mRNA_C-linearis_contig76.15158.1 (mRNA) Chordaria linearis ClinC8C monoicous
|
Overview
Homology
BLAST of mRNA_C-linearis_contig76.15158.1 vs. uniprot
Match: A0A6H5LD19_9PHAE (MPN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD19_9PHAE) HSP 1 Score: 577 bits (1488), Expect = 3.730e-198 Identity = 354/552 (64.13%), Postives = 396/552 (71.74%), Query Frame = 1
Query: 37 MSLQQCTLSWQAFTTCTSHAMSTEKQEVMGLLLGRWHDGTVPGRDGGSAGSCPTVTVDHAMILTRTDKREDRVEVGYKQLAEAADIAERMSSQLGQDTRVVGWYHSHPHITVLPSHVDVRTQGQYQSMDKRFIGLIFSVFSEDKHSKVGTIEVTAFQARNTSEAMDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSTTPLSDALERVVRLQDTLFGEERAGYLAALRQSNATAGGVGGRSAEPLDAESSPQNENASSKDEGVDLLS-KLFCSAVYSKSLAALSGDSAVPLAQTLRSQLNILRNRAALLDQHGCELRSQLTPDELREATSAAQSRLRDPCSAGLGAFQAKHEGELDIPRADALRFAREGGSLRKEGRIIQSNAAITVRIFREYSQPQQLLGQQQQQEGAAKEPAATPSTSSGMWSAGAEAGAEMDGSGXXXXXXXXXXXXYGGVWVAELAGRRKTLFGLRAA-PEAEETGSMFSRRSRGKPTKRGLLLETRESGEELLLCDDQESYRMWLGVAAAIFPSVAAGDLAA 1686
MSLQ+CTLSWQAFTTC SHAMSTEKQEVMGLLLGRWHDGT GRDG S CP VTVDHAMILTRTDKREDRVEVGYKQLAEAADIAERMS+QLGQDTRVVGWYHSHPHITVLPSHVDVRTQGQYQSMD+RFIGLIFSVFSEDKHSKVGTIEVTAFQAR+TS+ MDV XXXXXXXXXXXXXXXX SSTTPLSDALERVVRLQDTLFGEERAGYLAALRQ++A G E D ES PQ+ + EG D L+ K F VYSKSL ALSGDSAVPLAQTLRSQL IL+NRAA L+Q ELR+ LTP EL EA ++A+++LR PCSAG+GAFQAKHEGELDIPRADALRF R GG LR++ ++ N A+ VR+FREY A +TSS + E + +WV E+AG++KTL GLRAA P A+ G+ K +RGL++ETRE GEE+LLCDDQ+S+R+WLGVAAA+FPS A AA
Sbjct: 1 MSLQRCTLSWQAFTTCASHAMSTEKQEVMGLLLGRWHDGT--GRDGTS---CPAVTVDHAMILTRTDKREDRVEVGYKQLAEAADIAERMSAQLGQDTRVVGWYHSHPHITVLPSHVDVRTQGQYQSMDRRFIGLIFSVFSEDKHSKVGTIEVTAFQARDTSDPMDVDAAVGXXXXXXXXXXXXXXXXRTEVALSLHGPGSG--------SSTTPLSDALERVVRLQDTLFGEERAGYLAALRQNDAMVG-----EEESFDTES-PQDTRTRRRGEGEDRLALKAFLLGVYSKSLVALSGDSAVPLAQTLRSQLKILQNRAAALEQRQLELRASLTPGELEEALASARAKLRAPCSAGIGAFQAKHEGELDIPRADALRFGRHGGPLRRQRILMSGNTAVNVRVFREY---------------------AKRATSSAAIADRVETSDSREAGDA--------------LWVVEIAGKKKTLLGLRAAAPAADGCGT-------SKQQERGLVIETREGGEEVLLCDDQDSFRLWLGVAAAVFPSGTAAAAAA 491
BLAST of mRNA_C-linearis_contig76.15158.1 vs. uniprot
Match: D7FVU5_ECTSI (MPN domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVU5_ECTSI) HSP 1 Score: 556 bits (1432), Expect = 5.210e-190 Identity = 348/526 (66.16%), Postives = 389/526 (73.95%), Query Frame = 1
