFARCSGDYAVLISHDEEKGTSKLRLPSGSKKTISSDCRAMVGIVAGGGRTDKPMLKAGRAYHKFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIRTEKE 254          
BLAST of mRNA_C-linearis_contig78.15368.1 vs. uniprot
Match: A0A7S2V227_9STRA (Hypothetical protein n=2 Tax=Sar TaxID=2698737 RepID=A0A7S2V227_9STRA)

HSP 1 Score: 449 bits (1155), Expect = 3.600e-153
Identity = 214/251 (85.26%), Postives = 234/251 (93.23%), Query Frame = 1
Query:    1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKFRKLDYAERHGYIKGVIKDIIHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGNIMPLGSMPEGTVCSSIEAKVGDRGTFARCSGDYAVLISHDEDKGTSKIRLPSGSKKTVSSDCRAMVGIVAGGGRTDKPMLKAGRAYHKYRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIRQ 753
            MGKVIRGQRKGKG +F SHT+ RKG VKFRKLDYAERHGY+KGV+K I+HEPGRGAPLA V F+NPY+FK+D EL+VAVEGMYSG FIYCGKKA LT+GNIMP+G+MPEGTVC +IEA  GDRGTFARCSGDYAV+ISHDEDKGTS+IRLPSGSKKT+ S CRAMVGIVAGGGRTDKPMLKAGRAYHKYRVKRNEWP VRGVAMNPVEHP GGGNHQHIGHPST+NRLASAG+KVGLIAARRTGRLRGI++
Sbjct:    1 MGKVIRGQRKGKGSVFVSHTKNRKGAVKFRKLDYAERHGYVKGVVKQILHEPGRGAPLAVVAFKNPYRFKKDTELMVAVEGMYSGMFIYCGKKAILTIGNIMPVGAMPEGTVCCNIEAAPGDRGTFARCSGDYAVVISHDEDKGTSRIRLPSGSKKTIKSLCRAMVGIVAGGGRTDKPMLKAGRAYHKYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTSNRLASAGKKVGLIAARRTGRLRGIKK 251          
BLAST of mRNA_C-linearis_contig78.15368.1 vs. uniprot
Match: A0A835ZD66_9STRA (Translation protein SH3-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD66_9STRA)

HSP 1 Score: 445 bits (1145), Expect = 1.170e-151
Identity = 208/254 (81.89%), Postives = 236/254 (92.91%), Query Frame = 1
Query:    1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKFRKLDYAERHGYIKGVIKDIIHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGNIMPLGSMPEGTVCSSIEAKVGDRGTFARCSGDYAVLISHDEDKGTSKIRLPSGSKKTVSSDCRAMVGIVAGGGRTDKPMLKAGRAYHKYRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIRQEKE 762
            MGKVIRG RKG+G +FTSHTRLRKGPVK RKLDYAERHGYIKGV+K+IIHEP RGAP+AK+QFQNPY++K+DNELIVA EGMY+G FIYCGKKA LTVGNI+P+GSMPEG+V  ++E++ GDRG+ ARCSGDYAV+++HDEDKGT+KIRLPSGSKKT+ S+CRAMVGI+AGGGRTDKP+LKAGRAYHKYRVKRNEWP VRGVAMNPVEHP GGGNHQHIGHPST  RLASAGQKVGLIAARRTGRLRGI++  E
Sbjct:    1 MGKVIRGCRKGRGTVFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKEIIHEPARGAPIAKIQFQNPYEYKKDNELIVAAEGMYTGMFIYCGKKAQLTVGNILPVGSMPEGSVICNVESRPGDRGSLARCSGDYAVVVTHDEDKGTTKIRLPSGSKKTIFSNCRAMVGIIAGGGRTDKPLLKAGRAYHKYRVKRNEWPRVRGVAMNPVEHPHGGGNHQHIGHPSTTKRLASAGQKVGLIAARRTGRLRGIKKTSE 254          
BLAST of mRNA_C-linearis_contig78.15368.1 vs. uniprot
Match: A0A7R9UAP5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAP5_9STRA)

HSP 1 Score: 417 bits (1072), Expect = 1.290e-140
