mRNA_C-linearis_contig76.15169.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig76.15169.1
Unique NamemRNA_C-linearis_contig76.15169.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig76.15169.1 vs. uniprot
Match: D7FVV8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVV8_ECTSI)

HSP 1 Score: 223 bits (567), Expect = 2.370e-69
Identity = 133/218 (61.01%), Postives = 155/218 (71.10%), Query Frame = -2 
Query:    3 SQDPTATAYLRAFQAAVASNVQAMCELPEPRELREDDELFTDILQFCEDAQAANARLAATRARVARLSADTCRDALRVSEAADDRACSVLEARTKHAKRKKEVEGPLP---------PVPPANGDSGGGADGAVDTVASFSGIDPNVMEPKISALIGKLAELPGPLKSVLQEIPELTASLAVSVQNAESVMEKRESRTEALLGKAPPTPLPSKKRRAA 629
            +QD   TAYLRAFQAAVA  V+ +CE+ + RE RE+DEL  +I QF  D +AA +RL ATRARVARLSADTCRDALRVSEAADDRAC+VLEA T HA+R+ E  GPLP                               F G++  V+EPK+SALIGK+AELPGPLKSVLQEIPELTASLAVSVQ AE+ ++  +SRTEALLGKAPPTPL SKK + A
Sbjct:   34 AQDAATTAYLRAFQAAVADKVRDLCEVQDARESREEDELVGEIFQFSHDLRAARSRLYATRARVARLSADTCRDALRVSEAADDRACAVLEASTAHARRESETGGPLPLRIDDAAXXXXXXXXXXXXXXXXXXXXXXGIFQGLETGVVEPKVSALIGKMAELPGPLKSVLQEIPELTASLAVSVQEAEAAIKAGQSRTEALLGKAPPTPLSSKKGKGA 251
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig76.15169.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVV8_ECTSI2.370e-6961.01Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig76contigC-linearis_contig76:265240..265871 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size632
Cds size630
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930439.9640555-CDS-C-linearis_contig76:265239..2658691622930439.9640555-CDS-C-linearis_contig76:265239..265869Chordaria linearis ClinC8C monoicousCDSC-linearis_contig76 265240..265869 +
1690881070.4370196-CDS-C-linearis_contig76:265239..2658691690881070.4370196-CDS-C-linearis_contig76:265239..265869Chordaria linearis ClinC8C monoicousCDSC-linearis_contig76 265240..265869 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig76.15169.1prot_C-linearis_contig76.15169.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig76 265240..265869 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig76.15169.1

>prot_C-linearis_contig76.15169.1 ID=prot_C-linearis_contig76.15169.1|Name=mRNA_C-linearis_contig76.15169.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=210bp
PAALRFLLGSGVGGALPNSASVRLSLFSITDSAFCTETASEAVSSGISCS
TDLSGPGSSASFPISALILGSMTLGSMPEKDATVSTAPSAPPPLSPFAGG
TGGRGPSTSFFLFACFVLASRTEHARSSAASDTRRASLQVSAERRATRAR
VAASLAFAAWASSQNWRMSVNSSSSSRSSRGSGSSHMACTLLATAAWNAR
RYAVAVGSCD
back to top

mRNA from alignment at C-linearis_contig76:265240..265871+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig76.15169.1 ID=mRNA_C-linearis_contig76.15169.1|Name=mRNA_C-linearis_contig76.15169.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=632bp|location=Sequence derived from alignment at C-linearis_contig76:265240..265871+ (Chordaria linearis ClinC8C monoicous)
CCCGCCGCTCTGCGCTTCTTACTAGGCAGCGGCGTTGGCGGCGCCTTGCC
CAACAGCGCTTCCGTCCGGCTCTCCCTCTTCTCCATCACCGACTCCGCGT
TCTGCACCGAAACCGCGAGCGAAGCCGTGAGCTCGGGTATTTCCTGCAGC
ACGGACTTGAGCGGGCCGGGAAGCTCCGCCAGCTTCCCGATCAGCGCGCT
GATCTTGGGCTCCATGACGTTGGGGTCGATGCCGGAGAAGGACGCCACCG
TGTCGACGGCGCCGTCGGCGCCGCCACCGCTGTCGCCGTTCGCCGGCGGA
ACCGGCGGCAGGGGACCCTCGACCTCCTTCTTTCTCTTCGCGTGCTTTGT
CCTGGCCTCGAGGACGGAGCACGCGCGGTCGTCTGCGGCCTCGGACACTC
GCAGGGCGTCTCTGCAGGTGTCCGCCGAGAGGCGAGCGACGCGTGCGCGG
GTCGCCGCCAGCCTGGCGTTCGCGGCCTGGGCGTCTTCGCAGAACTGGAG
GATGTCTGTGAATAGTTCGTCATCCTCCCGCAGCTCGCGCGGCTCAGGTA
GCTCGCACATGGCCTGCACGTTGCTGGCAACCGCGGCTTGGAACGCTCGC
AGGTACGCCGTTGCTGTCGGGTCTTGTGATGT
back to top

