mRNA_C-linearis_contig76.15168.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig76.15168.1
Unique NamemRNA_C-linearis_contig76.15168.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig76.15168.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 245 bits (626), Expect = 1.270e-69
Identity = 122/133 (91.73%), Postives = 127/133 (95.49%), Query Frame = 1
Query: 1492 TISHIGCSNHRMESTTSSVFNGRSLGALGLERTLVGRYKKSSQMAARLSQMCGILTMEALSVMQDVETRWWSTWAMIVRLLYLRKAIKLHKSMDDVHSLLSDTDWEVLRLIEPILQPFMKAQKDLEGAQYVTG 1890
            TISHIGCSNHRMESTTSSVFNGRSLGALGL RTLVGRYKKSSQMAARL Q+CGIL ME LSVMQDVETRWWSTWAM+VRLLYL KAIKLH+SMD+VH LLSDTDWEVLRLIEPIL+PFMKAQKDLEGAQYVTG
Sbjct:  130 TISHIGCSNHRMESTTSSVFNGRSLGALGLARTLVGRYKKSSQMAARLVQLCGILQMEPLSVMQDVETRWWSTWAMVVRLLYLMKAIKLHESMDEVHPLLSDTDWEVLRLIEPILRPFMKAQKDLEGAQYVTG 262          
BLAST of mRNA_C-linearis_contig76.15168.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE)

HSP 1 Score: 202 bits (513), Expect = 1.210e-53
Identity = 98/132 (74.24%), Postives = 115/132 (87.12%), Query Frame = 1
Query: 1495 ISHIGCSNHRMESTTSSVFNGRSLGALGLERTLVGRYKKSSQMAARLSQMCGILTMEALSVMQDVETRWWSTWAMIVRLLYLRKAIKLHKSMDDVHSLLSDTDWEVLRLIEPILQPFMKAQKDLEGAQYVTG 1890
            + HIGCSNHRMESTTSSVFNG+SLGAL   R +VGRYK+SSQM+ RL+   GIL +  LSV+QDVETRWWS+WAMI RLLYL KAIKLH+S D++  +LS+TDWEVLRLIEPIL+PFM+AQKDLEGA+YVTG
Sbjct:  167 LEHIGCSNHRMESTTSSVFNGKSLGALAKARAVVGRYKRSSQMSGRLAVFIGILKLSPLSVLQDVETRWWSSWAMIERLLYLMKAIKLHESTDNIAPVLSETDWEVLRLIEPILRPFMQAQKDLEGAKYVTG 298          
BLAST of mRNA_C-linearis_contig76.15168.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 4.630e-27
Identity = 66/132 (50.00%), Postives = 90/132 (68.18%), Query Frame = 1
Query: 1495 ISHIGCSNHRMESTTSSVFNGRSLG-ALGLERTLVGRYKKSSQMAARLSQMCGILTMEALSVMQDVETRWWSTWAMIVRLLYLRKAIKLHKSMDDVHSLLSDTDWEVLRLIEPILQPFMKAQKDLEGAQYVT 1887
            ++H+GC  HR+ES TS  F G  +  AL L R +V RY  SSQ + RL Q+C I+ +E  +V+QDVETRWWST+  I RL+ LR+ I  H+ +D    LL + DWEVL+L+E +L+PFM AQK LE ++ VT
Sbjct:   95 VTHLGCFCHRLESITSQAFGGPGVSKALALARGVVTRYTISSQASDRLEQVCDIVQVERKNVVQDVETRWWSTYVSICRLISLRRPITEHEIIDSTPPLLKEKDWEVLQLVESLLKPFMTAQKHLEASKEVT 226          
BLAST of mRNA_C-linearis_contig76.15168.1 vs. uniprot
Match: A0A6H5JJV8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV8_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 1.880e-26
Identity = 64/132 (48.48%), Postives = 89/132 (67.42%), Query Frame = 1
Query: 1495 ISHIGCSNHRMESTTSSVFNGRSLG-ALGLERTLVGRYKKSSQMAARLSQMCGILTMEALSVMQDVETRWWSTWAMIVRLLYLRKAIKLHKSMDDVHSLLSDTDWEVLRLIEPILQPFMKAQKDLEGAQYVT 1887