Query: 121 MGLLLGRWHDGTVPGRDGGSAGSCPTVTVDHAMILTRTDKREDRVEVGYKQLAEAADIAERMSSQLGQDTRVVGWYHSHPHITVLPSHVDVRTQGQYQSMDKRFIGLIFSVFSEDKHSKVGTIEVTAFQARNTSEAMDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSTTPLSDALERVVRLQDTLFGEERAGYLAALRQSNATAGGVGGRSAEPLDAESSPQNENASSKDEGVDLLSKLFCSAVYSKSLAALSGDSAVPLAQTLRSQLNILRNRAALLDQHGCELRSQLTPDELREATSAAQSRLRDPCSAGLGAFQAKHEGELDIPRADALRFAREGGSLRKEGRIIQSNAAITVRIFREYSQPQQLLGQQQQQEGAAKEPAATPSTSSGMWSAGAEAGAEMDGSGXXXXXXXXXXXXYGGVWVAELAGRRKTLFGLRAAPEAEETGSMFSRRSRGKPTKRGLLLETRESGEELLLCDDQESYRMWLGVAAAIFPSVAAGDLAAI*SR 1698
MGLLLGRWHDGT GRDG S CP VTVDHAMILTRTDKREDRVEVGYKQLAEAADIAE+MS+QLGQDTRVVGWYHSHPHITVLPSHVDVRTQGQYQSMD+RFIGLIFSVFSEDKHSKVGTIEVTAFQAR+TSE MDV XXXXXXXXXXXXXXXXXXXXXXXX SSTTPLSDALERVVRLQDTLFGEERAGYLAALRQ++A G EP DAES PQ+ + G+DLLSK+FCSAVYSKSLAALSGDSAVPLAQTLRSQLNIL+NRAA L+QH ELR+ LTP EL A ++A ++LR PCSAG+GAFQAKHEGELDIPRADALRFAR+GG LR++ ++ +N A+ VR+FREY AT + SS + E + G +WVAE+AG+RKTL GLRAA A + + +RGL++ETRE GEE+LLCDDQES+R+WLGVAAA+FPS A AA SR
Sbjct: 1 MGLLLGRWHDGT--GRDGTS---CPAVTVDHAMILTRTDKREDRVEVGYKQLAEAADIAEKMSAQLGQDTRVVGWYHSHPHITVLPSHVDVRTQGQYQSMDRRFIGLIFSVFSEDKHSKVGTIEVTAFQARDTSEPMDVDAXXXXXXXXXXXXXXXXXXXXXXXXRTEVALSLHGPGSG---SSTTPLSDALERVVRLQDTLFGEERAGYLAALRQNDAMVG-----EEEPFDAES-PQDTRTRRRGGGIDLLSKIFCSAVYSKSLAALSGDSAVPLAQTLRSQLNILQNRAAALEQHQVELRALLTPGELEGALASASAKLRAPCSAGIGAFQAKHEGELDIPRADALRFARQGGPLRRQRILMSANTAVNVRVFREY---------------------ATQARSSAAIADRVEISDSREAGGA--------------LWVAEIAGKRKTLLGLRAAAPAADGSNXXX----XXXXERGLVIETREGGEEVLLCDDQESFRLWLGVAAAVFPSGAPAAAAAAASR 473
BLAST of mRNA_C-linearis_contig76.15158.1 vs. uniprot
Match: A0A836CFJ1_9STRA (MPN domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFJ1_9STRA) HSP 1 Score: 186 bits (471), Expect = 1.860e-50 Identity = 118/274 (43.07%), Postives = 151/274 (55.11%), Query Frame = 1
Query: 217 MILTRTDKREDRVEVGYKQLAEAADIAERMSSQLGQDTRVVGWYHSHPHITVLPSHVDVRTQGQYQSMDKRFIGLIFSVFSEDKHSKVGTIEVTAFQARNTSEAMDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSTTPLSDALERVVRLQDTLFGEERAGYLAALRQSNATAGGVGGRSAEPLDAESSPQNENASSKDEGVDLLSKLFCSAVYSKSLAALSGDSAVPLAQTLRSQLNILRNRAALLDQHGCELRSQL 1038
M+LTRTDK+ DR EV +QLA A+ +AE MS QLG+ RV GWYHSHPHITVLPSHVDVRTQ QYQ MD+ FIGLIF+VF +D KVG IEVTAFQ+ +S A S P++DAL + LQ+TLF EERA YL+AL+Q G+G + + DLL +++CSAVYSKSL +L G+S +PL QTL++ L +A L+Q L+S++