Identity = 191/251 (76.10%), Postives = 227/251 (90.44%), Query Frame = 1
Query:    1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKFRKLDYAERHGYIKGVIKDIIHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGNIMPLGSMPEGTVCSSIEAKVGDRGTFARCSGDYAVLISHDEDKGTSKIRLPSGSKKTVSSDCRAMVGIVAGGGRTDKPMLKAGRAYHKYRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIRQ 753
            MGKV+RG RKGKG +F SHTRLRKGP K R+LD++ER GY+KG++K+I+HEPGRGAPLA++QFQNPYK+++DNEL+V  EGMYSGQFI+CGKKA L+VGNI+PLG +PEGTV  ++E+ +GDRG   + SG Y V+I+ DEDKGTS+IRLPSG+KKT+S+ CRAMVGIVAGGGRTDKPMLKAGRAYHKYRVKRNEWP VRGVAMNPVEHPFGGGNHQHIGHPST NR+ SAG+KVGLIAARRTGRLRG+++
Sbjct:    1 MGKVVRGCRKGKGSVFKSHTRLRKGPAKLRRLDFSERTGYVKGLVKEILHEPGRGAPLARIQFQNPYKYQKDNELMVCAEGMYSGQFIFCGKKADLSVGNILPLGQLPEGTVVCNVESYIGDRGNLIKTSGGYGVVITQDEDKGTSRIRLPSGAKKTLSNKCRAMVGIVAGGGRTDKPMLKAGRAYHKYRVKRNEWPKVRGVAMNPVEHPFGGGNHQHIGHPSTTNRMCSAGKKVGLIAARRTGRLRGVKK 251          
BLAST of mRNA_C-linearis_contig78.15368.1 vs. uniprot
Match: F0YEL9_AURAN (Ribosomal_L2_C domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YEL9_AURAN)

HSP 1 Score: 414 bits (1064), Expect = 2.010e-139
Identity = 194/251 (77.29%), Postives = 221/251 (88.05%), Query Frame = 1
Query:    1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKFRKLDYAERHGYIKGVIKDIIHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGNIMPLGSMPEGTVCSSIEAKVGDRGTFARCSGDYAVLISHDEDKGTSKIRLPSGSKKTVSSDCRAMVGIVAGGGRTDKPMLKAGRAYHKYRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIRQ 753
            MGKVIRG RKGKG IFT+HTRLRKGPVK RK DYAE+ GY+KGV+K I+HE GRGAP+AKVQFQN Y+F+RDNEL VA EG+Y G FIYCG KA L VGN++P+ ++PEGTV  + EA+ GDRG FARCSGDYAV+++HDED GT+K+RLPSG KKTV S CRAM+GIVAGGGRTDKPMLKAGRAYHKYRVKRNEWP VRGVAMNPVEHP GGGNHQHIGHPST  R+ SAG+KVGLIAARRTGRLRG+++
Sbjct:    1 MGKVIRGCRKGKGTIFTAHTRLRKGPVKLRKADYAEKTGYVKGVVKAIVHESGRGAPIAKVQFQNSYRFQRDNELFVAAEGLYEGAFIYCGAKAQLAVGNVLPISAIPEGTVICNAEARPGDRGAFARCSGDYAVVVTHDEDHGTTKLRLPSGGKKTVKSVCRAMIGIVAGGGRTDKPMLKAGRAYHKYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTTKRICSAGKKVGLIAARRTGRLRGLKK 251          
BLAST of mRNA_C-linearis_contig78.15368.1 vs. uniprot
Match: A0A7S2WUG0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUG0_9STRA)

HSP 1 Score: 408 bits (1049), Expect = 6.570e-137
Identity = 194/248 (78.23%), Postives = 217/248 (87.50%), Query Frame = 1
Query:    1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKFRKLDYAERHGYIKGVIKDIIHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGNIMPLGSMPEGTVCSSIEAKVGDRGTFARCSGDYAVLISHDEDKGTSKIRLPSGSKKTVSSDCRAMVGIVAGGGRTDKPMLKAGRAYHKYRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRG 744
