mRNA_C-linearis_contig76.15168.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig76.15168.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI) HSP 1 Score: 245 bits (626), Expect = 1.270e-69 Identity = 122/133 (91.73%), Postives = 127/133 (95.49%), Query Frame = 1
Query: 1492 TISHIGCSNHRMESTTSSVFNGRSLGALGLERTLVGRYKKSSQMAARLSQMCGILTMEALSVMQDVETRWWSTWAMIVRLLYLRKAIKLHKSMDDVHSLLSDTDWEVLRLIEPILQPFMKAQKDLEGAQYVTG 1890
TISHIGCSNHRMESTTSSVFNGRSLGALGL RTLVGRYKKSSQMAARL Q+CGIL ME LSVMQDVETRWWSTWAM+VRLLYL KAIKLH+SMD+VH LLSDTDWEVLRLIEPIL+PFMKAQKDLEGAQYVTG
Sbjct: 130 TISHIGCSNHRMESTTSSVFNGRSLGALGLARTLVGRYKKSSQMAARLVQLCGILQMEPLSVMQDVETRWWSTWAMVVRLLYLMKAIKLHESMDEVHPLLSDTDWEVLRLIEPILRPFMKAQKDLEGAQYVTG 262
BLAST of mRNA_C-linearis_contig76.15168.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE) HSP 1 Score: 202 bits (513), Expect = 1.210e-53 Identity = 98/132 (74.24%), Postives = 115/132 (87.12%), Query Frame = 1
Query: 1495 ISHIGCSNHRMESTTSSVFNGRSLGALGLERTLVGRYKKSSQMAARLSQMCGILTMEALSVMQDVETRWWSTWAMIVRLLYLRKAIKLHKSMDDVHSLLSDTDWEVLRLIEPILQPFMKAQKDLEGAQYVTG 1890
+ HIGCSNHRMESTTSSVFNG+SLGAL R +VGRYK+SSQM+ RL+ GIL + LSV+QDVETRWWS+WAMI RLLYL KAIKLH+S D++ +LS+TDWEVLRLIEPIL+PFM+AQKDLEGA+YVTG
Sbjct: 167 LEHIGCSNHRMESTTSSVFNGKSLGALAKARAVVGRYKRSSQMSGRLAVFIGILKLSPLSVLQDVETRWWSSWAMIERLLYLMKAIKLHESTDNIAPVLSETDWEVLRLIEPILRPFMQAQKDLEGAKYVTG 298
BLAST of mRNA_C-linearis_contig76.15168.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE) HSP 1 Score: 128 bits (321), Expect = 4.630e-27 Identity = 66/132 (50.00%), Postives = 90/132 (68.18%), Query Frame = 1
Query: 1495 ISHIGCSNHRMESTTSSVFNGRSLG-ALGLERTLVGRYKKSSQMAARLSQMCGILTMEALSVMQDVETRWWSTWAMIVRLLYLRKAIKLHKSMDDVHSLLSDTDWEVLRLIEPILQPFMKAQKDLEGAQYVT 1887
++H+GC HR+ES TS F G + AL L R +V RY SSQ + RL Q+C I+ +E +V+QDVETRWWST+ I RL+ LR+ I H+ +D LL + DWEVL+L+E +L+PFM AQK LE ++ VT
Sbjct: 95 VTHLGCFCHRLESITSQAFGGPGVSKALALARGVVTRYTISSQASDRLEQVCDIVQVERKNVVQDVETRWWSTYVSICRLISLRRPITEHEIIDSTPPLLKEKDWEVLQLVESLLKPFMTAQKHLEASKEVT 226
BLAST of mRNA_C-linearis_contig76.15168.1 vs. uniprot
Match: A0A6H5JJV8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV8_9PHAE) HSP 1 Score: 124 bits (310), Expect = 1.880e-26 Identity = 64/132 (48.48%), Postives = 89/132 (67.42%), Query Frame = 1
Query: 1495 ISHIGCSNHRMESTTSSVFNGRSLG-ALGLERTLVGRYKKSSQMAARLSQMCGILTMEALSVMQDVETRWWSTWAMIVRLLYLRKAIKLHKSMDDVHSLLSDTDWEVLRLIEPILQPFMKAQKDLEGAQYVT 1887
