mRNA_C-linearis_contig77.15329.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig77.15329.1
Unique NamemRNA_C-linearis_contig77.15329.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig77.15329.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig77contigC-linearis_contig77:676269..679318 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-21
Ec32 orthologEc-11_002570.1
Exons3
Model size1531
Cds size261
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig77.15329.1prot_C-linearis_contig77.15329.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig77 676772..677032 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930475.301975-UTR-C-linearis_contig77:676268..6767711622930475.301975-UTR-C-linearis_contig77:676268..676771Chordaria linearis ClinC8C monoicousUTRC-linearis_contig77 676269..676771 +
1690881088.8804214-UTR-C-linearis_contig77:676268..6767711690881088.8804214-UTR-C-linearis_contig77:676268..676771Chordaria linearis ClinC8C monoicousUTRC-linearis_contig77 676269..676771 +
1622930475.3420894-UTR-C-linearis_contig77:677032..6770721622930475.3420894-UTR-C-linearis_contig77:677032..677072Chordaria linearis ClinC8C monoicousUTRC-linearis_contig77 677033..677072 +
1690881088.909787-UTR-C-linearis_contig77:677032..6770721690881088.909787-UTR-C-linearis_contig77:677032..677072Chordaria linearis ClinC8C monoicousUTRC-linearis_contig77 677033..677072 +
1622930475.358537-UTR-C-linearis_contig77:678567..6787961622930475.358537-UTR-C-linearis_contig77:678567..678796Chordaria linearis ClinC8C monoicousUTRC-linearis_contig77 678568..678796 +
1690881088.9196763-UTR-C-linearis_contig77:678567..6787961690881088.9196763-UTR-C-linearis_contig77:678567..678796Chordaria linearis ClinC8C monoicousUTRC-linearis_contig77 678568..678796 +
1622930475.3706632-UTR-C-linearis_contig77:678820..6793181622930475.3706632-UTR-C-linearis_contig77:678820..679318Chordaria linearis ClinC8C monoicousUTRC-linearis_contig77 678821..679318 +
1690881088.9290488-UTR-C-linearis_contig77:678820..6793181690881088.9290488-UTR-C-linearis_contig77:678820..679318Chordaria linearis ClinC8C monoicousUTRC-linearis_contig77 678821..679318 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930475.3214824-CDS-C-linearis_contig77:676771..6770321622930475.3214824-CDS-C-linearis_contig77:676771..677032Chordaria linearis ClinC8C monoicousCDSC-linearis_contig77 676772..677032 +
