mRNA_C-linearis_contig78.15368.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig78.15368.1 vs. uniprot
Match: D7G8U3_ECTSI (Ribosomal_L2_C domain-containing protein n=3 Tax=Eukaryota TaxID=2759 RepID=D7G8U3_ECTSI) HSP 1 Score: 503 bits (1294), Expect = 2.710e-174 Identity = 244/254 (96.06%), Postives = 251/254 (98.82%), Query Frame = 1
Query: 1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKFRKLDYAERHGYIKGVIKDIIHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGNIMPLGSMPEGTVCSSIEAKVGDRGTFARCSGDYAVLISHDEDKGTSKIRLPSGSKKTVSSDCRAMVGIVAGGGRTDKPMLKAGRAYHKYRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIRQEKE 762
MGKVIRGQRKGKGGIFTSHTRLRKGPVK RKLDYAERHGYIKGV+KD+IHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGNIMP+ SMPEGTVCSSIEAKVGDRGTFARCSGDYAVLISHDE+KGTSK+RLPSGSKKT+SSDCRAMVGIVAGGGRTDKPMLKAGRAYHK+RVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIR EKE
Sbjct: 1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKDLIHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGNIMPVRSMPEGTVCSSIEAKVGDRGTFARCSGDYAVLISHDEEKGTSKLRLPSGSKKTISSDCRAMVGIVAGGGRTDKPMLKAGRAYHKFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIRTEKE 254
BLAST of mRNA_C-linearis_contig78.15368.1 vs. uniprot
Match: A0A7S2V227_9STRA (Hypothetical protein n=2 Tax=Sar TaxID=2698737 RepID=A0A7S2V227_9STRA) HSP 1 Score: 449 bits (1155), Expect = 3.600e-153 Identity = 214/251 (85.26%), Postives = 234/251 (93.23%), Query Frame = 1
Query: 1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKFRKLDYAERHGYIKGVIKDIIHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGNIMPLGSMPEGTVCSSIEAKVGDRGTFARCSGDYAVLISHDEDKGTSKIRLPSGSKKTVSSDCRAMVGIVAGGGRTDKPMLKAGRAYHKYRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIRQ 753
MGKVIRGQRKGKG +F SHT+ RKG VKFRKLDYAERHGY+KGV+K I+HEPGRGAPLA V F+NPY+FK+D EL+VAVEGMYSG FIYCGKKA LT+GNIMP+G+MPEGTVC +IEA GDRGTFARCSGDYAV+ISHDEDKGTS+IRLPSGSKKT+ S CRAMVGIVAGGGRTDKPMLKAGRAYHKYRVKRNEWP VRGVAMNPVEHP GGGNHQHIGHPST+NRLASAG+KVGLIAARRTGRLRGI++
Sbjct: 1 MGKVIRGQRKGKGSVFVSHTKNRKGAVKFRKLDYAERHGYVKGVVKQILHEPGRGAPLAVVAFKNPYRFKKDTELMVAVEGMYSGMFIYCGKKAILTIGNIMPVGAMPEGTVCCNIEAAPGDRGTFARCSGDYAVVISHDEDKGTSRIRLPSGSKKTIKSLCRAMVGIVAGGGRTDKPMLKAGRAYHKYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTSNRLASAGKKVGLIAARRTGRLRGIKK 251
BLAST of mRNA_C-linearis_contig78.15368.1 vs. uniprot
Match: A0A835ZD66_9STRA (Translation protein SH3-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD66_9STRA) HSP 1 Score: 445 bits (1145), Expect = 1.170e-151 Identity = 208/254 (81.89%), Postives = 236/254 (92.91%), Query Frame = 1
Query: 1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKFRKLDYAERHGYIKGVIKDIIHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGNIMPLGSMPEGTVCSSIEAKVGDRGTFARCSGDYAVLISHDEDKGTSKIRLPSGSKKTVSSDCRAMVGIVAGGGRTDKPMLKAGRAYHKYRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIRQEKE 762
MGKVIRG RKG+G +FTSHTRLRKGPVK RKLDYAERHGYIKGV+K+IIHEP RGAP+AK+QFQNPY++K+DNELIVA EGMY+G FIYCGKKA LTVGNI+P+GSMPEG+V ++E++ GDRG+ ARCSGDYAV+++HDEDKGT+KIRLPSGSKKT+ S+CRAMVGI+AGGGRTDKP+LKAGRAYHKYRVKRNEWP VRGVAMNPVEHP GGGNHQHIGHPST RLASAGQKVGLIAARRTGRLRGI++ E
