mRNA_C-linearis_contig76.15242.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig76.15242.1
Unique NamemRNA_C-linearis_contig76.15242.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig76.15242.1 vs. uniprot
Match: D7FQQ8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQQ8_ECTSI)

HSP 1 Score: 354 bits (909), Expect = 4.040e-116
Identity = 186/271 (68.63%), Postives = 214/271 (78.97%), Query Frame = 2 
Query:  281 ARHHPSALRNRDFISAELVKWVGQGQEHGEGEGAGQMLEIASGTGCHAEAFSKVLPA-WTFQPTEYDETRIPDISATIEEGQYRNIRPPLVLDACSDPSKWPRPAGGDGAGDGGATRLWDAVICSNMIHISPKECTGGLLKGASAGLKAGGHLFIYGPFALNGLLIPDSNKSFDESLKARSGGSWGIRDVALVASLADEQGLELKAMTLMPANNFFVVFTKVGPTPAPRTDATNPAGNEAAREAREARVVDRVSAVVMPAREALEASLAAE 1090
            +RHHPSALRNR FI+AEL KW+G     G  + A  +LE+ASGTGCH EAF+  LPA WT+QPTEYD+TRIPDI ATIEEG++ NIRPP+VLD CSDPS WPRPAGG+ A +G + R WDA++CSNMIHISP+ECTGGLL GA+AGLK GGHLFIYGPFALNGLLIPDSNK+FD SLKARSGGSWGIRD A V  LA +QGLEL AMTLMPANNFFVVF KV      R  A   A +    E R+ARV + V+AVVMPAREAL   ++A+
Sbjct:   10 SRHHPSALRNRGFIAAELGKWLG-----GSTQDAPHLLEVASGTGCHVEAFAGHLPAFWTYQPTEYDQTRIPDILATIEEGKHSNIRPPVVLDVCSDPSTWPRPAGGETA-EGASRRQWDAIVCSNMIHISPQECTGGLLGGAAAGLKVGGHLFIYGPFALNGLLIPDSNKNFDTSLKARSGGSWGIRDAAWVCGLAHDQGLELTAMTLMPANNFFVVFKKV------REVAAAAAADV---EDRKARVAELVAAVVMPAREALVTKVSAK 265
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BLAST of mRNA_C-linearis_contig76.15242.1 vs. uniprot
Match: U585_DROME (UPF0585 protein CG18661 n=16 Tax=melanogaster group TaxID=32346 RepID=U585_DROME)

HSP 1 Score: 163 bits (412), Expect = 4.460e-43
Identity = 93/220 (42.27%), Postives = 126/220 (57.27%), Query Frame = 2 
Query:  284 RHHPSALRNRDFISAELVKWVGQGQEHGEGEGAGQMLEIASGTGCHAEAFSKVLPAWTFQPTEYDETRIPDISATIEEGQYRNIRPPLVLDACSDPSKWPRPAGGDGAGDGGATRLWDAVICSNMIHISPKECTGGLLKGASAGLKAGGHLFIYGPFALNGLLIPDSNKSFDESLKARSGGSWGIRDVALVASLADEQGLELKAMTLMPANNFFVVFTKV 943
            R HPSA RN   IS  L+  V +  E+       Q+LEIASG+G HA   + +LP  TFQPTEY+  +   I+A   +   RNIRPP  +D   DP  W  P          A   +D +  SNM+HISP  C+ GL + A   LK GG +F YGP+A +G+L+P SN  FD SL+ R   SWG+RD+  +  LA E GL+L+ +  MP+NN F+ + K+
Sbjct:   19 RSHPSADRNSQPISEALLSQVDKTTENL------QLLEIASGSGQHAGFLAPLLPNITFQPTEYERNQFGSIAAYAGDCPTRNIRPPFHVDITRDPGDWEAPP---------APASYDYMFNSNMMHISPWSCSIGLFRAAGQLLKKGGRMFTYGPYAQDGILVPQSNVDFDRSLRQRDA-SWGVRDIKDLKVLAAENGLQLEKLVKMPSNNKFLTWLKL 222
[Close]
BLAST of mRNA_C-linearis_contig76.15242.1 vs. uniprot
Match: A0A6P4EFS1_DRORH (UPF0585 protein CG18661 isoform X2 n=1 Tax=Drosophila rhopaloa TaxID=1041015 RepID=A0A6P4EFS1_DRORH)

HSP 1 Score: 159 bits (402), Expect = 8.190e-42
Identity = 92/220 (41.82%), Postives = 125/220 (56.82%), Query Frame = 2 
Query:  284 RHHPSALRNRDFISAELVKWVGQGQEHGEGEGAGQMLEIASGTGCHAEAFSKVLPAWTFQPTEYDETRIPDISATIEEGQYRNIRPPLVLDACSDPSKWPRPAGGDGAGDGGATRLWDAVICSNMIHISPKECTGGLLKGASAGLKAGGHLFIYGPFALNGLLIPDSNKSFDESLKARSGGSWGIRDVALVASLADEQGLELKAMTLMPANNFFVVFTKV 943
