mRNA_C-linearis_contig76.15172.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig76.15172.1 vs. uniprot
Match: D7FVV6_ECTSI (Prohibitin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVV6_ECTSI) HSP 1 Score: 504 bits (1297), Expect = 5.660e-175 Identity = 270/275 (98.18%), Postives = 274/275 (99.64%), Query Frame = 2
Query: 230 MAEKLLQNVSRLGGVVALAAATEMCLFNVDGGQRAVIFDRFQGVKEAVVGEGTHFMIPVVQKPIIIDVRARPRTINSITGTKDLQMANISLRVLSRPLESELPRIYQELGTDFDDRVLPSLGNEVLKAVVAKYNAEELLSKRESVSTRIRDELTHRAKQFHLIMDDVSITHLTFGHEFTKAIENKQVAQQEAERQVYVVALSDQERLAAIIRAEGEAEAAELISSALKESGIGLIEVRRIDTAKEIALTLATSRNITYLPTGGGNTNMLLGLNTA 1054
MAEKLLQNVSRLGGVVA+AAATEMCLFNVDGGQRAVIFDRFQGVKEAVVGEGTHFMIP+VQKPIIIDVRARPRTINSITGTKDLQMANISLRVLSRPLESELPRIYQELGTDFDDRVLPSLGNEVLKAVVAKYNAEELLSKRESVSTRIRDELTHRAKQFHLIMDDVSITHLTFGHEFTKAIENKQVAQQEAERQVYVVALSDQERLAAIIRAEGEAEAAELIS+ALKESGIGLIEVRRIDTAKEIALTLATSRNITYLPTGGG+ NMLLGLNTA
Sbjct: 1 MAEKLLQNVSRLGGVVAIAAATEMCLFNVDGGQRAVIFDRFQGVKEAVVGEGTHFMIPIVQKPIIIDVRARPRTINSITGTKDLQMANISLRVLSRPLESELPRIYQELGTDFDDRVLPSLGNEVLKAVVAKYNAEELLSKRESVSTRIRDELTHRAKQFHLIMDDVSITHLTFGHEFTKAIENKQVAQQEAERQVYVVALSDQERLAAIIRAEGEAEAAELISAALKESGIGLIEVRRIDTAKEIALTLATSRNITYLPTGGGS-NMLLGLNTA 274
BLAST of mRNA_C-linearis_contig76.15172.1 vs. uniprot
Match: A0A835Z1F2_9STRA (Prohibitin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1F2_9STRA) HSP 1 Score: 374 bits (961), Expect = 4.480e-124 Identity = 199/275 (72.36%), Postives = 235/275 (85.45%), Query Frame = 2
Query: 230 MAEKLLQNVSRLGGVVALAAATEMCLFNVDGGQRAVIFDRFQGVKEAVVGEGTHFMIPVVQKPIIIDVRARPRTINSITGTKDLQMANISLRVLSRPLESELPRIYQELGTDFDDRVLPSLGNEVLKAVVAKYNAEELLSKRESVSTRIRDELTHRAKQFHLIMDDVSITHLTFGHEFTKAIENKQVAQQEAERQVYVVALSDQERLAAIIRAEGEAEAAELISSALKESGIGLIEVRRIDTAKEIALTLATSRNITYLPTGGGNTNMLLGLNTA 1054
MA++LL +R+G +VA AAA ++CL+ VDGG+RAVIFDR GVK+ VVGEGTHF+IP +Q PII+DVR R R INS+TGTKDLQ ANISLRVLSRP E++L I+++LG D+DDRVLPSLGNEVLKAVVAKYNAEELLSKRE+VS ++R+E+ RAKQF+LI+DDVSITHLTFG EFTKAIENKQVAQQEAERQVY+V S+QER AA+IRAEGEAEAA+LIS+ALK SG GLIEVRRID AKEIA TLA R +TYLP G G NMLL ++ +