++H+GC HR+ES TS F G + AL L R +V RY SSQ + RL QM I+ +E V+QDVETRWWST+A I RLL LR+ I H+ +D + LL + DWEVL+++EP+ +PF+ +QK E ++ VT
Sbjct: 139 VTHLGCFCHRLESITSQAFGGPGVSKALALARRVVTRYNMSSQASDRLEQMRDIVQVERKKVVQDVETRWWSTYASICRLLSLRRPITEHERIDSIPPLLKEKDWEVLQVVEPLSKPFILSQKHREASKDVT 270
BLAST of mRNA_C-linearis_contig76.15168.1 vs. uniprot
Match: A0A6H5KVI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI1_9PHAE) HSP 1 Score: 113 bits (282), Expect = 2.350e-23 Identity = 62/132 (46.97%), Postives = 80/132 (60.61%), Query Frame = 1
Query: 1495 ISHIGCSNHRMESTTSSVFNGRSLG-ALGLERTLVGRYKKSSQMAARLSQMCGILTMEALSVMQDVETRWWSTWAMIVRLLYLRKAIKLHKSMDDVHSLLSDTDWEVLRLIEPILQPFMKAQKDLEGAQYVT 1887
+SH+GC HR ES TS F G + AL L R +V RY SSQ + RL QMC I+ +E V+QDVETRWWST + +D + LL++ DWEVL+L+EP+L PFM AQK LE ++ VT
Sbjct: 83 VSHLGCFCHRFESITSQAFGGPGVSKALALPRGVVTRYTMSSQASNRLEQMCDIVQVERKKVVQDVETRWWST----------------PREIDSIPPLLNEKDWEVLQLVEPLLHPFMTAQKHLEASKGVT 198
BLAST of mRNA_C-linearis_contig76.15168.1 vs. uniprot
Match: A0A6H5L7Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Y8_9PHAE) HSP 1 Score: 71.6 bits (174), Expect = 2.960e-9 Identity = 34/52 (65.38%), Postives = 41/52 (78.85%), Query Frame = 3
Query: 1320 LSLDCAKHTGTTTGEDLAALVAGMVARHDLTGRVTACVTDCEPSMIKAGRLL 1475
LS+DC+K GTTTG+ LAA + VA+H LTG+VTA TDCEPSM+K GRLL
Sbjct: 73 LSVDCSKSEGTTTGDALAAGIKATVAKHGLTGKVTAVTTDCEPSMVKMGRLL 124
BLAST of mRNA_C-linearis_contig76.15168.1 vs. uniprot
Match: A0A7R9HHX7_9NEOP (Hypothetical protein n=1 Tax=Timema monikensis TaxID=170555 RepID=A0A7R9HHX7_9NEOP) HSP 1 Score: 69.3 bits (168), Expect = 9.810e-9 Identity = 42/103 (40.78%), Postives = 63/103 (61.17%), Query Frame = 1
Query: 1585 RTLVGRYKKSSQMAARLSQMCGILTMEALSVMQDVETRWWSTWAMIVRLLYLRKAI--KLHKSMDDVHSLLSDTDWEVLRLIEPILQPFMKAQKDLEGAQYVT 1887
R +VG Y +SS ARL + + + AL ++QDVETRW S +AM+ RL+ LRKA+ +L S D+ SL S T+W++ I +++PF +A + G Y T
Sbjct: 165 RAIVGHYSRSSTANARLHAVQKTMDLPALKLIQDVETRWSSEYAMLDRLVCLRKAVAAELASSNSDIDSL-SSTEWKLAGGIVEVMRPFAEASTEACGNAYPT 266
BLAST of mRNA_C-linearis_contig76.15168.1 vs. uniprot
Match: A0A7R9E9C6_9NEOP (Hypothetical protein n=1 Tax=Timema monikensis TaxID=170555 RepID=A0A7R9E9C6_9NEOP) HSP 1 Score: 69.3 bits (168), Expect = 1.610e-8 Identity = 42/103 (40.78%), Postives = 63/103 (61.17%), Query Frame = 1
Query: 1585 RTLVGRYKKSSQMAARLSQMCGILTMEALSVMQDVETRWWSTWAMIVRLLYLRKAI--KLHKSMDDVHSLLSDTDWEVLRLIEPILQPFMKAQKDLEGAQYVT 1887
R +VG Y +SS ARL + + + AL ++QDVETRW S +AM+ RL+ LRKA+ +L S D+ SL S T+W++ I +++PF +A + G Y T