Sbjct: 1 MVLTRTDKQPDRCEVSVEQLAAASTVAENMSRQLGKTVRVCGWYHSHPHITVLPSHVDVRTQMQYQFMDEGFIGLIFAVFQQDGQ-KVGKIEVTAFQSMKSSSAAS------QVHTHDAGTSASDSGKQLPVHSEWVGKNIPLAIHPPDGGSAVPIADALNVLCGLQNTLFEEERAAYLSALQQHR----GLGATATQD-------------------DLLEQVYCSAVYSKSLTSLLGESMLPLLQTLKAHAKNLHAKADALEQSNAALQSRI 244
BLAST of mRNA_C-linearis_contig76.15158.1 vs. uniprot
Match: UPI00051512E8 (lys-63-specific deubiquitinase BRCC36 n=1 Tax=Phalacrocorax carbo TaxID=9209 RepID=UPI00051512E8) HSP 1 Score: 156 bits (394), Expect = 7.720e-40 Identity = 85/164 (51.83%), Postives = 109/164 (66.46%), Query Frame = 1
Query: 37 MSLQQCTLSWQAFTTCTSHAMSTEKQEVMGLLLGRWHD--GTVPGRDGGSAG----SCPTVTVDHAMILTRTDKREDRVEVGYKQLAEAADIAERMSSQLGQDTRVVGWYHSHPHITVLPSHVDVRTQGQYQSMDKRFIGLIFSVFSEDKHSKVGTIEVTAFQA 510
M++Q L AF C +HA+STEK+EVMGL +G G GR+G AG + V + +IL R+DKR+DRVE+ +QL+ A+ AER++ G+ RVVGWYHSHPHITV PSHVDVRTQ YQ MD+ F+GLIFS F EDK++K G I T FQ+
Sbjct: 1 MAVQAVHLEADAFLVCLNHALSTEKEEVMGLCIGEVQGLVGAALGRNGWRAGDTVDTSRIVHIHSVIILRRSDKRKDRVEISPEQLSAASTEAERLADMTGRPMRVVGWYHSHPHITVWPSHVDVRTQAMYQMMDQGFVGLIFSCFIEDKNTKTGRILYTCFQS 164
BLAST of mRNA_C-linearis_contig76.15158.1 vs. uniprot
Match: UPI0013F2751B (lys-63-specific deubiquitinase BRCC36 n=1 Tax=Hylobates moloch TaxID=81572 RepID=UPI0013F2751B) HSP 1 Score: 152 bits (385), Expect = 4.220e-39 Identity = 82/167 (49.10%), Postives = 110/167 (65.87%), Query Frame = 1
Query: 40 SLQQCTLSWQAFTTCTSHAMSTEKQEVMGLLLGRWHDGTVPGRDGGSAGSCPTVTVDHAMILTRTDKREDRVEVGYKQLAEAADIAERMSSQLGQDTRVVGWYHSHPHITVLPSHVDVRTQGQYQSMDKRFIGLIFSVFSEDKHSKVGTIEVTAFQ---ARNTSEAM 531
++Q L AF C +HA+STEK+EVMGL +G +D T + V + +IL R+DKR+DRVE+ +QL+ A+ AER++ G+ RVVGWYHSHPHITV PSHVDVRTQ YQ MD+ F+GLIFS F EDK++K G + T FQ A+ +SE++
Sbjct: 8 AVQAVHLESDAFLVCLNHALSTEKEEVMGLCIGELNDDT-------RVDAVRIVHIHSVIILRRSDKRKDRVEISPEQLSAASTEAERLAELTGRPMRVVGWYHSHPHITVWPSHVDVRTQAMYQMMDQGFVGLIFSCFIEDKNTKTGRVLYTCFQSIQAQKSSESL 167
BLAST of mRNA_C-linearis_contig76.15158.1 vs. uniprot
Match: A0A3R7P3R7_PENVA (Lys-63-specific deubiquitinase BRCC36 n=4 Tax=Penaeus TaxID=133894 RepID=A0A3R7P3R7_PENVA) HSP 1 Score: 154 bits (390), Expect = 8.620e-39 Identity = 80/155 (51.61%), Postives = 107/155 (69.03%), Query Frame = 1
Query: 58 LSWQAFTTCTSHAMSTEKQEVMGLLLGRWHDGTVPGRDGGSAGSCPTVTVDHAMILTRTDKREDRVEVGYKQLAEAADIAERMSSQLGQDTRVVGWYHSHPHITVLPSHVDVRTQGQYQSMDKRFIGLIFSVFSEDKHSKVGTIEVTAFQARNTS 522