Sbjct: 1 MADRLLSAATRVGVLVAGAAAVDLCLYTVDGGERAVIFDRLAGVKDDVVGEGTHFLIPGLQTPIIMDVRDRARVINSVTGTKDLQTANISLRVLSRPDEAKLALIFKQLGQDYDDRVLPSLGNEVLKAVVAKYNAEELLSKRETVSHQVREEIMARAKQFNLILDDVSITHLTFGREFTKAIENKQVAQQEAERQVYLVQKSEQERQAAVIRAEGEAEAADLISNALKSSGSGLIEVRRIDAAKEIAETLANGRGVTYLPAGQGGANMLLSVDPS 275
BLAST of mRNA_C-linearis_contig76.15172.1 vs. uniprot
Match: A0A7S0T017_9STRA (Prohibitin n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0T017_9STRA) HSP 1 Score: 342 bits (877), Expect = 2.050e-111 Identity = 181/273 (66.30%), Postives = 216/273 (79.12%), Query Frame = 2
Query: 230 MAEKLLQNVSRLGGVVALAAATEMCLFNVDGGQRAVIFDRFQGVKEAVVGEGTHFMIPVVQKPIIIDVRARPRTINSITGTKDLQMANISLRVLSRPLESELPRIYQELGTDFDDRVLPSLGNEVLKAVVAKYNAEELLSKRESVSTRIRDELTHRAKQFHLIMDDVSITHLTFGHEFTKAIENKQVAQQEAERQVYVVALSDQERLAAIIRAEGEAEAAELISSALKESGIGLIEVRRIDTAKEIALTLATSRNITYLPTGGGNTNMLLGLN 1048
MAE+L LG V + + C+++VD G RAVIFD+ +G+++ VVGEGTHF IP++Q PII+D+R+RPR INS TGTKDLQM NISLRVLSRP ES+LP IY+ LG DFDDR+LPSLGNEVLKAVVA+YNAEELLSKR VS +IR EL RA +F+LI+DDVSITHLTFG EF KAIE+KQVAQQEAE Q Y+VA +DQER AAII AEGEAEAA +IS A+ +G GL+EVRRID AKE+A TLA RN+ YLP G +N LL L+
Sbjct: 1 MAERLTSLTKYLGSAVFIFGIIDQCIYDVDAGTRAVIFDKVRGIQDKVVGEGTHFKIPIIQDPIIMDIRSRPRIINSSTGTKDLQMVNISLRVLSRPNESKLPLIYKTLGIDFDDRILPSLGNEVLKAVVAQYNAEELLSKRAHVSLQIRTELLERASKFNLILDDVSITHLTFGTEFAKAIEHKQVAQQEAETQAYLVAKADQERKAAIILAEGEAEAANMISKAMSAAGNGLVEVRRIDAAKEVAGTLAKGRNVIYLPNGKDGSNFLLSLD 273
BLAST of mRNA_C-linearis_contig76.15172.1 vs. uniprot
Match: A0A7S2XWM3_9STRA (Prohibitin n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWM3_9STRA) HSP 1 Score: 338 bits (868), Expect = 4.650e-110 Identity = 182/275 (66.18%), Postives = 220/275 (80.00%), Query Frame = 2
Query: 230 MAEKLLQNVSRLG-GVVALAAATEMCLFNVDGGQRAVIFDRFQGVKEAVVGEGTHFMIPVVQKPIIIDVRARPRTINSITGTKDLQMANISLRVLSRPLESELPRIYQELGTDFDDRVLPSLGNEVLKAVVAKYNAEELLSKRESVSTRIRDELTHRAKQFHLIMDDVSITHLTFGHEFTKAIENKQVAQQEAERQVYVVALSDQERLAAIIRAEGEAEAAELISSALKESGIGLIEVRRIDTAKEIALTLATSRNITYLPTG-GGNTNMLLGLN 1048