Sbjct: 1 MGKVIRGCRKGRGTVFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKEIIHEPARGAPIAKIQFQNPYEYKKDNELIVAAEGMYTGMFIYCGKKAQLTVGNILPVGSMPEGSVICNVESRPGDRGSLARCSGDYAVVVTHDEDKGTTKIRLPSGSKKTIFSNCRAMVGIIAGGGRTDKPLLKAGRAYHKYRVKRNEWPRVRGVAMNPVEHPHGGGNHQHIGHPSTTKRLASAGQKVGLIAARRTGRLRGIKKTSE 254
BLAST of mRNA_C-linearis_contig78.15368.1 vs. uniprot
Match: A0A7R9UAP5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAP5_9STRA) HSP 1 Score: 417 bits (1072), Expect = 1.290e-140 Identity = 191/251 (76.10%), Postives = 227/251 (90.44%), Query Frame = 1
Query: 1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKFRKLDYAERHGYIKGVIKDIIHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGNIMPLGSMPEGTVCSSIEAKVGDRGTFARCSGDYAVLISHDEDKGTSKIRLPSGSKKTVSSDCRAMVGIVAGGGRTDKPMLKAGRAYHKYRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIRQ 753
MGKV+RG RKGKG +F SHTRLRKGP K R+LD++ER GY+KG++K+I+HEPGRGAPLA++QFQNPYK+++DNEL+V EGMYSGQFI+CGKKA L+VGNI+PLG +PEGTV ++E+ +GDRG + SG Y V+I+ DEDKGTS+IRLPSG+KKT+S+ CRAMVGIVAGGGRTDKPMLKAGRAYHKYRVKRNEWP VRGVAMNPVEHPFGGGNHQHIGHPST NR+ SAG+KVGLIAARRTGRLRG+++
Sbjct: 1 MGKVVRGCRKGKGSVFKSHTRLRKGPAKLRRLDFSERTGYVKGLVKEILHEPGRGAPLARIQFQNPYKYQKDNELMVCAEGMYSGQFIFCGKKADLSVGNILPLGQLPEGTVVCNVESYIGDRGNLIKTSGGYGVVITQDEDKGTSRIRLPSGAKKTLSNKCRAMVGIVAGGGRTDKPMLKAGRAYHKYRVKRNEWPKVRGVAMNPVEHPFGGGNHQHIGHPSTTNRMCSAGKKVGLIAARRTGRLRGVKK 251
BLAST of mRNA_C-linearis_contig78.15368.1 vs. uniprot
Match: F0YEL9_AURAN (Ribosomal_L2_C domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YEL9_AURAN) HSP 1 Score: 414 bits (1064), Expect = 2.010e-139 Identity = 194/251 (77.29%), Postives = 221/251 (88.05%), Query Frame = 1
Query: 1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKFRKLDYAERHGYIKGVIKDIIHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGNIMPLGSMPEGTVCSSIEAKVGDRGTFARCSGDYAVLISHDEDKGTSKIRLPSGSKKTVSSDCRAMVGIVAGGGRTDKPMLKAGRAYHKYRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIRQ 753
MGKVIRG RKGKG IFT+HTRLRKGPVK RK DYAE+ GY+KGV+K I+HE GRGAP+AKVQFQN Y+F+RDNEL VA EG+Y G FIYCG KA L VGN++P+ ++PEGTV + EA+ GDRG FARCSGDYAV+++HDED GT+K+RLPSG KKTV S CRAM+GIVAGGGRTDKPMLKAGRAYHKYRVKRNEWP VRGVAMNPVEHP GGGNHQHIGHPST R+ SAG+KVGLIAARRTGRLRG+++
Sbjct: 1 MGKVIRGCRKGKGTIFTAHTRLRKGPVKLRKADYAEKTGYVKGVVKAIVHESGRGAPIAKVQFQNSYRFQRDNELFVAAEGLYEGAFIYCGAKAQLAVGNVLPISAIPEGTVICNAEARPGDRGAFARCSGDYAVVVTHDEDHGTTKLRLPSGGKKTVKSVCRAMIGIVAGGGRTDKPMLKAGRAYHKYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTTKRICSAGKKVGLIAARRTGRLRGLKK 251
BLAST of mRNA_C-linearis_contig78.15368.1 vs. uniprot
Match: A0A7S2WUG0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUG0_9STRA) HSP 1 Score: 408 bits (1049), Expect = 6.570e-137 Identity = 194/248 (78.23%), Postives = 217/248 (87.50%), Query Frame = 1
Query: 1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKFRKLDYAERHGYIKGVIKDIIHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGNIMPLGSMPEGTVCSSIEAKVGDRGTFARCSGDYAVLISHDEDKGTSKIRLPSGSKKTVSSDCRAMVGIVAGGGRTDKPMLKAGRAYHKYRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRG 744