L+ A+ C HA++TEK+EVMGLL+G++ S G+ T + A+ L R+DKR+DRVE+ + L EA AE+MS+ GQ+ +VGWYHSHPHITV PS +D++TQ YQ MD RFIGLIFSV++EDK +KVG+ +VT FQA N S
Sbjct: 8 LAADAYLVCLHHALTTEKEEVMGLLVGQF-----------SEGNEVTCDIYSAVTLRRSDKRKDRVEISPEMLIEAQQKAEQMSASSGQELHIVGWYHSHPHITVWPSDIDLQTQAGYQQMDSRFIGLIFSVYNEDKKTKVGSHQVTCFQATNQS 151
BLAST of mRNA_C-linearis_contig76.15158.1 vs. uniprot
Match: UPI001C44DEF6 (lys-63-specific deubiquitinase BRCC36-like n=2 Tax=Astacidea TaxID=6712 RepID=UPI001C44DEF6) HSP 1 Score: 154 bits (388), Expect = 1.630e-38 Identity = 79/155 (50.97%), Postives = 106/155 (68.39%), Query Frame = 1
Query: 58 LSWQAFTTCTSHAMSTEKQEVMGLLLGRWHDGTVPGRDGGSAGSCPTVTVDHAMILTRTDKREDRVEVGYKQLAEAADIAERMSSQLGQDTRVVGWYHSHPHITVLPSHVDVRTQGQYQSMDKRFIGLIFSVFSEDKHSKVGTIEVTAFQARNTS 522
L+ A+ C HA++TEK+EV+GLL+G + +GT D + A+ L R+DKR+DRVE+ + L EA AE+MS+ GQ+ +VGWYHSHPHITV PS +D++TQ YQ MD RFIGLIFSV++EDK +KVG+ +VT FQA N S
Sbjct: 8 LAADAYLVCLHHALTTEKEEVLGLLVGEFSEGTEVVCD-----------IHSAVTLRRSDKRKDRVEISPEMLIEAQQRAEQMSASSGQELHIVGWYHSHPHITVWPSDIDLQTQAGYQQMDSRFIGLIFSVYNEDKKTKVGSHQVTCFQATNQS 151
BLAST of mRNA_C-linearis_contig76.15158.1 vs. uniprot
Match: UPI0018A24067 (lys-63-specific deubiquitinase BRCC36 isoform X3 n=2 Tax=Chelonia mydas TaxID=8469 RepID=UPI0018A24067) HSP 1 Score: 152 bits (384), Expect = 2.280e-38 Identity = 82/170 (48.24%), Postives = 109/170 (64.12%), Query Frame = 1
Query: 37 MSLQQCTLSWQAFTTCTSHAMSTEKQEVMGLLLGRWHDGTVPG---RDGGSAGSCPTVTVDHAMILTRTDKREDRVEVGYKQLAEAADIAERMSSQLGQDTRVVGWYHSHPHITVLPSHVDVRTQGQYQSMDKRFIGLIFSVFSEDKHSKVGTIEVTAFQARNTSEAMDV 537
M++Q L AF C +HA+STEK+EVMGL +G G G G + V + +IL R+DKR+DRVE+ +QL+ A+ AER++ G+ RVVGWYHSHPHITV PSHVDVRTQ YQ MD+ F+GLIFS F EDK++K G I T FQ+ ++ ++
Sbjct: 1 MAVQAVHLEADAFLVCLNHALSTEKEEVMGLCIGEVPAGPRAGGLPEPGRWVDTSRIVHIHSVIILRRSDKRKDRVEISPEQLSAASTEAERLAEITGRSMRVVGWYHSHPHITVWPSHVDVRTQAMYQMMDQGFVGLIFSCFIEDKNTKTGRILYTCFQSIQAQKSSEI 170
BLAST of mRNA_C-linearis_contig76.15158.1 vs. uniprot
Match: A0A7R9NZ60_9NEOP (Hypothetical protein n=4 Tax=Timema TaxID=61471 RepID=A0A7R9NZ60_9NEOP) HSP 1 Score: 153 bits (386), Expect = 2.910e-38 Identity = 78/162 (48.15%), Postives = 107/162 (66.05%), Query Frame = 1
Query: 37 MSLQQCTLSWQAFTTCTSHAMSTEKQEVMGLLLGRWHDGTVPGRDGGSAGSCPTVTVDHAMILTRTDKREDRVEVGYKQLAEAADIAERMSSQLGQDTRVVGWYHSHPHITVLPSHVDVRTQGQYQSMDKRFIGLIFSVFSEDKHSKVGTIEVTAFQARNTS 522
