mRNA_C-linearis_contig76.15154.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig76.15154.1
Unique NamemRNA_C-linearis_contig76.15154.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig76.15154.1 vs. uniprot
Match: A0A6H5KUR8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUR8_9PHAE)

HSP 1 Score: 244 bits (624), Expect = 3.400e-69
Identity = 163/224 (72.77%), Postives = 172/224 (76.79%), Query Frame = 2 
Query:  434 GAAAVTPGQGTDPEQPIPASGERGTVGVGAREEECTAPATAATGEKGRQAPPATPAXAAAPQGVGCISXXXXXXXXXXXXXXTAIDGAMSVSAAGAAGARGVQVVSSSNLNLLATICLLEENVI-------GGGDGANHDETVPIEEVAPDLSQELEATQVTGTQPDEAVAAPASAQAVVETVTPGQDTEREQPVPASEALVAGDVAVQAAGEADAGEVMPTSS 1084
            GAA VTPGQGTDPEQP+PASGERGTV VGAR EECTAPAT                      G GCISXXXXXXXXXXX   TAID A SVSAAG AGA GV++ SSSNLNLLAT+CLLEEN         GGGDGANHDETVPI + APDLSQEL  TQVTGTQPDEA+AAPASAQ VVETVTPGQDTER+QP+PASEALVAG V VQAAGEA AG+VMPT S
Sbjct:  432 GAAVVTPGQGTDPEQPVPASGERGTV-VGARAEECTAPAT----------------------GGGCISXXXXXXXXXXXESGTAIDAATSVSAAGTAGAGGVEMASSSNLNLLATVCLLEENGSCGGIESGGGGDGANHDETVPIGDCAPDLSQELAVTQVTGTQPDEALAAPASAQVVVETVTPGQDTERQQPLPASEALVAGGVEVQAAGEAGAGDVMPTLS 632
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BLAST of mRNA_C-linearis_contig76.15154.1 vs. uniprot
Match: A0A6H5K7R7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7R7_9PHAE)

HSP 1 Score: 229 bits (583), Expect = 2.110e-63
Identity = 158/246 (64.23%), Postives = 170/246 (69.11%), Query Frame = 2 
Query:  389 QEYAIPVAEADSDDDGAAAVTPGQGTDPEQPIPASGERGTVGVGAREEECTAPATAATGEKGRQAPPATPAXAAAPQGVGCISXXXXXXXXXXXXXXTAIDGAMSVSAAG-AAGARGVQVVSSSNLNLLATICLLEENVI-------GGGDGANHDETVPIEEVAPDLSQELEATQVTGTQPDEAVAAP-ASAQAVVETVTPGQDTEREQPVPASEALVAGDVAVQAAGEADAGEVMPTSSELGGV 1099
            +EYA+PVAEADSDDDGAA V PGQGTDP QP+PASGERG V +GAR EECTAPAT                      G   IS     XXXXXX   TA D A SVSAAG AAGA G+++ SSSNL LLAT+C+  EN         GGGDGANHDETVPIE+ APD SQEL  TQVTGTQPDEAVAA  ASAQAVVET TP QDTEREQP+P  EALVAG V VQ  GEA AG+VM TSS   GV
Sbjct:  463 EEYAVPVAEADSDDDGAAVVPPGQGTDPAQPVPASGERGRVEIGARGEECTAPAT----------------------GGWFISRSGGGXXXXXXESGTAKDAATSVSAAGPAAGAGGLEMASSSNLQLLATVCVRAENESYGGIESGGGGDGANHDETVPIEDGAPDFSQELAVTQVTGTQPDEAVAAASASAQAVVETATPVQDTEREQPLPPREALVAGGVEVQVVGEAGAGDVMRTSSGSVGV 686
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BLAST of mRNA_C-linearis_contig76.15154.1 vs. uniprot
Match: A0A6H5JNB8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNB8_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 3.090e-35
Identity = 119/229 (51.97%), Postives = 129/229 (56.33%), Query Frame = 2 
Query:  434 GAAAVTPGQGTDPEQPIPASGERGTVGVGAREEECTAPATAATGEKGRQAPPATPAXAAAPQGVGCISXXXXXXXXXXXXXXTAIDGAMSVSAAGAAGARGVQVVSSSNLNLLATICLLEENVI-------GGGDGANHDETVPIEEVAPDLSQELEATQVTGTQPDEAVAAPASAQAVVETVTPGQDTEREQPVPASEALVAGDVAVQAAGEADAGEVMPTSSELGGV 1099
            GAA VTPGQG DPEQ + ASGERGTV  GAREEECTAPAT                      G GCIS XXXXXXXXXX   TAID A SVSAA      GV++ SSSNL LLAT+CLLEEN          GGDGA H+ETVPIE+ APDLSQEL ATQV G+QP                                  +V GDV VQAAGEA   ++MPTS E   V
Sbjct:  352 GAAVVTPGQGADPEQSVLASGERGTVEDGAREEECTAPAT----------------------GGGCISSXXXXXXXXXXESGTAIDAATSVSAAXXXXXGGVEMASSSNLELLATVCLLEENGSCGGIESGDGGDGARHEETVPIEDGAPDLSQELVATQVNGSQP----------------------------------VVEGDVTVQAAGEAGTVDMMPTSVESADV 524