MGKV RGQRKGKG IF SHTRLR G VK R LDYAER G+ KGVIKD +HEPGRGAP+AKVQF N Y++KRDN L VAVEGMY+GQF+YCGKKA LTVGNI+PLG+MPEGT+ +IEAK GDRG A+CSGDYAV+++HDEDKGT+++RLPSGSKKT+S+ CRA VGIVAGGGRTDKP+LKAGRA+HKYRVKRNEWP VRGVAMNPVEHP GGGNHQHIGHPST R AG+K GLIAARRTGRL G
Sbjct: 20 MGKVTRGQRKGKGSIFKSHTRLRVGEVKQRALDYAEREGFTKGVIKDFVHEPGRGAPVAKVQFHNAYRYKRDNNLFVAVEGMYTGQFLYCGKKAKLTVGNILPLGAMPEGTIVCNIEAKPGDRGKMAKCSGDYAVVVTHDEDKGTTRVRLPSGSKKTLSNKCRAAVGIVAGGGRTDKPLLKAGRAFHKYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTTRREDPAGKKAGLIAARRTGRLAG 267
BLAST of mRNA_C-linearis_contig78.15368.1 vs. uniprot
Match: A0A418F530_9STRA (Ribosomal_L2_C domain-containing protein n=14 Tax=Saprolegniaceae TaxID=4764 RepID=A0A418F530_9STRA) HSP 1 Score: 402 bits (1034), Expect = 6.610e-135 Identity = 186/251 (74.10%), Postives = 220/251 (87.65%), Query Frame = 1
Query: 1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKFRKLDYAERHGYIKGVIKDIIHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGNIMPLGSMPEGTVCSSIEAKVGDRGTFARCSGDYAVLISHDEDKGTSKIRLPSGSKKTVSSDCRAMVGIVAGGGRTDKPMLKAGRAYHKYRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIRQ 753
MG+VIRGQRKG GGIF SH + RKG FR DY ER GYIKGVIK+IIH+PGRGAPLA+V F++PYK++ ++EL++A EGMY+G FIY GKKA++ VGNI+PL +PEGT+ ++EA++GD+G FARCSGDYAV+++HDEDKG +KIRLPSGSKKT+ S CRAMVG+VAGGGRTDKP+LKAGRAYHKYRVKRNEWPHVRGVAMNPVEHP GGGNHQHIGHPST R AG+KVGLIAARRTGRLRGI++
Sbjct: 1 MGRVIRGQRKGAGGIFKSHVKTRKGKAAFRTNDYVEREGYIKGVIKEIIHDPGRGAPLARVSFRDPYKYRINHELLIAAEGMYTGMFIYAGKKATMAVGNILPLSQLPEGTIVCNVEARIGDKGKFARCSGDYAVIVTHDEDKGKTKIRLPSGSKKTIPSACRAMVGVVAGGGRTDKPILKAGRAYHKYRVKRNEWPHVRGVAMNPVEHPHGGGNHQHIGHPSTVKRDPPAGKKVGLIAARRTGRLRGIKK 251
BLAST of mRNA_C-linearis_contig78.15368.1 vs. uniprot
Match: I2CPH3_NANGC (Large subunit ribosomal protein L8e n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPH3_NANGC) HSP 1 Score: 401 bits (1030), Expect = 2.750e-134 Identity = 189/254 (74.41%), Postives = 222/254 (87.40%), Query Frame = 1
Query: 1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKFRKLDYAERHGYIKGVIKDIIHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGNIMPLGSMPEGTVCSSIEAKVGDRGTFARCSGDYAVLISHDEDKGTSKIRLPSGSKKTVSSDCRAMVGIVAGGGRTDKPMLKAGRAYHKYRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIRQEKE 762
MGKVIR RKG GGIF SHT+L K PVK RKLDYAE+HGYIKGV+K+I+HE GRGAP+A+VQF+N Y+FKRD E VAVEG+YSGQFI+ GKKA+L +GN++PL +PEGTV S++EA+ GDRG+FAR SG YAV+++ DED+GT+KIRLPSG+KKTVSS R ++GI+AGGGRTDKPMLKAGRAYHKYRVKRNEWP VRGVAMNPVEHP GGGNHQHIGHPST R A AG+KVGL+AARRTGRLRGI++ E
Sbjct: 1 MGKVIRTCRKGVGGIFKSHTKLNKNPVKLRKLDYAEKHGYIKGVVKEIVHESGRGAPIARVQFKNAYRFKRDTESFVAVEGIYSGQFIFAGKKAALVIGNVLPLSQIPEGTVVSNVEARPGDRGSFARTSGGYAVIVAQDEDRGTTKIRLPSGAKKTVSSSSRGVIGIIAGGGRTDKPMLKAGRAYHKYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTVKRDAPAGKKVGLVAARRTGRLRGIKKNAE 254
BLAST of mRNA_C-linearis_contig78.15368.1 vs. uniprot
Match: K3X5U7_GLOUD (Ribosomal_L2_C domain-containing protein n=5 Tax=Eukaryota TaxID=2759 RepID=K3X5U7_GLOUD) HSP 1 Score: 400 bits (1028), Expect = 5.320e-134 Identity = 185/251 (73.71%), Postives = 223/251 (88.84%), Query Frame = 1