            R HPSA RN   IS  L+  + +  ++       Q+LEIASG+G HA   + +LP  TF PTEY+  +   ISA  EE    NIR PL +D   DP  W  P          A   +D +  SNM+HISP  C+ GL + A   LK GG +F YGP+A +GLL+P SN  FD SL+ R   SWG+RD+  +  LA + GL+L+ +  MP+NN F+ + K+
Sbjct:    6 RSHPSADRNSQPISEALLSQIDRSTQNL------QLLEIASGSGQHAGFLAPLLPNITFHPTEYERGQFGSISAYAEECATGNIRAPLHVDVTRDPRDWESPP---------APASYDYMFNSNMMHISPWACSIGLFRAAGQLLKKGGRMFTYGPYAQDGLLVPQSNVDFDRSLRQRDA-SWGVRDIKDLKVLAADNGLQLEKLVEMPSNNKFLTWLKL 209
[Close]
BLAST of mRNA_C-linearis_contig76.15242.1 vs. uniprot
Match: A0A6P4JGI7_DROKI (UPF0585 protein CG18661 isoform X1 n=5 Tax=montium subgroup TaxID=32352 RepID=A0A6P4JGI7_DROKI)

HSP 1 Score: 155 bits (392), Expect = 3.390e-40
Identity = 89/220 (40.45%), Postives = 127/220 (57.73%), Query Frame = 2 
Query:  284 RHHPSALRNRDFISAELVKWVGQGQEHGEGEGAGQMLEIASGTGCHAEAFSKVLPAWTFQPTEYDETRIPDISATIEEGQYRNIRPPLVLDACSDPSKWPRPAGGDGAGDGGATRLWDAVICSNMIHISPKECTGGLLKGASAGLKAGGHLFIYGPFALNGLLIPDSNKSFDESLKARSGGSWGIRDVALVASLADEQGLELKAMTLMPANNFFVVFTKV 943
            R HPSA RN   IS  L+  V +  ++       Q+LEIASG+G HA   + +LP  TFQPTEY+  ++  I+A  ++    NIR P  +D   DP  W  P              +D +  SNM+HISP  C+ GL + A   LK GG +F YGP+A +G+L+P SN  FD SL++R   SWG+RD+  + ++A E GLEL+ +  MP+NN F+ + K+
Sbjct:   21 RTHPSADRNSQPISEALLAQVDRESKNL------QLLEIASGSGQHAGFLAPLLPNITFQPTEYERQQLDSIAAYAKDCPTGNIRAPFCVDITQDPRDWEVPP---------TPGSFDYMFNSNMMHISPWSCSLGLFRAAGQLLKKGGRMFTYGPYAQDGVLVPQSNVDFDRSLRSRDA-SWGVRDIKDLKAVALENGLELEKLVEMPSNNKFLTWLKL 224
[Close]
BLAST of mRNA_C-linearis_contig76.15242.1 vs. uniprot
Match: A0A5F8H9S4_MONDO (Uncharacterized protein n=2 Tax=Didelphinae TaxID=126287 RepID=A0A5F8H9S4_MONDO)

HSP 1 Score: 154 bits (390), Expect = 3.440e-40
Identity = 93/215 (43.26%), Postives = 125/215 (58.14%), Query Frame = 2 
Query:  296 SALRNRDFISAELVKWVGQGQEHGEGEGAGQMLEIASGTGCHAEAFSKVLPAWTFQPTEYDETRIPDISATIEEGQYRNIRPPLVLDACSDPSKWPRPAGGDGAGDGGATRLWDAVICSNMIHISPKECTGGLLKGASAGLKAGGHLFIYGPFALNGLLIPDSNKSFDESLKARSGGSWGIRDVALVASLADEQGLELKAMTLMPANNFFVVFTK 940
            +A RN+  I   L +++   Q +       Q+LE+ASG+G H   F+K  P   +QPTE D   +  ISA I++ Q +N+RPPL LDA     KW    GG  AG        D V+C NMIHISP  CT GL +GA   LK  G L  YG +A+NG + P+SN +FD SL+ R+  +WG+RDV+L+  LA   GL L+ M  MPANN  ++F K
Sbjct:    4 AADRNQGPILKVLQQYIDPAQSNF------QVLEVASGSGQHVTYFAKAFPKVVWQPTEVDRQCLNSISALIKKEQLQNVRPPLFLDASCSWEKW----GGIQAGS------VDLVLCVNMIHISPMNCTEGLFRGAGQLLKPSGLLITYGAYAINGKITPESNVNFDISLRYRNP-AWGLRDVSLLQQLAQASGLFLEKMIDMPANNKCLIFRK 201
[Close]
BLAST of mRNA_C-linearis_contig76.15242.1 vs. uniprot
Match: UPI001B2EA2BD (DUF938 domain-containing protein n=1 Tax=Sphingobium sp. TaxID=1912891 RepID=UPI001B2EA2BD)

HSP 1 Score: 154 bits (388), Expect = 1.190e-39
Identity = 92/228 (40.35%), Postives = 135/228 (59.21%), Query Frame = 2 
Query:  257 GEMAATRDARHHPSALRNRDFISAELVKWVGQGQEHGEGEGAGQMLEIASGTGCHAEAFSKVLPAWTFQPTEYDETRIPDISATIEEGQYRNIRPPLVLDACSDPSKWPRPAGGDGAGDGGATRLWDAVICSNMIHISPKECTGGLLKGASAGLKAGGHLFIYGPFALNGLLIPDSNKSFDESLKARSGGSWGIRDVALVASLADEQGLELKAMTLMPANNFFVVFTK 940