1690881088.8978457-CDS-C-linearis_contig77:676771..6770321690881088.8978457-CDS-C-linearis_contig77:676771..677032Chordaria linearis ClinC8C monoicousCDSC-linearis_contig77 676772..677032 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig77.15329.1

>prot_C-linearis_contig77.15329.1 ID=prot_C-linearis_contig77.15329.1|Name=mRNA_C-linearis_contig77.15329.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=87bp
MPSCRLYGSPKPLVHVISPTRRSPPLPYPVFEERRRRRISSTLTPAAGGR
WLRAPLELAASQGDSPLALRLVEAGATCGTAVYAAI*
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mRNA from alignment at C-linearis_contig77:676269..679318+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig77.15329.1 ID=mRNA_C-linearis_contig77.15329.1|Name=mRNA_C-linearis_contig77.15329.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3050bp|location=Sequence derived from alignment at C-linearis_contig77:676269..679318+ (Chordaria linearis ClinC8C monoicous)
GAAGAACTAGTGCTGTACAGTAGATGCATGTTGAAGGGAAGGGAACGGAG
ATCTTTGGTATTCTGGACTCATCCGCACGCGCGCCGGCCGCTCTCCGCGT
GATCCAACACAACGGGTATTTAGTGACCCATGTGTTGCTTCTGATTTTTA
AGTCCAATCAGCTACACGCCAAAAAACGGAGCTAAATCATCCGCCACTGC
TGTGTTACAGGGTACTGTCCTGCACATTGAAAAGGGCCCGACGCGGGCTG
CAGACCACCAAGTTAAGCGTGCGTGGTCGCACATGCTGCTGCTCCTATTC
TACTTCCTGTTGTAGTCTCCATCTTTTGTACACTCCCAACAGGGTCCTCC
GCCTTGCTACATGCAGCGGTAGGTTACTAGTCTACTGCTGTGCGTCGCCT
CTGTGTGTGCCTGCTCTCTCCTGCTCCCAATCATCGTTTTTTTCCGGTAC
CGCGTGCCTTCCGAATATCCAACATAGAAAGCACACGATCTACCCACGTA
CAAATGCCATCGTGCAGACTCTACGGTTCCCCAAAACCTCTTGTACATGT
CATATCCCCGACTCGCCGCTCGCCGCCCCTTCCTTACCCTGTGTTCGAGG
AGCGGAGGCGGAGGAGAATATCTTCAACCTTGACACCCGCCGCGGGGGGA
CGCTGGCTTCGGGCTCCTCTCGAGCTGGCGGCTTCGCAGGGAGACAGCCC
CCTAGCCCTCCGGCTGGTCGAGGCTGGCGCAACGTGCGGGACGGCAGTCT
ACGCGGCCATTTGAGGCGGACATGCCGGGCTTGCGATCGATCTTCCAAAA
AAAGGTGTGCGCCCACGGCCGCAACTGACGGGGAGGGGGAGACCTCTCCA
CACGTTGCTGCTAGCCACACAACAAGCCTGCAGTAGTCCGGTCGTTGCTG
ATGCCCGACAGAAGCGATGGTCAAGCAGCAATAGAAGATGGGTGATTTGA
ATCACGAGAGGTTGTCTCCCATCTTCATCACCGCGAGCAAGGGCTACGTC
GAAGTGCTGAGGCTGATGATCGAGCATGGCGGCGAACACACTGACACCCC
AAACGCCGACGGCCGGACAGCCTTGCACGGCGCCGCCCGAGAGGGCAAGC
TCGAGGCGATTGACGCGCTGGTTCAGGCTGGAGCTGATATCGAGACCGTG
CCCCGTCACATCTATATCGGTACCTCTCGAAGATGCCGCAGGAAGCGCCA
ACCCCGCGAGCATCACCGCGCTGCTGAAGCACGGCGCGGCAGCAGAAGGC
TGGACCGGTGAACGGAACAGCCCTCTTTTGCGCGTTGTCCAAACCGGGAA
GCCCACCATGGAAGCCTTACTGCCGCTCATCCACCGAGGTGCAGACGTCA
ATGCCCCCGACGTTGATGATGACACGGCGCTCCACCAGCTATGCTACCGA
ACGTGGTGGAGATCGTGGAGCTTCTACTTAGGCTGGGGGCAGACGAGACA
CGTCTCAGCTACGACGTTACCCCTCTCGATCGGCTCCTGAAATTCAATTC
TACAGAAGCCGAGAGCGTGAAGCGCGTGCACCGGTTGCTGGAGAACGTTC
CGACCGACCATGCCTGGCGCCGCCGGGACTTCATGGTGCTGTGCCGGGTT
