mRNA_C-linearis_contig78.15347.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig78.15347.1 vs. uniprot
Match: D7G7F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7F9_ECTSI) HSP 1 Score: 119 bits (298), Expect = 7.390e-28 Identity = 70/157 (44.59%), Postives = 92/157 (58.60%), Query Frame = 3
Query: 492 MSSEGTSQYVDALTIALKEACRGGEKRWYTSTLELQLASLELCRACRRVPTLVVCVDDQTPRTLWYRHETDNKAGSDMRSLKVHITSRVHVVRALGVEWELSRKVLMRSAAMETWEGSLERIWFGHDFNERITGVVWPVVSLQKLSLGVCFNQPVAR 962
M +EG ++ DA IAL +AC GGEKRWYTST ELQL SL++CRACR PTL V V TP +LW +A + +S KV + SRV VVRAL + W S + L++ AA+E W S G + VVWP+ L +L L F+ P+ +
Sbjct: 1 MPTEGYTRSFDAFAIALSQACEGGEKRWYTSTTELQLGSLDICRACRSTPTLHVRVTGGTPTSLWSPPTV--QALPNTQSSKVRVVSRVPVVRALRLTWAFSMETLVQRAAIELWSRSERLEMVGPLCAASLGSVVWPL-GLTQLVLDTDFHIPMEK 154
BLAST of mRNA_C-linearis_contig78.15347.1 vs. uniprot
Match: A0A6H5LIJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LIJ3_9PHAE) HSP 1 Score: 123 bits (309), Expect = 4.090e-26 Identity = 68/136 (50.00%), Postives = 84/136 (61.76%), Query Frame = 3
Query: 501 EGTSQYVDALTIALKEACRGGEKRWYTSTLELQLASLELCRACRRVPTLVVCVDDQTPRTLWYRHETDNKAGSDMRSLKVHITSRVHVVRALGVEWELSRKVLMRSAAMETWEGSLERIWFGHDFNERI-TGVVWP 905
E ++ +DA IAL +AC GGEKRWY STLELQL SL+LCRACR L V VDDQTPR+LW + + RS +HI+SRV VVRAL + W LS + L+R AA+E W S G + + VVWP
Sbjct: 6 EWRTRCLDAFVIALSQACEGGEKRWYASTLELQLTSLDLCRACRTTSILHVHVDDQTPRSLWSSRTAQTRPNT--RSWNLHISSRVPVVRALRLTWALSMEALLRKAAIELWTWSERLELLGSSCVSSLGSEVVWP 139
BLAST of mRNA_C-linearis_contig78.15347.1 vs. uniprot
Match: A0A6H5KNI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNI6_9PHAE) HSP 1 Score: 123 bits (309), Expect = 5.890e-26 Identity = 77/178 (43.26%), Postives = 98/178 (55.06%), Query Frame = 3
Query: 492 MSSEGTSQYVDALTIALKEACRGGEKRWYTSTLELQLASLELCRACRRVPTLVVCVDDQTPRTLWYRHETDNKAGSDMRSLKVHITSRVHVVRALGVEWELSRKVLMRSAAMETWEGSLERIWFGHDFNERITGVVWPV-------------------VSLQKLSLGVCFNQPVARVA 968
M+++G S+ +DA +AL +AC G EKRWY STLELQL SLE+C ACRRV TL V V QTP +LW+ + N ++ RS KV I+SRV VV+A G+ W L VL + +A E GS R H + VWP SLQ+LS G FNQ + VA
Sbjct: 1 MTTKGNSKCLDAFVVALNQACDGQEKRWYVSTLELQLVSLEVCGACRRVQTLHVRVKPQTPPSLWF--PSQNHTTTNNRSPKVCISSRVPVVQAFGLTWALPMGVLQQRSATEVRSGSGCRRANTHSSAASLESAVWPQRLKRMVFESDMTVNTASWPASLQQLSFGCGFNQAIVGVA 176
BLAST of mRNA_C-linearis_contig78.15347.1 vs. uniprot
Match: A0A6H5KLV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLV1_9PHAE) HSP 1 Score: 117 bits (292), Expect = 7.980e-25 Identity = 66/160 (41.25%), Postives = 94/160 (58.75%), Query Frame = 3
Query: 504 GTSQYVDALTIALKEACRGGEKRWYTSTLELQLASLELCRACRRVPTLVVCVDDQTPRTLWYRHETDNKAGSDMRSLKVHITSRVHVVRALGVEWELSRKVLMRSAAMETWEGSLERIWFGHDFNERITGVVWPVVSLQKLSLGVCFNQPVARVAWPASL 983
G S+ + A +AL + C G EKRWY STLELQL SLE C ACRRVPTL V VD QTPR+LW + A + RS + +++RV V+A G+ W L +VL++++A+E S R G+ + + W + L++L + P + +WPASL