            ++H+GC  HR+ES TS  F G  +  AL L R +V RY  SSQ + RL QM  I+ +E   V+QDVETRWWST+A I RLL LR+ I  H+ +D +  LL + DWEVL+++EP+ +PF+ +QK  E ++ VT
Sbjct:  139 VTHLGCFCHRLESITSQAFGGPGVSKALALARRVVTRYNMSSQASDRLEQMRDIVQVERKKVVQDVETRWWSTYASICRLLSLRRPITEHERIDSIPPLLKEKDWEVLQVVEPLSKPFILSQKHREASKDVT 270          
BLAST of mRNA_C-linearis_contig76.15168.1 vs. uniprot
Match: A0A6H5KVI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI1_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 2.350e-23
Identity = 62/132 (46.97%), Postives = 80/132 (60.61%), Query Frame = 1
Query: 1495 ISHIGCSNHRMESTTSSVFNGRSLG-ALGLERTLVGRYKKSSQMAARLSQMCGILTMEALSVMQDVETRWWSTWAMIVRLLYLRKAIKLHKSMDDVHSLLSDTDWEVLRLIEPILQPFMKAQKDLEGAQYVT 1887
            +SH+GC  HR ES TS  F G  +  AL L R +V RY  SSQ + RL QMC I+ +E   V+QDVETRWWST                 + +D +  LL++ DWEVL+L+EP+L PFM AQK LE ++ VT
Sbjct:   83 VSHLGCFCHRFESITSQAFGGPGVSKALALPRGVVTRYTMSSQASNRLEQMCDIVQVERKKVVQDVETRWWST----------------PREIDSIPPLLNEKDWEVLQLVEPLLHPFMTAQKHLEASKGVT 198          
BLAST of mRNA_C-linearis_contig76.15168.1 vs. uniprot
Match: A0A6H5L7Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Y8_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 2.960e-9
Identity = 34/52 (65.38%), Postives = 41/52 (78.85%), Query Frame = 3
Query: 1320 LSLDCAKHTGTTTGEDLAALVAGMVARHDLTGRVTACVTDCEPSMIKAGRLL 1475
            LS+DC+K  GTTTG+ LAA +   VA+H LTG+VTA  TDCEPSM+K GRLL
Sbjct:   73 LSVDCSKSEGTTTGDALAAGIKATVAKHGLTGKVTAVTTDCEPSMVKMGRLL 124          
BLAST of mRNA_C-linearis_contig76.15168.1 vs. uniprot
Match: A0A7R9HHX7_9NEOP (Hypothetical protein n=1 Tax=Timema monikensis TaxID=170555 RepID=A0A7R9HHX7_9NEOP)

HSP 1 Score: 69.3 bits (168), Expect = 9.810e-9
Identity = 42/103 (40.78%), Postives = 63/103 (61.17%), Query Frame = 1
Query: 1585 RTLVGRYKKSSQMAARLSQMCGILTMEALSVMQDVETRWWSTWAMIVRLLYLRKAI--KLHKSMDDVHSLLSDTDWEVLRLIEPILQPFMKAQKDLEGAQYVT 1887
            R +VG Y +SS   ARL  +   + + AL ++QDVETRW S +AM+ RL+ LRKA+  +L  S  D+ SL S T+W++   I  +++PF +A  +  G  Y T
Sbjct:  165 RAIVGHYSRSSTANARLHAVQKTMDLPALKLIQDVETRWSSEYAMLDRLVCLRKAVAAELASSNSDIDSL-SSTEWKLAGGIVEVMRPFAEASTEACGNAYPT 266          
BLAST of mRNA_C-linearis_contig76.15168.1 vs. uniprot
Match: A0A7R9E9C6_9NEOP (Hypothetical protein n=1 Tax=Timema monikensis TaxID=170555 RepID=A0A7R9E9C6_9NEOP)

HSP 1 Score: 69.3 bits (168), Expect = 1.610e-8
Identity = 42/103 (40.78%), Postives = 63/103 (61.17%), Query Frame = 1
Query: 1585 RTLVGRYKKSSQMAARLSQMCGILTMEALSVMQDVETRWWSTWAMIVRLLYLRKAI--KLHKSMDDVHSLLSDTDWEVLRLIEPILQPFMKAQKDLEGAQYVT 1887