            MGKV RGQRKGKG IF SHTRLR G VK R LDYAER G+ KGVIKD +HEPGRGAP+AKVQF N Y++KRDN L VAVEGMY+GQF+YCGKKA LTVGNI+PLG+MPEGT+  +IEAK GDRG  A+CSGDYAV+++HDEDKGT+++RLPSGSKKT+S+ CRA VGIVAGGGRTDKP+LKAGRA+HKYRVKRNEWP VRGVAMNPVEHP GGGNHQHIGHPST  R   AG+K GLIAARRTGRL G
Sbjct:   20 MGKVTRGQRKGKGSIFKSHTRLRVGEVKQRALDYAEREGFTKGVIKDFVHEPGRGAPVAKVQFHNAYRYKRDNNLFVAVEGMYTGQFLYCGKKAKLTVGNILPLGAMPEGTIVCNIEAKPGDRGKMAKCSGDYAVVVTHDEDKGTTRVRLPSGSKKTLSNKCRAAVGIVAGGGRTDKPLLKAGRAFHKYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTTRREDPAGKKAGLIAARRTGRLAG 267          
BLAST of mRNA_C-linearis_contig78.15368.1 vs. uniprot
Match: A0A418F530_9STRA (Ribosomal_L2_C domain-containing protein n=14 Tax=Saprolegniaceae TaxID=4764 RepID=A0A418F530_9STRA)

HSP 1 Score: 402 bits (1034), Expect = 6.610e-135
Identity = 186/251 (74.10%), Postives = 220/251 (87.65%), Query Frame = 1
Query:    1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKFRKLDYAERHGYIKGVIKDIIHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGNIMPLGSMPEGTVCSSIEAKVGDRGTFARCSGDYAVLISHDEDKGTSKIRLPSGSKKTVSSDCRAMVGIVAGGGRTDKPMLKAGRAYHKYRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIRQ 753
            MG+VIRGQRKG GGIF SH + RKG   FR  DY ER GYIKGVIK+IIH+PGRGAPLA+V F++PYK++ ++EL++A EGMY+G FIY GKKA++ VGNI+PL  +PEGT+  ++EA++GD+G FARCSGDYAV+++HDEDKG +KIRLPSGSKKT+ S CRAMVG+VAGGGRTDKP+LKAGRAYHKYRVKRNEWPHVRGVAMNPVEHP GGGNHQHIGHPST  R   AG+KVGLIAARRTGRLRGI++
Sbjct:    1 MGRVIRGQRKGAGGIFKSHVKTRKGKAAFRTNDYVEREGYIKGVIKEIIHDPGRGAPLARVSFRDPYKYRINHELLIAAEGMYTGMFIYAGKKATMAVGNILPLSQLPEGTIVCNVEARIGDKGKFARCSGDYAVIVTHDEDKGKTKIRLPSGSKKTIPSACRAMVGVVAGGGRTDKPILKAGRAYHKYRVKRNEWPHVRGVAMNPVEHPHGGGNHQHIGHPSTVKRDPPAGKKVGLIAARRTGRLRGIKK 251          
BLAST of mRNA_C-linearis_contig78.15368.1 vs. uniprot
Match: I2CPH3_NANGC (Large subunit ribosomal protein L8e n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPH3_NANGC)

HSP 1 Score: 401 bits (1030), Expect = 2.750e-134
Identity = 189/254 (74.41%), Postives = 222/254 (87.40%), Query Frame = 1
Query:    1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKFRKLDYAERHGYIKGVIKDIIHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGNIMPLGSMPEGTVCSSIEAKVGDRGTFARCSGDYAVLISHDEDKGTSKIRLPSGSKKTVSSDCRAMVGIVAGGGRTDKPMLKAGRAYHKYRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIRQEKE 762
            MGKVIR  RKG GGIF SHT+L K PVK RKLDYAE+HGYIKGV+K+I+HE GRGAP+A+VQF+N Y+FKRD E  VAVEG+YSGQFI+ GKKA+L +GN++PL  +PEGTV S++EA+ GDRG+FAR SG YAV+++ DED+GT+KIRLPSG+KKTVSS  R ++GI+AGGGRTDKPMLKAGRAYHKYRVKRNEWP VRGVAMNPVEHP GGGNHQHIGHPST  R A AG+KVGL+AARRTGRLRGI++  E