TTTCCCGACAGAGGGCGTCTGAACCTGCCACCGAGGACGGGTGGTGGTGT
CGACCCAGGAACGCACAGCGCAGTCGCCGCCACAATAGCGCCTAAAACTA
TCTCCCGCAGGCGCCGTTGGCTTGATGTCCCAGTGGCAAGCGGTGGTGGT
CGTAGCAGCAGCAGCAGCGGCAGCTGCAGCGAACTGGCGGAAGGTGGCAG
CGGCAGCGAATTCGGTGAAGGCGGAGGCTGGAACAGCGTGGTGGCGGCCT
GGGTGATGCGGACGGGCGAAGAGGCTATCTTTCGGAATATCGTGCTGTTC
CTGTGACTATTCGGAGACCCCCTCTAGTCTGGGATACCGCCACCCTCTTC
GTTCGGCCATTACACACTCAAACACAAACATCGGCAAAACATCGGCAAAA
AATCGCGAAACATCGTCTCGATTTTCCGATTCCGATGTCGATTCAAATCG
GTCGGATTAAATCAATGAATCGGATCCAATTCATACCCCTGTAAATTACG
GAATGCTTGTCGCATGCTTGGCCTGCCCCAGCAGCTCTGGTGACATGTGT
CTGACTTGTATTTTTCTGTGCGGCCTTTTTAAACGGCGTATTGGCATACA
GTTCCGGCGATCGGTCAGATGCACGCTCTGACCTCAGTTTGTTTGTTGTT
TTGTTCCCGTCTAACTGCTGACGTTCCGAATTCATTGGCTGATCCAAAGA
CAGCGATTGAGGCCATGCCGCAGCAGAGCTGGGCAACTCCGGTGGTCGAG
GACAGGTTGGCTGATCGGAATCCAGCCAAAGAGGTGCACCGGGTGTACAT
ATGTACGTACAAAACGACGGCCGTCAGCTTCGATCTGTTTCGAGGGGCAA
TCTCTCGGCCGATGAATTTTTCGGTGCAGCGGGTAGACACCGGTGCCTTT
TGGTACACGCCGTTTTAGTTGCCTTTTTGTTTTGCCGGCGCTCTCTTCGA
AGATATGCGCGATAAGGCAGTGGCAGACGGCGAGATGTTTTTGACGCTCT
GTTACTTACTTGTTGTGAGATGTCAAAAATTGCTTGGAGTTCCTTCGAGA
AACATGCACCTTCCCCGGACCGCCGGGGATATCTTGTGCTGTAGTTGGAG
TACTCGAACAACAAAGGTTGGATAAATCCCGAGAGTAAGGCGTATCAAGC
GCTGGGAGGACTCTCTGAAAAAATGGGTTCAAGAGTGGAAGTGCGATTTG
TTTACCACTCTTAGAGCCACCGTCGTCGATGGGTGAGACGTTGGTCATCG
GGGACAGGTGCGAGCATCATGAACCTCCCTCTACACCAAATGGATCGTTA
TTGAGGCATTACAATAGTGATATGTTATAGAGGGTTCAGAGAGGGGTGAT
GAGGCTCGGACCTGTTCCCAGCATTGTCGAATACCTTTTTTGTGGAGGGG
CGGTGCGAGAGAGTGTTTCAGACTCACTCACCGACTGTCCATTGGCAGGC
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Coding sequence (CDS) from alignment at C-linearis_contig77:676269..679318+

>mRNA_C-linearis_contig77.15329.1 ID=mRNA_C-linearis_contig77.15329.1|Name=mRNA_C-linearis_contig77.15329.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=522bp|location=Sequence derived from alignment at C-linearis_contig77:676269..679318+ (Chordaria linearis ClinC8C monoicous)
ATGCCATCGTGCAGACTCTACGGTTCCCCAAAACCTCTTGTACATGTCAT
ATCCCCGACTCGCCGCTCGCCGCCCCTTCCTTACCCTGTGTTCGAGGAGC
GGAGGCGGAGGAGAATATCTTCAACCTTGACACCCGCCGCGGGGGGACGC
TGGCTTCGGGCTCCTCTCGAGCTGGCGGCTTCGCAGGGAGACAGCCCCCT
AGCCCTCCGGCTGGTCGAGGCTGGCGCAACGTGCGGGACGGCAGTCTACG
CGGCCATTTGAATGCCATCGTGCAGACTCTACGGTTCCCCAAAACCTCTT
GTACATGTCATATCCCCGACTCGCCGCTCGCCGCCCCTTCCTTACCCTGT
GTTCGAGGAGCGGAGGCGGAGGAGAATATCTTCAACCTTGACACCCGCCG
CGGGGGGACGCTGGCTTCGGGCTCCTCTCGAGCTGGCGGCTTCGCAGGGA
GACAGCCCCCTAGCCCTCCGGCTGGTCGAGGCTGGCGCAACGTGCGGGAC
GGCAGTCTACGCGGCCATTTGA
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