            G+ A   D RH P+ LRNRD I  E+++ V   +        G +LE+ASG+G HA  F++  PA  +QP++ D   +  I+A + +    N+ PPL++DA ++   WP     D A         DAV+C NM+HISP E T GLL+GA+  L + G L++YGP+   G+    SN +FD+SLK+R   +WG+RDVA V + A EQG  L+A+  MPANN  ++F +
Sbjct:   15 GQAANEADKRHAPATLRNRDAI-VEVLRGVMPKR--------GTILEVASGSGEHAVHFAQAFPALDWQPSDPDPAALRSIAAYVNDADLTNVAPPLMIDARAE--DWPL----DRA---------DAVLCINMVHISPWEATRGLLRGAAKLLPSDGLLYLYGPYIQQGVETAASNLAFDQSLKSRDP-AWGLRDVADVEAAAVEQGFRLEAIVPMPANNLSLIFRR 217
[Close]
BLAST of mRNA_C-linearis_contig76.15242.1 vs. uniprot
Match: UPI0007E87A8C (UPF0585 protein CG18661 isoform X1 n=2 Tax=Drosophila eugracilis TaxID=29029 RepID=UPI0007E87A8C)

HSP 1 Score: 154 bits (388), Expect = 1.190e-39
Identity = 91/223 (40.81%), Postives = 127/223 (56.95%), Query Frame = 2 
Query:  284 RHHPSALRNRDFISAELVKWVGQGQEHGEGEGAGQMLEIASGTGCHAEAFSKVLPAWTFQPTEYDETRIPDISATIEEGQYRNIRPPLVLDACSDPSKW---PRPAGGDGAGDGGATRLWDAVICSNMIHISPKECTGGLLKGASAGLKAGGHLFIYGPFALNGLLIPDSNKSFDESLKARSGGSWGIRDVALVASLADEQGLELKAMTLMPANNFFVVFTKV 943
            R HPSA RN   IS  L+  V +  E+       Q+LEI SG+G HA   + +LP  TFQP+EY+      IS  ++E   +NI+ PL+ D   +P  W   P PA             +D +  SNM+HI+P EC+ GL + A   LK GG +F YGP+A +G+L P SN +FD SL+ R   SWG+RD+  +  LA E GLEL+ +  MP+NN F+ + K+
Sbjct:   19 RTHPSADRNSQPISEALLSQVDKTTENL------QLLEIGSGSGQHAGFLAPLLPNITFQPSEYERFHFGSISVYVKECLTKNIKEPLLADISKEPKDWEVPPTPAS------------YDYMFNSNMMHITPWECSIGLFRAAGQLLKKGGKMFTYGPYAEDGVLTPQSNVNFDSSLRIRDE-SWGVRDIKDLKVLASENGLELEKIVEMPSNNKFLTWLKL 222
[Close]
BLAST of mRNA_C-linearis_contig76.15242.1 vs. uniprot
Match: B4Q7C5_DROSI (GD23581 n=1 Tax=Drosophila simulans TaxID=7240 RepID=B4Q7C5_DROSI)

HSP 1 Score: 158 bits (399), Expect = 4.570e-39
Identity = 91/220 (41.36%), Postives = 125/220 (56.82%), Query Frame = 2 
Query:  284 RHHPSALRNRDFISAELVKWVGQGQEHGEGEGAGQMLEIASGTGCHAEAFSKVLPAWTFQPTEYDETRIPDISATIEEGQYRNIRPPLVLDACSDPSKWPRPAGGDGAGDGGATRLWDAVICSNMIHISPKECTGGLLKGASAGLKAGGHLFIYGPFALNGLLIPDSNKSFDESLKARSGGSWGIRDVALVASLADEQGLELKAMTLMPANNFFVVFTKV 943
            R HPSA RN   IS  L+  V +  ++       Q+LEIASG+G HA   + +LP  +FQPTEY+  +   I+A   E    NIRPP  +D   DP  W  P          A   +D +  SNM+HISP  C+ GL + A   LK GG +F YGP+A +G+L+P SN  FD SL+ R   SWG+RD+  +  LA E GL+L+ +  MP+NN F+ + K+
Sbjct:  221 RSHPSADRNSQPISEALLSQVDKTTQNL------QLLEIASGSGQHAGFLAPLLPNISFQPTEYERNQFGSIAAYAGECPTGNIRPPFHVDITRDPGDWEAPP---------APASYDYMFNSNMMHISPWACSIGLFRAAGQLLKKGGRMFTYGPYAQDGILVPQSNVDFDRSLRQRDA-SWGVRDIKDLKVLAAENGLQLEKLVEMPSNNKFLTWLKL 424
[Close]
BLAST of mRNA_C-linearis_contig76.15242.1 vs. uniprot
Match: T0ISE8_9SPHN (Uncharacterized protein n=1 Tax=Sphingobium ummariense RL-3 TaxID=1346791 RepID=T0ISE8_9SPHN)

HSP 1 Score: 150 bits (380), Expect = 1.220e-38
Identity = 94/233 (40.34%), Postives = 129/233 (55.36%), Query Frame = 2 