Sbjct:    1 MGKVIRTCRKGVGGIFKSHTKLNKNPVKLRKLDYAEKHGYIKGVVKEIVHESGRGAPIARVQFKNAYRFKRDTESFVAVEGIYSGQFIFAGKKAALVIGNVLPLSQIPEGTVVSNVEARPGDRGSFARTSGGYAVIVAQDEDRGTTKIRLPSGAKKTVSSSSRGVIGIIAGGGRTDKPMLKAGRAYHKYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTVKRDAPAGKKVGLVAARRTGRLRGIKKNAE 254          
BLAST of mRNA_C-linearis_contig78.15368.1 vs. uniprot
Match: K3X5U7_GLOUD (Ribosomal_L2_C domain-containing protein n=5 Tax=Eukaryota TaxID=2759 RepID=K3X5U7_GLOUD)

HSP 1 Score: 400 bits (1028), Expect = 5.320e-134
Identity = 185/251 (73.71%), Postives = 223/251 (88.84%), Query Frame = 1
Query:    1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKFRKLDYAERHGYIKGVIKDIIHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGNIMPLGSMPEGTVCSSIEAKVGDRGTFARCSGDYAVLISHDEDKGTSKIRLPSGSKKTVSSDCRAMVGIVAGGGRTDKPMLKAGRAYHKYRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIRQ 753
            MG+VIRGQRKG GGIF SHT  R+G   FR LDY ERHGYIKGV+K+IIH+ GRGAPLA+V +++PY++K ++EL++A EGMY+GQFIY G KA++TVGNI+PL ++PEGT+  ++EA+VGDRG+FAR SGDYAV+++HDEDKG +K+RLPSGSKKTV S CRAM+G+VAGGGRTDKP+LKAGRAYHKYRVKRNEWP VRGVAMNPVEHP GGGNHQHIGHPST  R A +G+KVGLIAARRTGRLRGI++
Sbjct:    1 MGRVIRGQRKGAGGIFKSHTAKRQGAAAFRSLDYVERHGYIKGVVKEIIHDSGRGAPLARVTYRDPYRYKLNHELLIAAEGMYTGQFIYSGAKAAMTVGNILPLSALPEGTIVCNVEARVGDRGSFARASGDYAVIVTHDEDKGRTKLRLPSGSKKTVPSACRAMIGVVAGGGRTDKPILKAGRAYHKYRVKRNEWPRVRGVAMNPVEHPHGGGNHQHIGHPSTVRRDAPSGKKVGLIAARRTGRLRGIKK 251          
BLAST of mRNA_C-linearis_contig78.15368.1 vs. uniprot
Match: A0A7S1U069_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U069_9STRA)

HSP 1 Score: 400 bits (1028), Expect = 5.720e-134
Identity = 186/251 (74.10%), Postives = 218/251 (86.85%), Query Frame = 1
Query:    1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKFRKLDYAERHGYIKGVIKDIIHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGNIMPLGSMPEGTVCSSIEAKVGDRGTFARCSGDYAVLISHDEDKGTSKIRLPSGSKKTVSSDCRAMVGIVAGGGRTDKPMLKAGRAYHKYRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIRQ 753
            MGKV++  RKGKG +F SHTRLRKG V+ R LD+ ER GYIKG++KDIIHEPGRGAPLAKVQF N Y++K+DN L+VA EGMY+GQFI+CGKKA L VGNI+PLG +PEGTV  ++E   GDRG   + SG Y V+I+ DEDKGT++IRLPSG+KKT+S+ CRAMVGIVAGGGRTDKP+LKAGRAYHKYRVKRNEWP +RGVA NPVEHPFGGGNHQHIGHPST NR+ SAG+KVGLIAARRTGRLRG+++
Sbjct:    1 MGKVVQACRKGKGSVFKSHTRLRKGKVQMRALDFGERTGYIKGIVKDIIHEPGRGAPLAKVQFNNAYEYKKDNTLLVAAEGMYTGQFIFCGKKAQLAVGNILPLGQLPEGTVVCNVETYAGDRGNLIKTSGGYGVVITQDEDKGTTRIRLPSGAKKTLSNKCRAMVGIVAGGGRTDKPLLKAGRAYHKYRVKRNEWPKIRGVAKNPVEHPFGGGNHQHIGHPSTTNRMCSAGKKVGLIAARRTGRLRGVKK 251          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig78.15368.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8U3_ECTSI2.710e-17496.06Ribosomal_L2_C domain-containing protein n=3 Tax=E... [more]