MAE++L ++++G A + CL VDGGQRAVIFD+F+G+ GEG HF+IP++Q+P I+D+RARPR INS+TGTKDLQM NISLRVLSRP E ++ I++ LGTDFD+RVLPSLGNEVLKA+VA+YNAE+LL KR+ VS +IR+ L RA F+LI+DDVSITHLTFG E+ KAIE+KQVAQQEAERQ YVVA +DQER AAIIRAEGEAEAA LIS AL SG GLIEVRRID A+E+A LA +R +TYLP G GG N+LLGLN
Sbjct: 1 MAERVLGLLTKIGLAATAGGVVVKFCLVTVDGGQRAVIFDKFKGILPDSCGEGMHFLIPIIQEPHILDIRARPRVINSVTGTKDLQMVNISLRVLSRPEEDKISHIFRTLGTDFDERVLPSLGNEVLKAIVAQYNAEDLLRKRDEVSEKIREALRKRAGAFNLILDDVSITHLTFGREYAKAIESKQVAQQEAERQQYVVAKADQERKAAIIRAEGEAEAATLISKALAGSGSGLIEVRRIDAAREVAENLAAARGVTYLPGGQGGGQNILLGLN 275
BLAST of mRNA_C-linearis_contig76.15172.1 vs. uniprot
Match: F0Y523_AURAN (Prohibitin n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y523_AURAN) HSP 1 Score: 337 bits (865), Expect = 1.460e-109 Identity = 182/275 (66.18%), Postives = 219/275 (79.64%), Query Frame = 2
Query: 236 EKLLQNVSRLG-GVVALAAATEMCLFNVDGGQRAVIFDRFQGVKEAVVGEGTHFMIPVVQKPIIIDVRARPRTINSITGTKDLQMANISLRVLSRPLESELPRIYQELGTDFDDRVLPSLGNEVLKAVVAKYNAEELLSKRESVSTRIRDELTHRAKQFHLIMDDVSITHLTFGHEFTKAIENKQVAQQEAERQVYVVALSDQERLAAIIRAEGEAEAAELISSALKESGIGLIEVRRIDTAKEIALTLATSRNITYLPTGG--GNTNMLLGLNT 1051
EK+L V+RLG GV ++ CL+NV+GG RAV+FD +GV + EGT F IPV+Q PII+D+R+RPR I S+TGTKDLQM NI LRVLSRP E LP+IY LGT+FDDRVLPSLGNEVLK+VVA+YNA++LLS RE +S +IR LT RA+ F+LI+DDVSITHL FG EFT AIE KQVAQQEAERQ YVVA ++QE+ AAIIRAEGEAEAA IS AL++ G GLIEVRRID A+E+A TL+ +R +TYLP+GG G +NMLLGLNT
Sbjct: 2 EKVLTGVARLGMGVAGVSFIGSNCLYNVEGGHRAVMFDNIRGVLPKPISEGTGFKIPVLQTPIIMDIRSRPREIKSVTGTKDLQMVNIYLRVLSRPREEALPKIYMTLGTNFDDRVLPSLGNEVLKSVVAQYNADQLLSMREQISQQIRSTLTKRAEAFNLILDDVSITHLVFGKEFTSAIEQKQVAQQEAERQTYVVAKAEQEKKAAIIRAEGEAEAAATISKALEQCGSGLIEVRRIDAAREVAETLSRARGVTYLPSGGDKGGSNMLLGLNT 276
BLAST of mRNA_C-linearis_contig76.15172.1 vs. uniprot
Match: A0A7S3M2D1_9STRA (Prohibitin n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M2D1_9STRA) HSP 1 Score: 333 bits (855), Expect = 4.340e-108 Identity = 176/257 (68.48%), Postives = 210/257 (81.71%), Query Frame = 2
Query: 275 VALAAATEMCLFNVDGGQRAVIFDRFQGVKEAVVGEGTHFMIPVVQKPIIIDVRARPRTINSITGTKDLQMANISLRVLSRPLESELPRIYQELGTDFDDRVLPSLGNEVLKAVVAKYNAEELLSKRESVSTRIRDELTHRAKQFHLIMDDVSITHLTFGHEFTKAIENKQVAQQEAERQVYVVALSDQERLAAIIRAEGEAEAAELISSALKESGIGLIEVRRIDTAKEIALTLATSRNITYLPTGGGNTNMLLGL 1045