Sbjct: 308 RAIVGHYSRSSTANARLHAVQKTMDLPALKLIQDVETRWSSEYAMLDRLVCLRKAVAAELASSNSDIDSL-SSTEWKLAGGIVEVMRPFAEASTEACGNAYPT 409
BLAST of mRNA_C-linearis_contig76.15168.1 vs. uniprot
Match: A0A7R8Z5H1_TIMDO (Hypothetical protein n=1 Tax=Timema douglasi TaxID=61478 RepID=A0A7R8Z5H1_TIMDO) HSP 1 Score: 68.9 bits (167), Expect = 1.870e-8 Identity = 42/103 (40.78%), Postives = 63/103 (61.17%), Query Frame = 1
Query: 1585 RTLVGRYKKSSQMAARLSQMCGILTMEALSVMQDVETRWWSTWAMIVRLLYLRKAI--KLHKSMDDVHSLLSDTDWEVLRLIEPILQPFMKAQKDLEGAQYVT 1887
R +VG Y +SS ARL + + + AL ++QDVETRW S +AM+ RL+ LRKA+ +L S D+ SL S T+W++ I +++PF +A + G Y T
Sbjct: 308 RAIVGHYSRSSTANARLHAVQKTMDLPALKLIQDVETRWSSEYAMLDRLVCLRKAVAAELASSNSDIDSL-SSTEWKLAGGIVEVMRPFAEATTEACGNAYPT 409
BLAST of mRNA_C-linearis_contig76.15168.1 vs. uniprot
Match: A0A7R9IZA8_TIMCA ((California timema) hypothetical protein n=1 Tax=Timema californicum TaxID=61474 RepID=A0A7R9IZA8_TIMCA) HSP 1 Score: 68.9 bits (167), Expect = 1.920e-8 Identity = 42/103 (40.78%), Postives = 63/103 (61.17%), Query Frame = 1
Query: 1585 RTLVGRYKKSSQMAARLSQMCGILTMEALSVMQDVETRWWSTWAMIVRLLYLRKAI--KLHKSMDDVHSLLSDTDWEVLRLIEPILQPFMKAQKDLEGAQYVT 1887
R +VG Y +SS ARL + + + AL ++QDVETRW S +AM+ RL+ LRKA+ +L S D+ SL S T+W++ I +++PF +A + G Y T
Sbjct: 464 RAIVGHYSRSSTANARLHAVQKTMDLPALKLIQDVETRWSSEYAMLDRLVCLRKAVAAELASSNSDIDSL-SSTEWKLAGGIVEVMRPFAEATTEACGNAYPT 565 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig76.15168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig76.15168.1 >prot_C-linearis_contig76.15168.1 ID=prot_C-linearis_contig76.15168.1|Name=mRNA_C-linearis_contig76.15168.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=122bp MESTTSSVFNGRSLGALGLERTLVGRYKKSSQMAARLSQMCGILTMEALSback to top mRNA from alignment at C-linearis_contig76:255083..256972+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig76.15168.1 ID=mRNA_C-linearis_contig76.15168.1|Name=mRNA_C-linearis_contig76.15168.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1890bp|location=Sequence derived from alignment at C-linearis_contig76:255083..256972+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig76:255083..256972+ >mRNA_C-linearis_contig76.15168.1 ID=mRNA_C-linearis_contig76.15168.1|Name=mRNA_C-linearis_contig76.15168.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at C-linearis_contig76:255083..256972+ (Chordaria linearis ClinC8C monoicous)back to top |