A0A7S2V227_9STRA3.600e-15385.26Hypothetical protein n=2 Tax=Sar TaxID=2698737 Rep... [more]
A0A835ZD66_9STRA1.170e-15181.89Translation protein SH3-like domain-containing pro... [more]
A0A7R9UAP5_9STRA1.290e-14076.10Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
F0YEL9_AURAN2.010e-13977.29Ribosomal_L2_C domain-containing protein n=1 Tax=A... [more]
A0A7S2WUG0_9STRA6.570e-13778.23Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A418F530_9STRA6.610e-13574.10Ribosomal_L2_C domain-containing protein n=14 Tax=... [more]
I2CPH3_NANGC2.750e-13474.41Large subunit ribosomal protein L8e n=1 Tax=Nannoc... [more]
K3X5U7_GLOUD5.320e-13473.71Ribosomal_L2_C domain-containing protein n=5 Tax=E... [more]
A0A7S1U069_9STRA5.720e-13474.10Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig78contigC-linearis_contig78:642100..645876 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score505.0
Seed ortholog evalue2.1e-140
Seed eggNOG ortholog2880.D7G8U3
Preferred nameRPL8
KEGG koko:K02938,ko:K09228
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0000184,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009719,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015934,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0022625,GO:0022626,GO:0030684,GO:0030687,GO:0031974,GO:0031981,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0042221,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048519,GO:0050789,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0070727,GO:0070848,GO:0070887,GO:0070972,GO:0071310,GO:0071363,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990089,GO:1990090,GO:1990904,GO:1990932
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0090@1,KOG2309@2759
Ec32 ortholog descriptionRibosomal protein L2, C-terminal
Ec32 orthologEc-15_004240.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03000,ko03011
Exons3
Model size1786
Cds size765
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig78.15368.1prot_C-linearis_contig78.15368.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig78 643121..645876 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930484.438703-UTR-C-linearis_contig78:642099..6431201622930484.438703-UTR-C-linearis_contig78:642099..643120Chordaria linearis ClinC8C monoicousUTRC-linearis_contig78 642100..643120 -
1690881093.635982-UTR-C-linearis_contig78:642099..6431201690881093.635982-UTR-C-linearis_contig78:642099..643120Chordaria linearis ClinC8C monoicousUTRC-linearis_contig78 642100..643120 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930484.4619238-CDS-C-linearis_contig78:643120..6433221622930484.4619238-CDS-C-linearis_contig78:643120..643322Chordaria linearis ClinC8C monoicousCDSC-linearis_contig78 643121..643322 -