V A E ++VD G RAVIFD+ QG+++ V GEGTHF IP +Q PII+D+R+RPR+I+S+TGTKDLQM NISLRVLSRP E +L IYQ LGTDFDDRVLPSLGNEVLK+VVA+YNAEELLSKR VS IR+ L RA +F+LI+DDVSITHLTFG EF +AIE+KQVAQQEAE Q YVVA +DQER AA+IRAEGEAEAA LIS A+ ++G GLIEVRRIDTAK++A ++ SRNITYLP+ G +NMLL +
Sbjct: 16 VVTGIAIEFFTYDVDAGNRAVIFDKIQGIQQTVKGEGTHFKIPFIQVPIIMDIRSRPRSIHSVTGTKDLQMVNISLRVLSRPKEDQLATIYQTLGTDFDDRVLPSLGNEVLKSVVAQYNAEELLSKRALVSHGIREALVERAAKFNLILDDVSITHLTFGKEFARAIEHKQVAQQEAETQAYVVAKADQERKAAVIRAEGEAEAANLISEAMLKAGNGLIEVRRIDTAKDVAQIVSRSRNITYLPSSKGGSNMLLNV 272
BLAST of mRNA_C-linearis_contig76.15172.1 vs. uniprot
Match: A0A1Z5JUT9_FISSO (Prohibitin n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JUT9_FISSO) HSP 1 Score: 333 bits (853), Expect = 9.620e-108 Identity = 176/279 (63.08%), Postives = 221/279 (79.21%), Query Frame = 2
Query: 230 MAEKLLQNVSRLGGVVALAAAT-EMCLFNVDGGQRAVIFDRFQG-VKEAVVGEGTHFMIPVVQKPIIIDVRARPRTINSITGTKDLQMANISLRVLSRPLESELPRIYQELGTDFDDRVLPSLGNEVLKAVVAKYNAEELLSKRESVSTRIRDELTHRAKQFHLIMDDVSITHLTFGHEFTKAIENKQVAQQEAERQVYVVALSDQERLAAIIRAEGEAEAAELISSALKESGIGLIEVRRIDTAKEIALTLATSRNITYLPTGGGNT---NMLLGLNT 1051
MAE L + RL GV+A+ T C++NVDGG+RAV+FD +G ++ V GEGTHFMIPVVQ+PI++DVR +PR I SITGTKDLQM NI LRVL RP+ ELP +Y+ELGTDFD+RVLPS+GNEVLK++VA+YNAEELLSKR VS RI++ +T RA+ FHL +DDV+ITHLTFG EF KAIE KQVA QEAERQ +VV ++QER+A + RAEGEAEAA +I+ A++++G ++EVRRID AKEIA LA SRNI YLP GGG + N+LL ++T
Sbjct: 1 MAEAALNRLGRLSGVLAVGTFTVSQCIYNVDGGERAVLFDTLRGGIRSDVRGEGTHFMIPVVQRPIVMDVRTKPREIPSITGTKDLQMVNIKLRVLWRPIVEELPALYRELGTDFDERVLPSIGNEVLKSIVAQYNAEELLSKRAEVSNRIKEAMTKRARHFHLTLDDVAITHLTFGREFMKAIEMKQVASQEAERQQWVVKKAEQERIAVVTRAEGEAEAASIITKAMEKTGNAIVEVRRIDAAKEIAGKLAQSRNIVYLPGGGGESGGSNLLLSVDT 279
BLAST of mRNA_C-linearis_contig76.15172.1 vs. uniprot
Match: A0A7S4EFZ4_9STRA (Prohibitin n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EFZ4_9STRA) HSP 1 Score: 332 bits (852), Expect = 1.510e-107 Identity = 178/281 (63.35%), Postives = 223/281 (79.36%), Query Frame = 2