            R +VG Y +SS   ARL  +   + + AL ++QDVETRW S +AM+ RL+ LRKA+  +L  S  D+ SL S T+W++   I  +++PF +A  +  G  Y T
Sbjct:  308 RAIVGHYSRSSTANARLHAVQKTMDLPALKLIQDVETRWSSEYAMLDRLVCLRKAVAAELASSNSDIDSL-SSTEWKLAGGIVEVMRPFAEASTEACGNAYPT 409          
BLAST of mRNA_C-linearis_contig76.15168.1 vs. uniprot
Match: A0A7R8Z5H1_TIMDO (Hypothetical protein n=1 Tax=Timema douglasi TaxID=61478 RepID=A0A7R8Z5H1_TIMDO)

HSP 1 Score: 68.9 bits (167), Expect = 1.870e-8
Identity = 42/103 (40.78%), Postives = 63/103 (61.17%), Query Frame = 1
Query: 1585 RTLVGRYKKSSQMAARLSQMCGILTMEALSVMQDVETRWWSTWAMIVRLLYLRKAI--KLHKSMDDVHSLLSDTDWEVLRLIEPILQPFMKAQKDLEGAQYVT 1887
            R +VG Y +SS   ARL  +   + + AL ++QDVETRW S +AM+ RL+ LRKA+  +L  S  D+ SL S T+W++   I  +++PF +A  +  G  Y T
Sbjct:  308 RAIVGHYSRSSTANARLHAVQKTMDLPALKLIQDVETRWSSEYAMLDRLVCLRKAVAAELASSNSDIDSL-SSTEWKLAGGIVEVMRPFAEATTEACGNAYPT 409          
BLAST of mRNA_C-linearis_contig76.15168.1 vs. uniprot
Match: A0A7R9IZA8_TIMCA ((California timema) hypothetical protein n=1 Tax=Timema californicum TaxID=61474 RepID=A0A7R9IZA8_TIMCA)

HSP 1 Score: 68.9 bits (167), Expect = 1.920e-8
Identity = 42/103 (40.78%), Postives = 63/103 (61.17%), Query Frame = 1
Query: 1585 RTLVGRYKKSSQMAARLSQMCGILTMEALSVMQDVETRWWSTWAMIVRLLYLRKAI--KLHKSMDDVHSLLSDTDWEVLRLIEPILQPFMKAQKDLEGAQYVT 1887
            R +VG Y +SS   ARL  +   + + AL ++QDVETRW S +AM+ RL+ LRKA+  +L  S  D+ SL S T+W++   I  +++PF +A  +  G  Y T
Sbjct:  464 RAIVGHYSRSSTANARLHAVQKTMDLPALKLIQDVETRWSSEYAMLDRLVCLRKAVAAELASSNSDIDSL-SSTEWKLAGGIVEVMRPFAEATTEACGNAYPT 565          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig76.15168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
D8LCS5_ECTSI1.270e-6991.73Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A6H5KUY5_9PHAE1.210e-5374.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHP9_9PHAE4.630e-2750.00Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
A0A6H5JJV8_9PHAE1.880e-2648.48Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KVI1_9PHAE2.350e-2346.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7Y8_9PHAE2.960e-965.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7R9HHX7_9NEOP9.810e-940.78Hypothetical protein n=1 Tax=Timema monikensis Tax... [more]
A0A7R9E9C6_9NEOP1.610e-840.78Hypothetical protein n=1 Tax=Timema monikensis Tax... [more]
A0A7R8Z5H1_TIMDO1.870e-840.78Hypothetical protein n=1 Tax=Timema douglasi TaxID... [more]
A0A7R9IZA8_TIMCA1.920e-840.78(California timema) hypothetical protein n=1 Tax=T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig76contigC-linearis_contig76:255083..256972 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score221.5