Query:  251 VHGEMAATRDARHHPSALRNRDFISAELVKWVGQGQEHGEGEGAGQMLEIASGTGCHAEAFSKVLPAWTFQPTEYDETRIPDISATIEEGQYRNIRPPLVLDACSDPSKWPRPAGGDGAGDGGATRLWDAVICSNMIHISPKECTGGLLKGASAGLKAGGHLFIYGPFALNGLLIPDSNKSFDESLKARSGGSWGIRDVALVASLADEQGLELKAMTLMPANNFFVVFTKVGP 949
            V GE  A    RH P+ LRNRD I A L   +           +G +LE+ASG+G HA  F+   P+  +QP++ D   +  I+A  +E +  N+R PL LDA +    WP     D A         DA++C NM+HISP + T GLL GA A L AGG L++YGP+   G+    SN +FDESL++R    WG+R +  V + AD QGL L+ +  MPANN  ++F K  P
Sbjct:    5 VPGEADAVAGKRHAPATLRNRDAIVAVLKDAL---------PSSGLVLEVASGSGEHAVHFAAAFPSLQWQPSDPDPAALASIAAWTQEARSPNVRAPLHLDAAAP--AWPI----DRA---------DAILCINMVHISPWDATLGLLGGAGALLPAGGLLYLYGPYLREGVETAPSNLAFDESLRSRDA-RWGLRRMEDVVAAADVQGLTLQGLVEMPANNLSLLFRKTRP 212
[Close]
BLAST of mRNA_C-linearis_contig76.15242.1 vs. uniprot
Match: K8P6U9_9BRAD (Uncharacterized protein n=7 Tax=Bradyrhizobiaceae TaxID=41294 RepID=K8P6U9_9BRAD)

HSP 1 Score: 150 bits (378), Expect = 1.650e-38
Identity = 88/218 (40.37%), Postives = 125/218 (57.34%), Query Frame = 2 
Query:  290 HPSALRNRDFISAELVKWVGQGQEHGEGEGAGQMLEIASGTGCHAEAFSKVLPAWTFQPTEYDETRIPDISATIEEGQYRNIRPPLVLDACSDPSKWPRPAGGDGAGDGGATRLWDAVICSNMIHISPKECTGGLLKGASAGLKAGGHLFIYGPFALNGLLIPDSNKSFDESLKARSGGSWGIRDVALVASLADEQGLELKAMTLMPANNFFVVFTKV 943
            +P+ LRNRD I   L          G    +G +LEIASG+G H   F++  P  TFQP++ ++  +  I+A   +    NIRPP+VLDA SD   WP  A              DA++C NMIHISP + T GL++GA+  L+ G  L++YGP+    ++   SN++FD SLK+R+   WG+RD+  VA LA  +G    A+T MPANN  VVF ++
Sbjct:    8 YPATLRNRDVILDVL---------RGVLPASGLVLEIASGSGEHVVHFARAFPGLTFQPSDPEDAALQSIAAWTRDSGLPNIRPPVVLDASSD--HWPVTAA-------------DAILCINMIHISPWQATTGLIRGAAKLLRIGAPLYLYGPYRRADVVTAPSNEAFDASLKSRNP-EWGLRDLEAVAELARAEGFSEPAITEMPANNLSVVFRRM 200
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig76.15242.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQQ8_ECTSI4.040e-11668.63Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
U585_DROME4.460e-4342.27UPF0585 protein CG18661 n=16 Tax=melanogaster grou... [more]
A0A6P4EFS1_DRORH8.190e-4241.82UPF0585 protein CG18661 isoform X2 n=1 Tax=Drosoph... [more]
A0A6P4JGI7_DROKI3.390e-4040.45UPF0585 protein CG18661 isoform X1 n=5 Tax=montium... [more]
A0A5F8H9S4_MONDO3.440e-4043.26Uncharacterized protein n=2 Tax=Didelphinae TaxID=... [more]
UPI001B2EA2BD1.190e-3940.35DUF938 domain-containing protein n=1 Tax=Sphingobi... [more]
UPI0007E87A8C1.190e-3940.81UPF0585 protein CG18661 isoform X1 n=2 Tax=Drosoph... [more]
B4Q7C5_DROSI4.570e-3941.36GD23581 n=1 Tax=Drosophila simulans TaxID=7240 Rep... [more]
T0ISE8_9SPHN1.220e-3840.34Uncharacterized protein n=1 Tax=Sphingobium ummari... [more]
K8P6U9_9BRAD1.650e-3840.37Uncharacterized protein n=7 Tax=Bradyrhizobiaceae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig76contigC-linearis_contig76:902873..907863 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score357.5
Seed ortholog evalue6.9e-96
Seed eggNOG ortholog2880.D7FQQ8
Preferred nameC16orf13
Hectar predicted targeting categorychloroplast
EggNOG free text desc.Protein of unknown function (DUF938)