Query: 1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKFRKLDYAERHGYIKGVIKDIIHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGNIMPLGSMPEGTVCSSIEAKVGDRGTFARCSGDYAVLISHDEDKGTSKIRLPSGSKKTVSSDCRAMVGIVAGGGRTDKPMLKAGRAYHKYRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIRQ 753
MG+VIRGQRKG GGIF SHT R+G FR LDY ERHGYIKGV+K+IIH+ GRGAPLA+V +++PY++K ++EL++A EGMY+GQFIY G KA++TVGNI+PL ++PEGT+ ++EA+VGDRG+FAR SGDYAV+++HDEDKG +K+RLPSGSKKTV S CRAM+G+VAGGGRTDKP+LKAGRAYHKYRVKRNEWP VRGVAMNPVEHP GGGNHQHIGHPST R A +G+KVGLIAARRTGRLRGI++
Sbjct: 1 MGRVIRGQRKGAGGIFKSHTAKRQGAAAFRSLDYVERHGYIKGVVKEIIHDSGRGAPLARVTYRDPYRYKLNHELLIAAEGMYTGQFIYSGAKAAMTVGNILPLSALPEGTIVCNVEARVGDRGSFARASGDYAVIVTHDEDKGRTKLRLPSGSKKTVPSACRAMIGVVAGGGRTDKPILKAGRAYHKYRVKRNEWPRVRGVAMNPVEHPHGGGNHQHIGHPSTVRRDAPSGKKVGLIAARRTGRLRGIKK 251
BLAST of mRNA_C-linearis_contig78.15368.1 vs. uniprot
Match: A0A7S1U069_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U069_9STRA) HSP 1 Score: 400 bits (1028), Expect = 5.720e-134 Identity = 186/251 (74.10%), Postives = 218/251 (86.85%), Query Frame = 1
Query: 1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKFRKLDYAERHGYIKGVIKDIIHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGNIMPLGSMPEGTVCSSIEAKVGDRGTFARCSGDYAVLISHDEDKGTSKIRLPSGSKKTVSSDCRAMVGIVAGGGRTDKPMLKAGRAYHKYRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIRQ 753
MGKV++ RKGKG +F SHTRLRKG V+ R LD+ ER GYIKG++KDIIHEPGRGAPLAKVQF N Y++K+DN L+VA EGMY+GQFI+CGKKA L VGNI+PLG +PEGTV ++E GDRG + SG Y V+I+ DEDKGT++IRLPSG+KKT+S+ CRAMVGIVAGGGRTDKP+LKAGRAYHKYRVKRNEWP +RGVA NPVEHPFGGGNHQHIGHPST NR+ SAG+KVGLIAARRTGRLRG+++
Sbjct: 1 MGKVVQACRKGKGSVFKSHTRLRKGKVQMRALDFGERTGYIKGIVKDIIHEPGRGAPLAKVQFNNAYEYKKDNTLLVAAEGMYTGQFIFCGKKAQLAVGNILPLGQLPEGTVVCNVETYAGDRGNLIKTSGGYGVVITQDEDKGTTRIRLPSGAKKTLSNKCRAMVGIVAGGGRTDKPLLKAGRAYHKYRVKRNEWPKIRGVAKNPVEHPFGGGNHQHIGHPSTTNRMCSAGKKVGLIAARRTGRLRGVKK 251 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig78.15368.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig78.15368.1 >prot_C-linearis_contig78.15368.1 ID=prot_C-linearis_contig78.15368.1|Name=mRNA_C-linearis_contig78.15368.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=255bp MGKVIRGQRKGKGGIFTSHTRLRKGPVKFRKLDYAERHGYIKGVIKDIIHback to top mRNA from alignment at C-linearis_contig78:642100..645876- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig78.15368.1 ID=mRNA_C-linearis_contig78.15368.1|Name=mRNA_C-linearis_contig78.15368.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3777bp|location=Sequence derived from alignment at C-linearis_contig78:642100..645876- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig78:642100..645876- >mRNA_C-linearis_contig78.15368.1 ID=mRNA_C-linearis_contig78.15368.1|Name=mRNA_C-linearis_contig78.15368.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1530bp|location=Sequence derived from alignment at C-linearis_contig78:642100..645876- (Chordaria linearis ClinC8C monoicous)back to top |