Query: 230 MAEKLLQNVSRLGGVVALAAAT-EMCLFNVDGGQRAVIFDRFQG-VKEAVVGEGTHFMIPVVQKPIIIDVRARPRTINSITGTKDLQMANISLRVLSRPLESELPRIYQELGTDFDDRVLPSLGNEVLKAVVAKYNAEELLSKRESVSTRIRDELTHRAKQFHLIMDDVSITHLTFGHEFTKAIENKQVAQQEAERQVYVVALSDQERLAAIIRAEGEAEAAELISSALKESGIGLIEVRRIDTAKEIALTLATSRNITYLPTGGGN------TNMLLGLN 1048
MA++ L+ + RL GV ++ A T C++NVDGGQRAV+FD+ +G + V GEGTHF+IP++Q+PII D+R +PR I S+TGTKDLQM NI LRVL RP ESELP+IY+ELGTDFD+RVLPS+GNEVLK++VA+YNA ELLSKR VS RIRDE+T RAK FHL DDV+ITHLTFG EF AIE+KQVA QEAERQ +VV ++QER A + RAEGEAEAA +I+ A++++G G+IEVRRID AKEIA LA SRN+ YLP GG+ +N+LLGL+
Sbjct: 1 MAQQALKGLGRLAGVASVGAFTVNSCIYNVDGGQRAVMFDQLRGGILPDVSGEGTHFLIPMIQRPIIFDIRTKPREIPSVTGTKDLQMVNIKLRVLWRPTESELPQIYRELGTDFDERVLPSIGNEVLKSIVAQYNAVELLSKRAEVSERIRDEMTKRAKTFHLEFDDVAITHLTFGREFMTAIESKQVASQEAERQQWVVKKAEQERQAMVTRAEGEAEAATIITQAMEKTGNGIIEVRRIDAAKEIAGKLANSRNVVYLPNTGGSGGNGSGSNLLLGLD 281
BLAST of mRNA_C-linearis_contig76.15172.1 vs. uniprot
Match: B7G8K0_PHATC (Prohibitin n=4 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G8K0_PHATC) HSP 1 Score: 328 bits (841), Expect = 7.030e-106 Identity = 175/283 (61.84%), Postives = 222/283 (78.45%), Query Frame = 2
Query: 230 MAEKLLQNVSRLGGVVALAAAT-EMCLFNVDGGQRAVIFDRFQG-VKEAVVGEGTHFMIPVVQKPIIIDVRARPRTINSITGTKDLQMANISLRVLSRPLESELPRIYQELGTDFDDRVLPSLGNEVLKAVVAKYNAEELLSKRESVSTRIRDELTHRAKQFHLIMDDVSITHLTFGHEFTKAIENKQVAQQEAERQVYVVALSDQERLAAIIRAEGEAEAAELISSALKESGIGLIEVRRIDTAKEIALTLATSRNITYLP-TGGGN------TNMLLGLNT 1051
MAE +L + R GV+A+ T CLFNVDGG+RAV+FD +G + + EGTHF++P++Q+P+I+D+R + R + S+TGTKDLQM NI LRVL RP+E ELP +Y+ELGTDFD+RVLPS+GNEVLK+VVA+YNAEELLSKRE VS RI++E+ RAK FHL +DDV+ITHLTFG EF KAIE KQVA QEAERQ +VV ++QER A + RAEGEAE+A +I+ A++++G +IEVRRID AKEIA LA SRNI YLP TGGGN +NMLLG++T
Sbjct: 1 MAEAVLNRLGRASGVLAVGTFTVSQCLFNVDGGERAVMFDTLRGGILPDIRKEGTHFLVPIIQRPVIMDIRTKAREVPSVTGTKDLQMVNIKLRVLWRPIEEELPTLYRELGTDFDERVLPSIGNEVLKSVVAQYNAEELLSKREEVSERIKNEMMKRAKHFHLTLDDVAITHLTFGREFMKAIEAKQVASQEAERQQWVVKKAEQERQAVVTRAEGEAESARIITKAMEKTGNAIIEVRRIDAAKEIAGKLANSRNIVYLPNTGGGNGSSGGGSNMLLGIDT 283
BLAST of mRNA_C-linearis_contig76.15172.1 vs. uniprot