EggNOG OGs28PA3@1,2QVX9@2759
Ec32 ortholog descriptionProtein of unknown function DUF938
Ec32 orthologEc-01_000160.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size1741
Cds size993
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930458.5841002-UTR-C-linearis_contig76:902872..9029751622930458.5841002-UTR-C-linearis_contig76:902872..902975Chordaria linearis ClinC8C monoicousUTRC-linearis_contig76 902873..902975 +
1690881080.416858-UTR-C-linearis_contig76:902872..9029751690881080.416858-UTR-C-linearis_contig76:902872..902975Chordaria linearis ClinC8C monoicousUTRC-linearis_contig76 902873..902975 +
1622930458.6796896-UTR-C-linearis_contig76:907218..9078631622930458.6796896-UTR-C-linearis_contig76:907218..907863Chordaria linearis ClinC8C monoicousUTRC-linearis_contig76 907219..907863 +
1690881080.4875202-UTR-C-linearis_contig76:907218..9078631690881080.4875202-UTR-C-linearis_contig76:907218..907863Chordaria linearis ClinC8C monoicousUTRC-linearis_contig76 907219..907863 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930458.599336-CDS-C-linearis_contig76:902975..9032851622930458.599336-CDS-C-linearis_contig76:902975..903285Chordaria linearis ClinC8C monoicousCDSC-linearis_contig76 902976..903285 +
1690881080.426747-CDS-C-linearis_contig76:902975..9032851690881080.426747-CDS-C-linearis_contig76:902975..903285Chordaria linearis ClinC8C monoicousCDSC-linearis_contig76 902976..903285 +
1622930458.616916-CDS-C-linearis_contig76:905214..9052731622930458.616916-CDS-C-linearis_contig76:905214..905273Chordaria linearis ClinC8C monoicousCDSC-linearis_contig76 905215..905273 +
1690881080.4351022-CDS-C-linearis_contig76:905214..9052731690881080.4351022-CDS-C-linearis_contig76:905214..905273Chordaria linearis ClinC8C monoicousCDSC-linearis_contig76 905215..905273 +
1622930458.632808-CDS-C-linearis_contig76:905861..9060651622930458.632808-CDS-C-linearis_contig76:905861..906065Chordaria linearis ClinC8C monoicousCDSC-linearis_contig76 905862..906065 +
1690881080.4450126-CDS-C-linearis_contig76:905861..9060651690881080.4450126-CDS-C-linearis_contig76:905861..906065Chordaria linearis ClinC8C monoicousCDSC-linearis_contig76 905862..906065 +
1622930458.6477594-CDS-C-linearis_contig76:906380..9066441622930458.6477594-CDS-C-linearis_contig76:906380..906644Chordaria linearis ClinC8C monoicousCDSC-linearis_contig76 906381..906644 +
1690881080.4553008-CDS-C-linearis_contig76:906380..9066441690881080.4553008-CDS-C-linearis_contig76:906380..906644Chordaria linearis ClinC8C monoicousCDSC-linearis_contig76 906381..906644 +
1622930458.6615891-CDS-C-linearis_contig76:907062..9072181622930458.6615891-CDS-C-linearis_contig76:907062..907218Chordaria linearis ClinC8C monoicousCDSC-linearis_contig76 907063..907218 +
