mRNA_C-linearis_contig76.15250.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig76.15250.1 vs. uniprot
Match: D7FQQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQQ0_ECTSI) HSP 1 Score: 507 bits (1305), Expect = 2.890e-175 Identity = 243/334 (72.75%), Postives = 272/334 (81.44%), Query Frame = 1
Query: 1 QEHFEQFPQENGSIFLFNAYTGEAIYDVDRWGSPLPDARKLSHWFEPTAIVPPQPNEDSSPGRVDISNLRDLRDKLPGNKFRARWHCAEMIQRNVRAALSRWRVARGLWGAWIKEYDHEAERYSFTHKSTGEQQYHKPWGMDTVDLWALPGDKADENLVSLFLRVEGATAEEGADEEPRDWEASRRYRRRLYKFYREKNFSKGPHCRIVGPGSLKESCFTNVFLYPKKYYKTKPFSHPRDRQFEGARMGTYVACMDGLVEKR-------------------------ITADAYFHVRNASEHGALSMLKRMLKYRDDLHVQGIGLQRMAGSLLE 927
Q++F++FPQENGSIFLFN YTGEAIYDVDRWGSPLP AR LSHWF PTA+VPP + VD NLRDLRD PG+++RARWHCAE+IQRNVRAALSRWRVAR L W+K+YDHEAER+SFTH++ E QYHKPWGM TVDLWA+PG+K DE+LVSLFLRVE ATAEE DEEPRDWEAS+R+RRRLYKFY+EK FS+GPHCRIVGPGSLKES FTNVFLYPKKYYKTKPFSHPRDRQ EGARMG+ V CMDGLVEKR I+ADAYFHVRNASEHGAL+++K M K+RDDL VQG+GLQRMAGSLLE
Sbjct: 11 QDYFDRFPQENGSIFLFNTYTGEAIYDVDRWGSPLPGARTLSHWFVPTAVVPPATEGEP----VDTHNLRDLRDDFPGSEYRARWHCAELIQRNVRAALSRWRVARALCAVWVKDYDHEAERFSFTHQNNREMQYHKPWGMGTVDLWAVPGEKVDEHLVSLFLRVESATAEERTDEEPRDWEASKRHRRRLYKFYQEKKFSEGPHCRIVGPGSLKESSFTNVFLYPKKYYKTKPFSHPRDRQCEGARMGSQVTCMDGLVEKRTTSTENRNRKDASHGQAPYGEKGQLISADAYFHVRNASEHGALNVIKLMFKHRDDLRVQGVGLQRMAGSLLE 340 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig76.15250.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig76.15250.1 >prot_C-linearis_contig76.15250.1 ID=prot_C-linearis_contig76.15250.1|Name=mRNA_C-linearis_contig76.15250.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=548bp QEHFEQFPQENGSIFLFNAYTGEAIYDVDRWGSPLPDARKLSHWFEPTAIback to top mRNA from alignment at C-linearis_contig76:956075..961678+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig76.15250.1 ID=mRNA_C-linearis_contig76.15250.1|Name=mRNA_C-linearis_contig76.15250.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5604bp|location=Sequence derived from alignment at C-linearis_contig76:956075..961678+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig76:956075..961678+ >mRNA_C-linearis_contig76.15250.1 ID=mRNA_C-linearis_contig76.15250.1|Name=mRNA_C-linearis_contig76.15250.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3288bp|location=Sequence derived from alignment at C-linearis_contig76:956075..961678+ (Chordaria linearis ClinC8C monoicous)back to top |