Coding sequence (CDS) from alignment at C-linearis_contig76:265240..265871+

>mRNA_C-linearis_contig76.15169.1 ID=mRNA_C-linearis_contig76.15169.1|Name=mRNA_C-linearis_contig76.15169.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1260bp|location=Sequence derived from alignment at C-linearis_contig76:265240..265871+ (Chordaria linearis ClinC8C monoicous)
CCCGCCGCTCTGCGCTTCTTACTAGGCAGCGGCGTTGGCGGCGCCTTGCC
CAACAGCGCTTCCGTCCGGCTCTCCCTCTTCTCCATCACCGACTCCGCGT
TCTGCACCGAAACCGCGAGCGAAGCCGTGAGCTCGGGTATTTCCTGCAGC
ACGGACTTGAGCGGGCCGGGAAGCTCCGCCAGCTTCCCGATCAGCGCGCT
GATCTTGGGCTCCATGACGTTGGGGTCGATGCCGGAGAAGGACGCCACCG
TGTCGACGGCGCCGTCGGCGCCGCCACCGCTGTCGCCGTTCGCCGGCGGA
ACCGGCGGCAGGGGACCCTCGACCTCCTTCTTTCTCTTCGCGTGCTTTGT
CCTGGCCTCGAGGACGGAGCACGCGCGGTCGTCTGCGGCCTCGGACACTC
GCAGGGCGTCTCTGCAGGTGTCCGCCGAGAGGCGAGCGACGCGTGCGCGG
GTCGCCGCCAGCCTGGCGTTCGCGGCCTGGGCGTCTTCGCAGAACTGGAG
GATGTCTGTGAATAGTTCGTCATCCTCCCGCAGCTCGCGCGGCTCAGGTA
GCTCGCACATGGCCTGCACGTTGCTGGCAACCGCGGCTTGGAACGCTCGC
AGGTACGCCGTTGCTGTCGGGTCTTGTGATCCCGCCGCTCTGCGCTTCTT
ACTAGGCAGCGGCGTTGGCGGCGCCTTGCCCAACAGCGCTTCCGTCCGGC
TCTCCCTCTTCTCCATCACCGACTCCGCGTTCTGCACCGAAACCGCGAGC
GAAGCCGTGAGCTCGGGTATTTCCTGCAGCACGGACTTGAGCGGGCCGGG
AAGCTCCGCCAGCTTCCCGATCAGCGCGCTGATCTTGGGCTCCATGACGT
TGGGGTCGATGCCGGAGAAGGACGCCACCGTGTCGACGGCGCCGTCGGCG
CCGCCACCGCTGTCGCCGTTCGCCGGCGGAACCGGCGGCAGGGGACCCTC
GACCTCCTTCTTTCTCTTCGCGTGCTTTGTCCTGGCCTCGAGGACGGAGC
ACGCGCGGTCGTCTGCGGCCTCGGACACTCGCAGGGCGTCTCTGCAGGTG
TCCGCCGAGAGGCGAGCGACGCGTGCGCGGGTCGCCGCCAGCCTGGCGTT
CGCGGCCTGGGCGTCTTCGCAGAACTGGAGGATGTCTGTGAATAGTTCGT
CATCCTCCCGCAGCTCGCGCGGCTCAGGTAGCTCGCACATGGCCTGCACG
TTGCTGGCAACCGCGGCTTGGAACGCTCGCAGGTACGCCGTTGCTGTCGG
GTCTTGTGAT
back to top