1690881080.4728394-CDS-C-linearis_contig76:907062..9072181690881080.4728394-CDS-C-linearis_contig76:907062..907218Chordaria linearis ClinC8C monoicousCDSC-linearis_contig76 907063..907218 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig76.15242.1prot_C-linearis_contig76.15242.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig76 902976..907218 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig76.15242.1

>prot_C-linearis_contig76.15242.1 ID=prot_C-linearis_contig76.15242.1|Name=mRNA_C-linearis_contig76.15242.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=331bp
MRQSFRGSIACGLYSCCWSGLGLAFVTTGPTSSTAVFGKGTRLSTSEGEV
HGEMAATRDARHHPSALRNRDFISAELVKWVGQGQEHGEGEGAGQMLEIA
SGTGCHAEAFSKVLPAWTFQPTEYDETRIPDISATIEEGQYRNIRPPLVL
DACSDPSKWPRPAGGDGAGDGGATRLWDAVICSNMIHISPKECTGGLLKG
ASAGLKAGGHLFIYGPFALNGLLIPDSNKSFDESLKARSGGSWGIRDVAL
VASLADEQGLELKAMTLMPANNFFVVFTKVGPTPAPRTDATNPAGNEAAR
EAREARVVDRVSAVVMPAREALEASLAAEY*
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mRNA from alignment at C-linearis_contig76:902873..907863+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig76.15242.1 ID=mRNA_C-linearis_contig76.15242.1|Name=mRNA_C-linearis_contig76.15242.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4991bp|location=Sequence derived from alignment at C-linearis_contig76:902873..907863+ (Chordaria linearis ClinC8C monoicous)
CGCGGGACAGTCCCTGCTTTGCTGCACATTTGCTCCACCACGCAGGCCCG
CCCACACCCACCACAAGAAATAGCAAGGCGCTGGTAGTCGGAGACTGCTG
TTGATGAGGCAAAGCTTTCGAGGTTCCATCGCGTGTGGGCTGTACTCTTG
TTGTTGGAGCGGTCTCGGTCTTGCTTTCGTGACGACAGGGCCAACCTCTT
CAACTGCTGTCTTTGGAAAAGGCACCAGGCTCTCCACCTCGGAAGGGGAA
GTTCACGGAGAAATGGCGGCCACCAGAGACGCACGGCACCATCCATCCGC
CCTGCGCAATAGAGACTTCATCTCTGCGGAGCTTGTGAAATGGGTTGGAC
AAGGACAAGAGCATGGAGAGGGTGAAGGTGCCGGTCAGATGCTTGAGATC
GCCTCAGGGACAGGTGAGGTCCTTAGTGGTGAAGACATGTAGTCTAATAG
ATAATTCATGTGTGGTGATGTCAGGCCCAAGCGGGGCGAAGAGAGTTAAG
GCAGTCGACCTAGACCGGTCGCTGAGTCGTGTATATAAAGCTTGTGAGCA
CACACACCATTCGTGCATGCACCCAGGAAACTCCACTCGGGGGCCACACA
TACGATGGTACCCCAAAACCCAATGCCAATCCCAACACATATCCCCCAAA
ATATCCCGCAATGTCCCGCCGTGTCCCCGTATATCTTTCATCCCTGTTAC
CAAGACAAGTGATGTCACGAGTATGTCTTTCATAGTCTATCGACTATACT
TGCAGTACGTTCGTGTTTCCCCGTCGCGAACACTACTCCTGCCTTCCGTT
GAAACCCAAAACTTGCTTGCGTTCGTGGCGGCCCATCGTATTGTGTAGCT
TTGTGCTGTTGGCACGGAGGTGCCAGGATGTCTGTGACCAGAAATGGCCA
AATAGCCCCGAGATCGGGGAAACCAGTTGTCCGCCGGGTGTAATAACCCG
AGGTTCTACATATAAAAAGCGTGATAGCTCGGCAGGGTGTAATAACCCAG
TACTGGCGTGATAGCCAGGTTGGCTTGATAGCCGATAGATGAACACATGC
ATAGGCGTGATGGCCTTGGCGTGATAGCCAGGTCGGCGTGATAGCCTTGG
TGTAATAGCCAGGTCGGCGTGATAGTCTTGGCATGATAGCCAGAAAAGGA
TAGATAGTCTCATTCACCCATACATCAAACACATATCATACAGAAGCAAG
CTCACCACTCACGCGCCATAACGCACACACTTTCGCATGCCTGCGTACGC
ACACCCTTGCATACGGACTCCCCACACGTGTTGCACCCTATAGGAAAAAA
ACTGTTTTTTTTTCGGACGAGAATTGCCCTATCTGCGGACGCCCCAATTT
TGCTTAGCCATAGGAAGACACGGCAATCTTCAAACACCTCCCGCTGTAGT
GCTGATCCGAATTCTTACCAGGGTGTTTACGATACTTCATCCCCCAAGAC
GCACACCCTCCAAGTATCGGGCGATTTGAGCCACGCAAAATAATAACTTT
GGAACAAAGCTCGGTCGGGGGTATGGTATCTTCACGTATGTGGGTGCGTC
ACTGCTGTTGTTGTTGGAGGTAGACATGTCATTTTTCTTCAGCTCTTTGA
CTACCCGGCTGCACGGCTGACGTTCCGAGTTGATTTTAGTCGATTTTTGG
TGCCTTTTGCAGGCCGACCACGACCGCCGTAGTGGCGATCCGACCAACGA