M+L ++ + C HA+STEK+EVMGLL+G T+ + ++L R+DKR+DRVE+ +QL +AA A++++ +LGQ RV+GWYHSHPHITV PSH+DVRTQ YQ MDK F+G+IFSVFSEDK +K ++VT FQ+ N S
Sbjct: 1 MALHSVCMAADVYLVCLQHALSTEKEEVMGLLIG-------------DVDCERTLHISAVVMLRRSDKRKDRVEISPEQLTKAAIQADKLTHELGQPMRVLGWYHSHPHITVWPSHIDVRTQAMYQMMDKCFVGIIFSVFSEDKSTKEQQVQVTCFQSLNQS 149
BLAST of mRNA_C-linearis_contig76.15158.1 vs. uniprot
Match: A0A7K6MAF1_PANBI (Lys-63-specific deubiquitinase (Fragment) n=2 Tax=Passeriformes TaxID=9126 RepID=A0A7K6MAF1_PANBI) HSP 1 Score: 154 bits (388), Expect = 6.130e-38 Identity = 86/174 (49.43%), Postives = 110/174 (63.22%), Query Frame = 1
Query: 34 QMSLQQCTLSWQAFTTCTSHAMSTEKQEVMGLLLGRWHDGTVPGRDG--------------GSAG-SCPTVTVDHAMILTRTDKREDRVEVGYKQLAEAADIAERMSSQLGQDTRVVGWYHSHPHITVLPSHVDVRTQGQYQSMDKRFIGLIFSVFSEDKHSKVGTIEVTAFQA 510
+M++Q L AF C +HA+STEK+EVMGL +G PGR G G+AG V + +IL R+DKR+DRVE+ +QL+ A+ AE ++ G+ RVVGWYHSHPHITV PSHVDVRTQ YQ MD+ F+GLIFS F EDK++KVG I T FQ+
Sbjct: 2 KMAVQAVHLEADAFLVCLNHALSTEKEEVMGLCIGEVPPAEGPGRGGWRRCLCRLWPARGRGTAGRGFRIVHIHSVIILRRSDKRKDRVEISPEQLSAASTEAEMLAEMTGRPMRVVGWYHSHPHITVWPSHVDVRTQAMYQMMDQGFVGLIFSCFIEDKNTKVGRILYTCFQS 175 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig76.15158.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig76.15158.1 >prot_C-linearis_contig76.15158.1 ID=prot_C-linearis_contig76.15158.1|Name=mRNA_C-linearis_contig76.15158.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=552bp MSLQQCTLSWQAFTTCTSHAMSTEKQEVMGLLLGRWHDGTVPGRDGGSAGback to top mRNA from alignment at C-linearis_contig76:132343..139588+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig76.15158.1 ID=mRNA_C-linearis_contig76.15158.1|Name=mRNA_C-linearis_contig76.15158.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=7246bp|location=Sequence derived from alignment at C-linearis_contig76:132343..139588+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig76:132343..139588+ >mRNA_C-linearis_contig76.15158.1 ID=mRNA_C-linearis_contig76.15158.1|Name=mRNA_C-linearis_contig76.15158.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3312bp|location=Sequence derived from alignment at C-linearis_contig76:132343..139588+ (Chordaria linearis ClinC8C monoicous)back to top |