Seed ortholog evalue2.2e-55
Seed eggNOG ortholog2880.D7G5Z0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size1892
Cds size366
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930442.7749255-UTR-C-linearis_contig76:255082..2566061622930442.7749255-UTR-C-linearis_contig76:255082..256606Chordaria linearis ClinC8C monoicousUTRC-linearis_contig76 255083..256606 +
1690881071.8146474-UTR-C-linearis_contig76:255082..2566061690881071.8146474-UTR-C-linearis_contig76:255082..256606Chordaria linearis ClinC8C monoicousUTRC-linearis_contig76 255083..256606 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930442.8026247-CDS-C-linearis_contig76:256606..2569721622930442.8026247-CDS-C-linearis_contig76:256606..256972Chordaria linearis ClinC8C monoicousCDSC-linearis_contig76 256607..256972 +
1690881071.825817-CDS-C-linearis_contig76:256606..2569721690881071.825817-CDS-C-linearis_contig76:256606..256972Chordaria linearis ClinC8C monoicousCDSC-linearis_contig76 256607..256972 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig76.15168.1prot_C-linearis_contig76.15168.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig76 256607..256972 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig76.15168.1

>prot_C-linearis_contig76.15168.1 ID=prot_C-linearis_contig76.15168.1|Name=mRNA_C-linearis_contig76.15168.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=122bp
MESTTSSVFNGRSLGALGLERTLVGRYKKSSQMAARLSQMCGILTMEALS
VMQDVETRWWSTWAMIVRLLYLRKAIKLHKSMDDVHSLLSDTDWEVLRLI
EPILQPFMKAQKDLEGAQYVTG
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mRNA from alignment at C-linearis_contig76:255083..256972+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig76.15168.1 ID=mRNA_C-linearis_contig76.15168.1|Name=mRNA_C-linearis_contig76.15168.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1890bp|location=Sequence derived from alignment at C-linearis_contig76:255083..256972+ (Chordaria linearis ClinC8C monoicous)
GCGCCGACTTGACACCTCTCCACCTTGTCATCCCTCTTTTTTTTTTGGCA CACGCTGCTGTCTCTGTCTGGTTGTACTGCAACCCCCTGCGTGGAGGACC CTCCATCCTGGTCTGCTTCTGGTGGTGTGGTACTCATGGGGTGCTGTGGT ATGCTGTTCTGTGTGTCACGCTGCTGATGTCATGCGGGCTCCGTATGTGT ATATTATGAAATATATGTCCCCATTTCGATTCACGGAACCCCCCCAATAT CGGCCAACATATCGGCTGTGCCGATAGATATTCGATTAGATATACAGGAT CACCCACCAACCTCATGTCTCATCTCGACACCTCCAAGCCTGGACGCAGG GAGGCACACACTGCGATCACGAGCTCGAAGGCAGCAGGCCCCGGCCCCAC TGCAGCAGCACGAAGACAAGCAGCGATCACTACCTTCCTCCTGAAGGAGG GTGGGGGGGCAGACTGGCACGACGATTTGGTTCGTCTCATCGTCAACAAC TACCTCGCTCTGTCGGTAAGTTTCGGTGTGTTTGTTGTAGTTTTTAAAAG