mRNA_C-linearis_contig78.15349.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig78.15349.1
Unique NamemRNA_C-linearis_contig78.15349.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig78.15349.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig78contigC-linearis_contig78:235841..236442 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size602
Cds size315
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig78.15349.1prot_C-linearis_contig78.15349.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig78 235956..236270 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930477.6532447-UTR-C-linearis_contig78:235840..2359551622930477.6532447-UTR-C-linearis_contig78:235840..235955Chordaria linearis ClinC8C monoicousUTRC-linearis_contig78 235841..235955 +
1690881089.895398-UTR-C-linearis_contig78:235840..2359551690881089.895398-UTR-C-linearis_contig78:235840..235955Chordaria linearis ClinC8C monoicousUTRC-linearis_contig78 235841..235955 +
1622930477.6883304-UTR-C-linearis_contig78:236270..2364421622930477.6883304-UTR-C-linearis_contig78:236270..236442Chordaria linearis ClinC8C monoicousUTRC-linearis_contig78 236271..236442 +
1690881089.9208324-UTR-C-linearis_contig78:236270..2364421690881089.9208324-UTR-C-linearis_contig78:236270..236442Chordaria linearis ClinC8C monoicousUTRC-linearis_contig78 236271..236442 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930477.6737022-CDS-C-linearis_contig78:235955..2362701622930477.6737022-CDS-C-linearis_contig78:235955..236270Chordaria linearis ClinC8C monoicousCDSC-linearis_contig78 235956..236270 +
1690881089.906686-CDS-C-linearis_contig78:235955..2362701690881089.906686-CDS-C-linearis_contig78:235955..236270Chordaria linearis ClinC8C monoicousCDSC-linearis_contig78 235956..236270 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig78.15349.1

>prot_C-linearis_contig78.15349.1 ID=prot_C-linearis_contig78.15349.1|Name=mRNA_C-linearis_contig78.15349.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=105bp
MLALVPDRRHTACTHDGIRHARISYVVIYVVMNKSTVRQHTSTTHAHVPR
TTIFSSTGSPSTHKQPPPGPDSTETSLKNRRKRRGDSFDICDNACSPKNA
KTPP*
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mRNA from alignment at C-linearis_contig78:235841..236442+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig78.15349.1 ID=mRNA_C-linearis_contig78.15349.1|Name=mRNA_C-linearis_contig78.15349.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=602bp|location=Sequence derived from alignment at C-linearis_contig78:235841..236442+ (Chordaria linearis ClinC8C monoicous)
CCGCAGTCTGGTCAGCAGTCTGGTCAGGGGTTGGGTGCGCAACAGGCGTG
GCAGGGAACACCAAAACAAGTCGGTCCCTCTGCGTAGATCAAGACTTGTG
CTAAATAGGCTCTCCATGCTCGCATTGGTGCCCGATCGACGGCATACGGC
ATGCACGCACGACGGCATACGGCATGCACGTATATCATACGTCGTAATTT
ATGTGGTCATGAATAAAAGCACCGTACGCCAACATACTTCCACGACACAC
GCACACGTCCCAAGAACGACCATCTTCAGTTCGACTGGTAGCCCCAGTAC
GCACAAACAACCGCCCCCAGGGCCAGACTCCACCGAAACAAGTCTCAAAA
ACCGGCGTAAAAGAAGAGGCGATAGCTTTGACATTTGTGATAACGCATGT
AGCCCAAAGAACGCGAAGACGCCACCATAAAAGGAGTTTACGAAGAAACT
GGCCTTCTCAACAGCAGTCCTTCGTCACAGCCACAAAAGGTCCCACGCTG
CAGAGAGGCAAAAACCTCGATGCTCCAAAGGCCACCACAGCTATCGCCCG
CCCCACACGACGAAACTACCCCCCCCCACGAAGACCTAGAAGAGAGACGC
AA
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Coding sequence (CDS) from alignment at C-linearis_contig78:235841..236442+

>mRNA_C-linearis_contig78.15349.1 ID=mRNA_C-linearis_contig78.15349.1|Name=mRNA_C-linearis_contig78.15349.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at C-linearis_contig78:235841..236442+ (Chordaria linearis ClinC8C monoicous)
ATGCTCGCATTGGTGCCCGATCGACGGCATACGGCATGCACGCACGACGG
CATACGGCATGCACGTATATCATACGTCGTAATTTATGTGGTCATGAATA
AAAGCACCGTACGCCAACATACTTCCACGACACACGCACACGTCCCAAGA
ACGACCATCTTCAGTTCGACTGGTAGCCCCAGTACGCACAAACAACCGCC
CCCAGGGCCAGACTCCACCGAAACAAGTCTCAAAAACCGGCGTAAAAGAA
GAGGCGATAGCTTTGACATTTGTGATAACGCATGTAGCCCAAAGAACGCG
AAGACGCCACCATAAATGCTCGCATTGGTGCCCGATCGACGGCATACGGC
ATGCACGCACGACGGCATACGGCATGCACGTATATCATACGTCGTAATTT
ATGTGGTCATGAATAAAAGCACCGTACGCCAACATACTTCCACGACACAC
GCACACGTCCCAAGAACGACCATCTTCAGTTCGACTGGTAGCCCCAGTAC
GCACAAACAACCGCCCCCAGGGCCAGACTCCACCGAAACAAGTCTCAAAA
ACCGGCGTAAAAGAAGAGGCGATAGCTTTGACATTTGTGATAACGCATGT
AGCCCAAAGAACGCGAAGACGCCACCATAA
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