ATTTTTACCAGGGTGTTTTTGCTTCAATGGTTATATAGCTGCACCGTGGC
CGAGTATGAATCGATTCGGGAAGCGCGCGAAATAATAAATTCGAGTTGAA
AGTTGCCTCCCGTGAGGCAAAAAAAATAGCTGAAAGCTGTCACAAACGGT
CGAGTTTCAGTTGCAACGGCACAGCGTTTATTTAGTTTAAAACAAAACCA
CGGCATATATAAGGTTTGCGGACATAGATCATGACACTCTGGAGGTCTCC
TGCTCGTGGCGTGGCAAAAGCCAGTCTGCGTGATGAGCAGTCAGTGGCGG
TGGCAAAGGACACGACCCAAATGATGTCGGCTAAAAGAAACGGAGGGGTT
ACGGAGAATCGCGATGGTATGCCATGTTATTTGTTGTCTGGACTTTTTTT
TCCCCCTACATATAGGGTGCAACATGTGTGTCCCTAGCGTACTGAAACAG
CCGATGGAGGCACAACAATACAAAAAGAGGTAAATAGATGGTACCTCGTA
ATCCAATCCAATTCAAACACGAAACCCCAATCTACCCGCAATCTATCCTG
GAAAATTATTTCCTTGATTGTTCTGTCAATGCGCGAGTAAACACAACACA
TCGGCTTCTTGCTTCGTTCACTTGTTGCACATCCCGCACCAGGTTGCCAT
GCAGAGGCCTTCTCGAAAGTGCTGCCGGCGTGGACTTTCCAGCCCACTGA
GGCGAGTCCCGCAACATCACATCGCTCAACTGATGCCCCTCGTTCAGCTG
ACGTCTGGTTGTTTTGGAAGGCAAACGCATGGTTCCTTTGGTACCACTTT
CGAAGCGTAGTTTGTCCATTTCGAGGCTTAAACCTGCCCAGTTCTTCTGC
GCATACTCGAATCAGACAAGTCAGATGATGCGCAGCTGGACCGCACGGTG
CCGTTCGCTACCTTCCTCGGTTCTCATCTTTGGCAGTGGCGATGAACGTG
CCTTGTAGCGCCATGCGAATAGAAAAGAATATAATACTGCTATCCAAATG
GTTTTAGTTTACAAGTAGCGTGTCTGTGTTTGGGTTGCGACAAGCAACAC
CGACCCACTTCCTGTTGTCCGCACTTGTCGAAAGCACCTCCTCTTGATCC
TGGTCAATAGGCACCCTCTAGCAGACCTTACTACGAAGTGCAGCAGGTAG
CATCTACACTGGGGAAACGTTGTGAAAGTTGAAAGTTTTCCTCCTCCGCT
CCCTTGCTCCCCTGCCTCTTCTCCCTAACCCTCTCCCTTTTCCTACTTCC
GTCCCTACTTGCCTTTCCCGTCCTGTGCGGAACTTACAGTACGACGAGAC
GCGCATTCCAGACATCTCGGCGACCATTGAAGAAGGGCAATACAGAAACA
TACGCCCGCCGTTGGTGCTGGATGCGTGCTCCGACCCCAGCAAGTGGCCG
CGCCCAGCAGGGGGGGATGGGGCAGGCGACGGAGGCGCCACGAGGCTGTG
GGACGCTGTCATCTGCAGCAACATGATCCACATTTCCCCAAAGGTGCGTT
CTGCCGCTGCTGTAGGCTGTAGTCAAGAGAGGTGGGTGTGTCTGAGTCCC
CTGGAACGAAGAACAAGATCACTACTCCTTGATACATGCTGATAGGCATA
CTGCTGCCAGCAACCCTGCTTCGAGTGCATGCCCCGTATCGTGCCTGGTG
ATTACATTTAGGTCTTTTGCATTTGTGCTTACGAGTGAGATTGACCCCCT
CCAGTTTTTTTTTCGATTTCGAGCATTCGTCTCTTGCCTTACCACTCATG
CTTGCTTGTGCATCCTCTCGCTTTACTGTTTTGCTTCATTCTTGCGCCCC
CTGAAAAGGAATGCACGGGTGGTCTACTAAAGGGAGCCTCTGCAGGGCTC
AAGGCCGGCGGGCACCTCTTTATCTACGGCCCGTTCGCGCTGAACGGCCT
TCTCATCCCTGATAGCAACAAGAGCTTCGACGAATCCCTCAAAGCTCGTA
GCGGAGGGAGCTGGGGCATCAGAGACGTGGCGTTGGTTGCCAGCTTGGCA
GACGAACAGGGCTTGGAGTTGAAGGCGATGACCTTGATGCCCGCAAACAA
CTTCTTCGTCGTCTTCACAAAGGTGAGAACATGGGAATGGTTTGTGGAGC
GGAACATGTTGGCAAAGCACTTGTTCGTCGTTGCTGGCGGCGGTAGGTTT
GGCTGCTCTGAAGCTGTGGCGTGCTCCGGCAAAAATCAGCTTGCTCCGCG
AGGCTTCTGAGCGATCGGCCATAGTATCGTGTGGAGGAAGGGCGCCGATA
ACTTGATACAGTAGGTTTGCATGACATGACACACATGACATACATGACGA
TATCTTATGCGAAAGGGGTTCTTTGTTGCAAAACGAAACCGTCGGTTGCG
CCGTACAGTACCAGGAAAAACCTCTTTGACACCGTCTGTCGTTACTGATG
GTGTATGATACATACAGCGCGAAAACGCTCTACCGTCCCAATAACTCACT
AATTTAAAGCCTTATTCATGCGGGACGTGACGTCATGCAGGTGGGCCCCA
CCCCGGCGCCGAGGACAGATGCGACAAACCCCGCTGGCAACGAAGCGGCT
CGAGAGGCTCGAGAGGCTCGTGTGGTAGATCGCGTGTCGGCGGTGGTGAT
GCCTGCCAGGGAAGCGCTCGAAGCGAGCCTCGCCGCCGAGTATTAGTAGT
ATGGGCAAAGACACACACACTCTTTCCCTTTCCTCGTGAACAGTCTAGCT
ACGATTTGTGGCTGAAGATGACACACACACCCCAGACAAGATGACACACT
CAAGTTTCGTTTTGCTGGAAGACGAAGACGAAGACGAAGACGAAGACGAA
AAGGCATGTGGCGGTTGCTCGAGTTCGTGTCGTATGAGTCACGTAGGTCA