TGTAAGTTTATCACCGATACAGCAGTGCTCATGTTTTTCCACGGAAGCCC GTGTTGTATTACATACCATGTGCAACTAATGTGCAAGTTTTCAGCGATAC AGCAGTGCTTTTTCTATTTTTCAAGGATGTGCGTGTTGGACATACATACC AGGACCATCTGTAAGTTTTCAACGAAACAGCAGTGCTGTTCCAAGGATGC TCGCGTTGGACATACACACCGGGACCATGCGTAAGTTTTCAGCGATACAG CAGTGCTTTTCCAAGGGTGCGCGCGTGTGTGGTGCGCCCGCGCTCCGCGA GCAGAGGGAGTCAAGGTCACACTGCCTATAAATAAATAAAAAGTCGTGCC CAACCAAGCAGTAACATTTTGTTTTTCGAAGGTGGCACGAAATAACTGCT GTGGGTTTGCCGTACACCGACCGCCGCCGCTTCAACTTTCACAGGCGGCA CCTTTCGAAACGATATGCAGCGCATCTGACTGTTGCCCCACTATTTACCC CCGTTCTGCCCTTTTGATCATTCGCAAGTTTGTCGAGTACCCGGATTTGA AGGCGGTCGTCTTGCGACTCAACAAAAAAGCCAAGGTCCCCGGCCGCCGC GAGCTTCTTTCGAGGATGCGCGCTGTCAAGACGGCCCTCGAACACGAAGT CGCCCTCATGCTGGATGACGAGTTCGTAGCGATCACCACGGACGGCTGGA CATCTCGGAGCAACGAGTCCCACATGTCGCTGACCGTGGCCTATATCGAC TCCGAGTGGAAGCTGCAATCTTTCTCTGGACTGCGCGAAGCACACAGGGA CAACCACGGGCGAGGACTTGGCGGCGTTGGTGGCGGGAATGGTTGCACGC CACGACCTAACCGGTCGGGTGACTGCGTGCGTCACCGATTGCGAGCCGTC TATGATCAAGGCGGGTCGCCTGCTTGAGGTGGGCGAGGGGTACGATTTCG CATATCGGCTGCTCCAACCACCGCATGGAGTCAACGACTTCATCGGTCTT CAACGGCAGGAGTCTTGGCGCCTTGGGCCTTGAGCGAACGCTAGTAGGAC GCTACAAGAAGTCGAGTCAGATGGCGGCTCGCCTCAGCCAAATGTGCGGC ATCCTCACCATGGAAGCACTGTCCGTGATGCAAGACGTGGAGACAAGGTG GTGGTCGACATGGGCGATGATCGTGCGTCTGCTCTACCTCAGGAAGGCCA TCAAGCTTCATAAGTCGATGGACGACGTCCACTCGCTGTTGTCGGACACG GACTGGGAGGTGCTGCGGCTGATCGAACCAATCCTGCAGCCGTTCATGAA GGCGCAGAAGGACCTGGAGGGGGCTCAGTACGTGACGGGT
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Coding sequence (CDS) from alignment at C-linearis_contig76:255083..256972+

>mRNA_C-linearis_contig76.15168.1 ID=mRNA_C-linearis_contig76.15168.1|Name=mRNA_C-linearis_contig76.15168.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at C-linearis_contig76:255083..256972+ (Chordaria linearis ClinC8C monoicous)
ATGGAGTCAACGACTTCATCGGTCTTCAACGGCAGGAGTCTTGGCGCCTT
GGGCCTTGAGCGAACGCTAGTAGGACGCTACAAGAAGTCGAGTCAGATGG
CGGCTCGCCTCAGCCAAATGTGCGGCATCCTCACCATGGAAGCACTGTCC
GTGATGCAAGACGTGGAGACAAGGTGGTGGTCGACATGGGCGATGATCGT
GCGTCTGCTCTACCTCAGGAAGGCCATCAAGCTTCATAAGTCGATGGACG
ACGTCCACTCGCTGTTGTCGGACACGGACTGGGAGGTGCTGCGGCTGATC
GAACCAATCCTGCAGCCGTTCATGAAGGCGCAGAAGGACCTGGAGGGGGC
TCAGTACGTGACGGGTATGGAGTCAACGACTTCATCGGTCTTCAACGGCA
GGAGTCTTGGCGCCTTGGGCCTTGAGCGAACGCTAGTAGGACGCTACAAG
AAGTCGAGTCAGATGGCGGCTCGCCTCAGCCAAATGTGCGGCATCCTCAC
CATGGAAGCACTGTCCGTGATGCAAGACGTGGAGACAAGGTGGTGGTCGA
CATGGGCGATGATCGTGCGTCTGCTCTACCTCAGGAAGGCCATCAAGCTT
CATAAGTCGATGGACGACGTCCACTCGCTGTTGTCGGACACGGACTGGGA
GGTGCTGCGGCTGATCGAACCAATCCTGCAGCCGTTCATGAAGGCGCAGA
AGGACCTGGAGGGGGCTCAGTACGTGACGGGT
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