1690881093.6519277-CDS-C-linearis_contig78:643120..6433221690881093.6519277-CDS-C-linearis_contig78:643120..643322Chordaria linearis ClinC8C monoicousCDSC-linearis_contig78 643121..643322 -
1622930484.4791706-CDS-C-linearis_contig78:644432..6447151622930484.4791706-CDS-C-linearis_contig78:644432..644715Chordaria linearis ClinC8C monoicousCDSC-linearis_contig78 644433..644715 -
1690881093.6663811-CDS-C-linearis_contig78:644432..6447151690881093.6663811-CDS-C-linearis_contig78:644432..644715Chordaria linearis ClinC8C monoicousCDSC-linearis_contig78 644433..644715 -
1622930484.498065-CDS-C-linearis_contig78:645596..6458761622930484.498065-CDS-C-linearis_contig78:645596..645876Chordaria linearis ClinC8C monoicousCDSC-linearis_contig78 645597..645876 -
1690881093.679369-CDS-C-linearis_contig78:645596..6458761690881093.679369-CDS-C-linearis_contig78:645596..645876Chordaria linearis ClinC8C monoicousCDSC-linearis_contig78 645597..645876 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig78.15368.1

>prot_C-linearis_contig78.15368.1 ID=prot_C-linearis_contig78.15368.1|Name=mRNA_C-linearis_contig78.15368.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=255bp
MGKVIRGQRKGKGGIFTSHTRLRKGPVKFRKLDYAERHGYIKGVIKDIIH
EPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGN
IMPLGSMPEGTVCSSIEAKVGDRGTFARCSGDYAVLISHDEDKGTSKIRL
PSGSKKTVSSDCRAMVGIVAGGGRTDKPMLKAGRAYHKYRVKRNEWPHVR
GVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIR
QEKE*
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mRNA from alignment at C-linearis_contig78:642100..645876-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig78.15368.1 ID=mRNA_C-linearis_contig78.15368.1|Name=mRNA_C-linearis_contig78.15368.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3777bp|location=Sequence derived from alignment at C-linearis_contig78:642100..645876- (Chordaria linearis ClinC8C monoicous)
ATGGGTAAGGTTATCCGCGGGCAGAGGAAGGGTAAGGGAGGTATCTTCAC CTCCCACACGCGCCTCCGCAAGGGGCCCGTCAAGTTCCGCAAGCTTGACT ACGCCGAGCGCCACGGCTACATCAAGGGCGTGATCAAGGACATCATCCAC GAGCCCGGAAGGGGCGCGCCCCTGGCCAAGGTCCAGTTCCAGAACCCCTA CAAGTTCAAGAGGGACAACGAGCTGATCGTTGCCGTGGAGGGCATGTACT CCGGGCAGTTCATCTACTGCGGAAAGAAGGGTGCGCTTTTTGTGACCAAA GTTCTCACCCACGCAATTTTTTTTGTGTGGGCACGAGAGGGCGGATTTGA TGGGTGGCTCCCGATAACAGCACACAGCAGCGACAGCAGCAGCACCAGCA GCAGCAGCAACGCAGAACCCTGAACACAGGCGCTTTGTGCGAATGTTGAT GGGTGGCACCCGATATCAGCCAGCTCGCCTGGGGTGTGTGCATGTGTGTG TGGATCACAGCCCCCCCTTCGCCCGGCGACGAACGCGCAATGCCTATTCT GATTTGACGCTGTCTCCCTTTCCCTCTTGCTTTTTTTCCTCTCCCTCTCG