Sbjct: 13 GRSECLRAFIVALNQTCNGQEKRWYASTLELQLVSLEFCGACRRVPTLHVRVDRQTPRSLW--SPCKSHATTKKRSREACVSNRVPAVQASGLTWALDMEVLLQTSAVELRSRSKYRRVSGNSSTASLGSMFWLQMMLKRLVFDS--DMPASTASWPASL 168
BLAST of mRNA_C-linearis_contig78.15347.1 vs. uniprot
Match: A0A6H5KXX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXX4_9PHAE) HSP 1 Score: 107 bits (267), Expect = 5.310e-21 Identity = 71/183 (38.80%), Postives = 96/183 (52.46%), Query Frame = 3
Query: 492 MSSEGTSQYVDALTIALKEACRGGEKRWYTSTLELQLASLELCRACRRVPTLVVCVDDQTPRTLWYRHETDNKA---GSDMRSL-----------------------KVHITSRVHVVRALGVEWELSRKVLMRSAAMETWEGSLERIWFGHDFNER-ITGVVWPVVSLQKLSLGVCFNQPVA 959
M SEG S+ DAL IA+ +A G KRWYTSTLEL+LASLE CRACRRVPT+ V VD TP +LW H +A S R+ K I+SRV V +ALG+ W L ++L++ A+E W LE + + + V WP +L++L+L F ++
Sbjct: 1 MDSEGASRGFDALIIAISQAYEGRGKRWYTSTLELRLASLETCRACRRVPTIHVRVDANTPPSLWSPHAMPTRAHTRSSKTRAXXXXXXXXXXXXXXXXXXXXXXXXKARISSRVPVGQALGLTWALPTEILLQGVAVELWT-KLEFLQLRESLSPSDLVSVAWPQ-NLKRLALETGFEAAIS 181
BLAST of mRNA_C-linearis_contig78.15347.1 vs. uniprot
Match: D7FTK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK8_ECTSI) HSP 1 Score: 101 bits (252), Expect = 1.090e-20 Identity = 62/142 (43.66%), Postives = 78/142 (54.93%), Query Frame = 3
Query: 501 EGTSQYVDALTIALKEACRGGEKRWYTSTLELQLASLELCRACRRVPTLVVCVDDQTPRTLWYRHETDNKAGSDMRSLKVHITSRVHVVRALGVEWELSRKVLMRSAAMETWEGSLERIWFGHDFNERITGVVWPVVSLQKL 926
EG +D L +AL +AC G EKRWY STLELQL SLELC ACR L V V + TP TLW ++ RS +V ++RV V+AL W L L + AA E + R+ GH F + VVWP SL++L
Sbjct: 84 EGGGSSLDTLIVALNQACDGQEKRWYVSTLELQLVSLELCGACRSAQLLHVFVREDTPPTLW--SSRTSRTTPSQRSPEVCTSNRVPAVQALCWTWALPMDRLPQRAAAEPQPVTERRLQDGHSFAASVESVVWPE-SLKRL 222
BLAST of mRNA_C-linearis_contig78.15347.1 vs. uniprot
Match: A0A6H5L1V9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1V9_9PHAE) HSP 1 Score: 105 bits (261), Expect = 1.550e-20 Identity = 66/166 (39.76%), Postives = 92/166 (55.42%), Query Frame = 3
Query: 492 MSSEGTSQYVDALTIALKEACRGGEKRWYTSTLELQLASLELCRACRRVPTLVVCVDDQTPRTLWYRHETDNKAGSDMRSLKVHITSRVHVVRALGVEWELSRKVLMRSAAMETWEGSLERIWFGHDF-NERITGVVWPVVSLQKLSLG-VCFNQPVARVAWPASL 983
M+SE + +DA +AL + GGEKRWYTSTL+LQLASLE C ACR P L V VD +TP TLW + + AG+ ++RV V+A+G+ W + + SA+ E W LE + + VVWP LQ+L + F P+ ++WP+SL
Sbjct: 1 MTSEAQRRCLDAFVVALSQCYEGGEKRWYTSTLQLQLASLEFCGACRSTPMLHVYVDAETPPTLWSLGQANPTAGT---------STRVPAVQAVGLTWARPTESPLGSASSELWT-RLESLQLQVSLCTANLDSVVWPQ-GLQRLVMDCTVFIIPLEMMSWPSSL 155
BLAST of mRNA_C-linearis_contig78.15347.1 vs. uniprot
Match: A0A6H5JL88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL88_9PHAE) HSP 1 Score: 98.6 bits (244), Expect = 1.570e-18 Identity = 57/155 (36.77%), Postives = 82/155 (52.90%), Query Frame = 3
Query: 570 RWYTSTLELQLASLELCRACRRVPTLVVCVDDQTPRTLWYRHETDNKA---GSDMRSLKVHITSRVHVVRALGVEWELSRKVLMRSAAMETWEG----------------------SLERIWFGHDFNERITGVVWPVVSLQKLSLGVCFNQPVA 959