Match: A0A7S2HUT8_9STRA (Prohibitin n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HUT8_9STRA) HSP 1 Score: 326 bits (836), Expect = 4.250e-105 Identity = 182/272 (66.91%), Postives = 210/272 (77.21%), Query Frame = 2
Query: 254 VSRLGGVVALAAATEMC----LFNVDGGQRAVIFDRFQGVKEAVVGEGTHFMIPVVQKPIIIDVRARPRTINSITGTKDLQMANISLRVLSRPLESELPRIYQELGTDFDDRVLPSLGNEVLKAVVAKYNAEELLSKRESVSTRIRDELTHRAKQFHLIMDDVSITHLTFGHEFTKAIENKQVAQQEAERQVYVVALSDQERLAAIIRAEGEAEAAELISSALKESGIGLIEVRRIDTAKEIALTLATSRNITYLP-TGGGNTNMLLGLNTA 1054
++R+G V AA T L++VDGGQRAVIFDRFQGV EGTH IP +Q PII D+R+R R + SITGTKDLQM NI LR+LSRP E L IYQ+LGT+FDDRVLPS+ NEVLK +VAKY+A ELLSKR+ +ST+IR EL RA FHL +DDVSITHL +G EFT AIE KQVAQQEAERQ +VVA +DQER AAIIRAEGE+EAA +++ AL++ G GLIEVRRIDTAKEIA LA SRNITYLP TGGG MLLGLN A
Sbjct: 15 LTRIGRVSLAAAGTGFVANNVLYSVDGGQRAVIFDRFQGVLPDARSEGTHLKIPFIQDPIIFDIRSRAREVKSITGTKDLQMVNIWLRILSRPQEEHLSEIYQQLGTNFDDRVLPSIVNEVLKGIVAKYDAVELLSKRQEISTQIRLELEKRAGGFHLTLDDVSITHLVYGKEFTNAIEQKQVAQQEAERQHWVVAKADQERQAAIIRAEGESEAATIVTKALQDCGSGLIEVRRIDTAKEIAGMLAQSRNITYLPNTGGGGAQMLLGLNNA 286 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig76.15172.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig76.15172.1 >prot_C-linearis_contig76.15172.1 ID=prot_C-linearis_contig76.15172.1|Name=mRNA_C-linearis_contig76.15172.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=276bp MAEKLLQNVSRLGGVVALAAATEMCLFNVDGGQRAVIFDRFQGVKEAVVGback to top mRNA from alignment at C-linearis_contig76:286751..291100- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig76.15172.1 ID=mRNA_C-linearis_contig76.15172.1|Name=mRNA_C-linearis_contig76.15172.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4350bp|location=Sequence derived from alignment at C-linearis_contig76:286751..291100- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig76:286751..291100- >mRNA_C-linearis_contig76.15172.1 ID=mRNA_C-linearis_contig76.15172.1|Name=mRNA_C-linearis_contig76.15172.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1656bp|location=Sequence derived from alignment at C-linearis_contig76:286751..291100- (Chordaria linearis ClinC8C monoicous)back to top |