CTCTTTGGCTTTTTCTTTGCGAATGTCAGTGGACGAGAGGTGGGGATGAG AGCAGGAGGGGTGCGTGAGAGAGTGTCTTTTTGGTGTGGGCTTGACGCAA CTTGATGGATGGCGTCCGAAAACAGCCACGGCGGCGTCTGCTTGCCTTTG TGTGTTGTCTTGTTTTATACTGGTCATGCGAGTATTTTCCGCAGTCCGAG GTGTACGAGAAATCGGGTGTGGTGTTTTTGACAAGTCTCTTGCCAGGTTC TTGGGAGTCTGTCGTGCTAACATTTGGTATGCGCTGCCCCACGGGTGTAA GTGCTTATACCCGCCGCTGATTTGTGATTGTACGGTGTGGGCACGTCATG CTCCTCCTTCTCAGAAGGCAATAGCGTTGAGGGTGGCATGGTTCGGCGGA TGGTTTCGGTCGTACTGAAAATGCTATGCGCCTGCACTGAGCCCCCCCCC CCCCCCCCCCCCACGTCCGCTGATTTCGTTCCCCGCCGCCAATTTGCTGC CCCTTCTCCCCAACTTCCATCAATCGATCCCACGAACGGCCTGGCTCCAA CACCCAAACAGCTTCCCTCACCGTGGGCAACATCATGCCCCTGGGCTCCA TGCCCGAGGGTACCGTGTGCTCCTCGATCGAGGCCAAGGTCGGCGACCGC GGCACCTTCGCTCGTTGCTCCGGCGACTACGCCGTGCTCATCTCCCACGA CGAAGACAAGGGCACCTCCAAGATCCGCCTCCCGTCGGGCTCCAAGAAGA CCGTGAGCTCGGACTGCCGCGCCATGGTCGGCATCGTCGCCGGCGGCGGC AGGACCGACAAGCCCATGCTTAAGGCCGGCCGCGCCTACCACAAGTGAGT AATTGTTTTTTTTTAGTTGGGAGTTGTTGCAGTATTGTATCGTACGTATG TGTACCGGTATGATTGTGTGTGTGTTGACGTCGTCGGTTTCTGTTTTGGT CGGAGCTCATTGACCTCCGCTCGCGTTTATCGGTTTTAGTTGGGAGCCAA ATTAACGAGCGTCGTGTTTTTTGTTCGACCTCAAACGTGCGAGCTGTAGG CTTGGTAGCCATGAAGAAATCGCGCTCCCGAGACTGACATGGAGCACTGC TGGACCGGGGGAGCTTCTTGGAGTGAACGGGGAGTAGTGGTGGTGTTTGT TTTTGCTTTTTTTTTAGTAGTGCCGACAAGCCAGGAGCCGAAACACTCGA GGAAAAGCGCTGCTGTAAGTGTTGTAAACATAATATTCATGCCACTCAGA TCACGGACGGTGCTTACGTTTGGCTCGTCTTTTTTTGGAGTACATGAAGG GGGCCCGCCCCACACTCATGGGTTGAATGAACAGCCAGTTGTCCATGAGA CCGGTGTCGGTTTCCCGAGATGGTCTCAGTTCCTGCTTTCATTTTCCCTT GCAAGAGTAGGCTTCCGTGGGGAGGGGGGTGGCTTGTGTTTCCGTTTTTT TCATCTTGACTCCAAAGCTCGCGGTTATAACGAGGCCGTTTCCCTAGGAG GTTTGTCGTGTGCATGCTAAGGGTGCACATGACGCCCCCCCCATCTGGAG CGTCTGCCCGCGACTGTCCTGGCGCAGGCCTGATTTTTTTTTCTAGATCG TTGCGCTGCTTTTGTTGTCCGTTGGCTCCCCCCTCCCCTTCTGCCGGCCT TTTCGAAGCCGTTGTCGCGGGGCGGTGGGTGTTGGAAGTGTTTCATTTGA ATGAACGTCCTTACAAAAACCCCAACGAGTTTCGCCCTTCTTTTTTGTTT TGCTCCTCCTTTTTGACCCCCCCGTCTCTAATCGCCCCTATCCCCCCCCC CCCCGGAATTCAACCACCAAATCCGTCAAAACTCTCTGTCCCTCGCCGGG GTATTCATCGCAGCAAGGATGACTCCAAATCAACTAACCAAAAAATACCA CAACGGCTCTGCCCCCCCCCTACCCTTCCTTGTCCATCCTTTTGTTTCTC TCAGGTACCGCGTCAAGCGCAACGAGTGGCCCCACGTGCGTGGTGTGGCG ATGAACCCGGTGGAGCACCCCTTCGGTGGTGGTAACCACCAGCACATCGG GCACCCCTCCACGGCCAACCGCCTGGCCTCGGCCGGACAGAAGGTCGGCC TCATCGCCGCCCGCCGCACGGGCCGCCTGAGGGGCATCCGCCAGGAGAAG GAATAAGCAAGCCTCTAGAAGCTTGTAGTTCCTGACCCTGTGATCTTGGC TGGTCTCTCTGTTTCCCGTCTCCGGAGATTATTATTGTGCCATCGTGCAT GGTTTGGTTTTTTGTTACACATGAAGGGGAGATTGGTGGAACTTGAACTT GAGAACCCTCGGCCGTCAGAGGGGGGATGGAGATAAGCACATTGAGCTTG GATGTTTGTTTCTGCCGCTTGGAGAGAAGTTGTGGTCCCTTTGGTAAACT TGGGTCGATAAGGATTACAAGGGCTTTTGGGGGGGGTGCTTTGAAGTGCA GGGGGAGACGTCTCTGTTCGTTCTGTATTTTCTTCTTCTCTCTGCGGCAT GTTTTTTTTCGTGGGGGTCACCTGCTCTCTCTCGCTAGCCACGGGAGAGG CATCAAGGTCTGTTCGCTCTGGGTCGAAGCACGACAACTAAACAAAATAA