RW+TSTL +QLASLE CRA R +PT+ + VD + PR+LW ++ + G ++R K SRV ++RA + W LS + L++S A+E W G LE++ D + + V WP LQKLS G FN+P+A
Sbjct: 4 RWFTSTLNIQLASLEFCRASRSIPTIALHVDSRIPRSLWDGRKSQTPSSTRGLEIRCWKARPLSRVPLIRASRLNWGLSMETLLQSTAVELWTGLKSLHLCGDVSDASPASMVQPQRLEQLEGNKDARDSVEAVPWPAF-LQKLSFGFPFNRPIA 157
BLAST of mRNA_C-linearis_contig78.15347.1 vs. uniprot
Match: A0A6H5K8K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K9_9PHAE) HSP 1 Score: 93.6 bits (231), Expect = 1.960e-16 Identity = 65/174 (37.36%), Postives = 86/174 (49.43%), Query Frame = 3
Query: 504 GTSQYVDALTIALKEACRGGEKRWYTSTLELQLASLELCRACRRVPTLVVCVDDQTPRTLWYRHETDNKAGSDMRSLKVHITSRVHVVRALGVEWELSRKVLMRSAAMET----------------------WEGSLERIWFGHDFNER-ITGVVWPVVSLQKLSLGVCFNQPV 956
G S+ +DA +ALK+A G KRWY STLELQL SLE C ACR + V + QTP +LW ++ RS + I SRV V+A G W L ++L+ +A E W L R+ F ++ER + V WP LQ+LS G FNQP+
Sbjct: 25 GRSECLDAFIVALKQAGDGRAKRWYVSTLELQLVSLEFCGACRSALSFDVQIHRQTPHSLWSPRKSHGTLKK--RSREACIPSRVPAVQANGWMWALPMEILLPRSATELHQVSENRQPTGPSSATSPGRMGWFQKLTRLMF---YSERSVNSVSWPA-CLQELSFGDFFNQPI 192
BLAST of mRNA_C-linearis_contig78.15347.1 vs. uniprot
Match: D7FT95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT95_ECTSI) HSP 1 Score: 88.2 bits (217), Expect = 1.070e-15 Identity = 65/161 (40.37%), Postives = 88/161 (54.66%), Query Frame = 3
Query: 504 GTSQYVDALTIALKEACRGGEKRWYTSTLELQLASLELCRACRRVPTLVVCVDDQTPRTLWYRHETDNKAGSDMRSLKVHITSRVHVVRALGVEWELSRKVLMRSAAMETWEGSLERIWFGHDFNERIT-GVVWPVVSLQKLSLGVCFNQPVARVAWPASL 983
G S+ +DAL IAL +A GGE WYTST++LQLASLELC +CR + L + V TP LW T + RS+K +RV VVRA V W+L L R+ + W + G F++ + G+ WP L L LG FN+ V ++ PAS+
Sbjct: 8 GPSRCLDALIIALNQAS-GGE--WYTSTMQLQLASLELCASCRSMHLLKLNVQHGTPTRLWRGTATTRET----RSVKRRNVTRVPVVRARTVTWKLPGLAL-RNMTGDAWS-EVTTFSLGPGFDDDLPRGIQWPE-KLTLLGLGPGFNRSVEHLSLPASV 158 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig78.15347.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig78.15347.1 >prot_C-linearis_contig78.15347.1 ID=prot_C-linearis_contig78.15347.1|Name=mRNA_C-linearis_contig78.15347.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=247bp MSSEGTSQYVDALTIALKEACRGGEKRWYTSTLELQLASLELCRACRRVPback to top mRNA from alignment at C-linearis_contig78:215525..217564- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig78.15347.1 ID=mRNA_C-linearis_contig78.15347.1|Name=mRNA_C-linearis_contig78.15347.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2040bp|location=Sequence derived from alignment at C-linearis_contig78:215525..217564- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig78:215525..217564- >mRNA_C-linearis_contig78.15347.1 ID=mRNA_C-linearis_contig78.15347.1|Name=mRNA_C-linearis_contig78.15347.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1482bp|location=Sequence derived from alignment at C-linearis_contig78:215525..217564- (Chordaria linearis ClinC8C monoicous)back to top |