TGGTCAATAGATTGCCCTGTGCCAGGGCGCTTCCAATTTTAATGTGTTTG
TCGTCGGTTGCGAGGAGAGGTGGACTAGCCGGGCAGATCGTAAAAAGCTG
TGTGTGTGTGTGTGTGTGTATAGGTACATAGGCGCCGAAGAGAGCAACAA
GAGAGCAACAGAGGTCGATAGTAGAACACCTCAATCACTCGGGCGGGCGG
GCGCGGTGTAGGTGCGAGATCCAAACAAGAGCGCAAAGTGACGGGGTGAC
CTCAATAATAGCAGGTGATTCGCCGGGGTGCGGCGTAATGTGCGAAGATG
GTGCAGCTAGCAAGACGAGGCGAAGGTATTAAACTGCGAAGCGCAAGGGG
TGAACGTTGCTGGTCTGTTCCGAGAGCCTCGCAGCCGGTTCAAACAGGAT
TGCATCGATGTATTAATGACTCATAAAAATAAAAAGCTCTG
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Coding sequence (CDS) from alignment at C-linearis_contig76:902873..907863+

>mRNA_C-linearis_contig76.15242.1 ID=mRNA_C-linearis_contig76.15242.1|Name=mRNA_C-linearis_contig76.15242.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1986bp|location=Sequence derived from alignment at C-linearis_contig76:902873..907863+ (Chordaria linearis ClinC8C monoicous)
ATGAGGCAAAGCTTTCGAGGTTCCATCGCGTGTGGGCTGTACTCTTGTTG
TTGGAGCGGTCTCGGTCTTGCTTTCGTGACGACAGGGCCAACCTCTTCAA
CTGCTGTCTTTGGAAAAGGCACCAGGCTCTCCACCTCGGAAGGGGAAGTT
CACGGAGAAATGGCGGCCACCAGAGACGCACGGCACCATCCATCCGCCCT
GCGCAATAGAGACTTCATCTCTGCGGAGCTTGTGAAATGGGTTGGACAAG
GACAAGAGCATGGAGAGGGTGAAGGTGCCGGTCAGATGCTTGAGATCGCC
TCAGGGACAGATGAGGCAAAGCTTTCGAGGTTCCATCGCGTGTGGGCTGT
ACTCTTGTTGTTGGAGCGGTCTCGGTCTTGCTTTCGTGACGACAGGGCCA
ACCTCTTCAACTGCTGTCTTTGGAAAAGGCACCAGGCTCTCCACCTCGGA
AGGGGAAGTTCACGGAGAAATGGCGGCCACCAGAGACGCACGGCACCATC
CATCCGCCCTGCGCAATAGAGACTTCATCTCTGCGGAGCTTGTGAAATGG
GTTGGACAAGGACAAGAGCATGGAGAGGGTGAAGGTGCCGGTCAGATGCT
TGAGATCGCCTCAGGGACAGGTTGCCATGCAGAGGCCTTCTCGAAAGTGC
TGCCGGCGTGGACTTTCCAGCCCACTGAGGTTGCCATGCAGAGGCCTTCT
CGAAAGTGCTGCCGGCGTGGACTTTCCAGCCCACTGAGTACGACGAGACG
CGCATTCCAGACATCTCGGCGACCATTGAAGAAGGGCAATACAGAAACAT
ACGCCCGCCGTTGGTGCTGGATGCGTGCTCCGACCCCAGCAAGTGGCCGC
GCCCAGCAGGGGGGGATGGGGCAGGCGACGGAGGCGCCACGAGGCTGTGG
GACGCTGTCATCTGCAGCAACATGATCCACATTTCCCCAAAGTACGACGA
GACGCGCATTCCAGACATCTCGGCGACCATTGAAGAAGGGCAATACAGAA
ACATACGCCCGCCGTTGGTGCTGGATGCGTGCTCCGACCCCAGCAAGTGG
CCGCGCCCAGCAGGGGGGGATGGGGCAGGCGACGGAGGCGCCACGAGGCT
GTGGGACGCTGTCATCTGCAGCAACATGATCCACATTTCCCCAAAGGAAT
GCACGGGTGGTCTACTAAAGGGAGCCTCTGCAGGGCTCAAGGCCGGCGGG
CACCTCTTTATCTACGGCCCGTTCGCGCTGAACGGCCTTCTCATCCCTGA
TAGCAACAAGAGCTTCGACGAATCCCTCAAAGCTCGTAGCGGAGGGAGCT
GGGGCATCAGAGACGTGGCGTTGGTTGCCAGCTTGGCAGACGAACAGGGC
TTGGAGTTGAAGGCGATGACCTTGATGCCCGCAAACAACTTCTTCGTCGT
CTTCACAAAGGAATGCACGGGTGGTCTACTAAAGGGAGCCTCTGCAGGGC
TCAAGGCCGGCGGGCACCTCTTTATCTACGGCCCGTTCGCGCTGAACGGC
CTTCTCATCCCTGATAGCAACAAGAGCTTCGACGAATCCCTCAAAGCTCG
TAGCGGAGGGAGCTGGGGCATCAGAGACGTGGCGTTGGTTGCCAGCTTGG
CAGACGAACAGGGCTTGGAGTTGAAGGCGATGACCTTGATGCCCGCAAAC
AACTTCTTCGTCGTCTTCACAAAGGTGGGCCCCACCCCGGCGCCGAGGAC
AGATGCGACAAACCCCGCTGGCAACGAAGCGGCTCGAGAGGCTCGAGAGG
CTCGTGTGGTAGATCGCGTGTCGGCGGTGGTGATGCCTGCCAGGGAAGCG
CTCGAAGCGAGCCTCGCCGCCGAGTATTAGGTGGGCCCCACCCCGGCGCC
GAGGACAGATGCGACAAACCCCGCTGGCAACGAAGCGGCTCGAGAGGCTC
GAGAGGCTCGTGTGGTAGATCGCGTGTCGGCGGTGGTGATGCCTGCCAGG
GAAGCGCTCGAAGCGAGCCTCGCCGCCGAGTATTAG
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