AATGATAAAAACCAATAAAAAAACGCGTAAACAAAGTTATCCAAGGTGTT GTTGCCTGTCCCTCGCTGTTTTCAGTGATTGCGGACGGTGCCTCGGTCTT TTGTTCTTTTCTCTGGATGCGTTCGCTTTTGCTCTTGAAAGGCGGGCATC ACAGAGAGGAGAGGTATGTCGCTCCAACAAAAACTAGCGATCGATTCATC CTCCTCTGTCTTGTGTTTTGTTTGGACAGCAGCATATGCCCGCTTTTTTT TTTCAGGCCGCGGGGTAATGTGTCGCCACTAGCACCCCGCCGCGAGATGC TGTACGTACGTACGAGTGGCGTCGTTTTGATTTTGGGCGATGCGCGATCA CTTCCAACCCTCTCCGGAGATTTCCCCACCTCAAAAAACGACGAGTCTTG TATCGCGGCACCCGAATAGATGTGCATAAACAAATGGATCCCTATTTTCG GCTGGGTGCTTTCCCGACAGAGAAGGCGTCGTGTCGAGGTACACAAGAAC AACCGGTGGACTACTTGTAGTGGTTTAACCTCGAACCCACTAGCAGCAAA GTCTGGAGTTCGATTCCAAGCAAAAGT
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Coding sequence (CDS) from alignment at C-linearis_contig78:642100..645876-

>mRNA_C-linearis_contig78.15368.1 ID=mRNA_C-linearis_contig78.15368.1|Name=mRNA_C-linearis_contig78.15368.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1530bp|location=Sequence derived from alignment at C-linearis_contig78:642100..645876- (Chordaria linearis ClinC8C monoicous)
ATGGGTAAGGTTATCCGCGGGCAGAGGAAGGGTAAGGGAGGTATCTTCAC
CTCCCACACGCGCCTCCGCAAGGGGCCCGTCAAGTTCCGCAAGCTTGACT
ACGCCGAGCGCCACGGCTACATCAAGGGCGTGATCAAGGACATCATCCAC
GAGCCCGGAAGGGGCGCGCCCCTGGCCAAGGTCCAGTTCCAGAACCCCTA
CAAGTTCAAGAGGGACAACGAGCTGATCGTTGCCGTGGAGGGCATGTACT
CCGGGCAGTTCATCTACTGCGGAAAGAAGGATGGGTAAGGTTATCCGCGG
GCAGAGGAAGGGTAAGGGAGGTATCTTCACCTCCCACACGCGCCTCCGCA
AGGGGCCCGTCAAGTTCCGCAAGCTTGACTACGCCGAGCGCCACGGCTAC
ATCAAGGGCGTGATCAAGGACATCATCCACGAGCCCGGAAGGGGCGCGCC
CCTGGCCAAGGTCCAGTTCCAGAACCCCTACAAGTTCAAGAGGGACAACG
AGCTGATCGTTGCCGTGGAGGGCATGTACTCCGGGCAGTTCATCTACTGC
GGAAAGAAGGCTTCCCTCACCGTGGGCAACATCATGCCCCTGGGCTCCAT
GCCCGAGGGTACCGTGTGCTCCTCGATCGAGGCCAAGGTCGGCGACCGCG
GCACCTTCGCTCGTTGCTCCGGCGACTACGCCGTGCTCATCTCCCACGAC
GAAGACAAGGGCACCTCCAAGATCCGCCTCCCGTCGGGCTCCAAGAAGAC
CGTGAGCTCGGACTGCCGCGCCATGGTCGGCATCGTCGCCGGCGGCGGCA
GGACCGACAAGCCCATGCTTAAGGCCGGCCGCGCCTACCACAACTTCCCT
CACCGTGGGCAACATCATGCCCCTGGGCTCCATGCCCGAGGGTACCGTGT
GCTCCTCGATCGAGGCCAAGGTCGGCGACCGCGGCACCTTCGCTCGTTGC
TCCGGCGACTACGCCGTGCTCATCTCCCACGACGAAGACAAGGGCACCTC
CAAGATCCGCCTCCCGTCGGGCTCCAAGAAGACCGTGAGCTCGGACTGCC
GCGCCATGGTCGGCATCGTCGCCGGCGGCGGCAGGACCGACAAGCCCATG
CTTAAGGCCGGCCGCGCCTACCACAAGTACCGCGTCAAGCGCAACGAGTG
GCCCCACGTGCGTGGTGTGGCGATGAACCCGGTGGAGCACCCCTTCGGTG
GTGGTAACCACCAGCACATCGGGCACCCCTCCACGGCCAACCGCCTGGCC
TCGGCCGGACAGAAGGTCGGCCTCATCGCCGCCCGCCGCACGGGCCGCCT
GAGGGGCATCCGCCAGGAGAAGGAATAAGTACCGCGTCAAGCGCAACGAG
TGGCCCCACGTGCGTGGTGTGGCGATGAACCCGGTGGAGCACCCCTTCGG
TGGTGGTAACCACCAGCACATCGGGCACCCCTCCACGGCCAACCGCCTGG
CCTCGGCCGGACAGAAGGTCGGCCTCATCGCCGCCCGCCGCACGGGCCGC
CTGAGGGGCATCCGCCAGGAGAAGGAATAA
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