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BLAST of mRNA_C-linearis_contig76.15154.1 vs. uniprot
Match: D8LFH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFH6_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 1.460e-30
Identity = 84/126 (66.67%), Postives = 90/126 (71.43%), Query Frame = 2 
Query:  743 VVSSSNLNLLATICLLEENVI-------GGGDGANHDETVPIEEVAPDLSQELEATQVTGTQPDEAVAAPASAQAVVETVTPGQDTEREQPVPASEALVAGDVAVQAAGEADAGEVMPTSSELGGV 1099
            + SSSNLNLLAT+CLLE N         GGGDGAN DETVPIE+ A DLSQEL AT+VT TQPDE VAAPASA          QDTE EQP PAS+ALVAG VAVQAAGEA A +VMPTS    GV
Sbjct:    1 MASSSNLNLLATVCLLEGNGSCGGIESGGGGDGANRDETVPIEDGALDLSQELAATRVTSTQPDEPVAAPASA----------QDTECEQPSPASDALVAGGVAVQAAGEAGADDVMPTSRGSAGV 116
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BLAST of mRNA_C-linearis_contig76.15154.1 vs. uniprot
Match: A0A6H5JA48_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA48_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 3.170e-25
Identity = 72/90 (80.00%), Postives = 75/90 (83.33%), Query Frame = 2 
Query:  833 ETVPIEEVAPDLSQELEATQVTGTQPDEAVAAP-ASAQAVVETVTPGQDTEREQPVPASEALVAGDVAVQAAGEADAGEVMPTSSELGGV 1099
            ETVPI + APDLSQEL ATQVTGTQPDEAVAA  AS QAVVET TPGQDTE EQP+PASEALVAGDV VQAAGEA A +VM TSS   GV
Sbjct:   28 ETVPIGDDAPDLSQELAATQVTGTQPDEAVAAASASPQAVVETATPGQDTEHEQPLPASEALVAGDVGVQAAGEAGAADVMLTSSGSVGV 117
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BLAST of mRNA_C-linearis_contig76.15154.1 vs. uniprot
Match: D7FTT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTT9_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 6.700e-13
Identity = 47/57 (82.46%), Postives = 49/57 (85.96%), Query Frame = 2 
Query:  854 VAPDLSQELEATQVTGTQPDEAVAAPASAQAVVETVTPGQDTEREQPVPASEALVAG 1024
            V PDLSQEL ATQVTGTQPDEAVAAPASAQAVV+ VTP  +TE EQPVPA EALV G
Sbjct: 2002 VVPDLSQELAATQVTGTQPDEAVAAPASAQAVVKAVTPVTETEHEQPVPAREALVKG 2058
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig76.15154.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KUR8_9PHAE3.400e-6972.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7R7_9PHAE2.110e-6364.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNB8_9PHAE3.090e-3551.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFH6_ECTSI1.460e-3066.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JA48_9PHAE3.170e-2580.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FTT9_ECTSI6.700e-1382.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig76contigC-linearis_contig76:74395..75877 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.1
Seed ortholog evalue3.5e-28
Seed eggNOG ortholog2880.D8LFH6
Hectar predicted targeting categoryother localisation
EggNOG OGs2BXB7@1,2S2EZ@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size1102
Cds size726
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig76.15154.1prot_C-linearis_contig76.15154.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig76 74771..75877 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930440.6527271-UTR-C-linearis_contig76:74394..747701622930440.6527271-UTR-C-linearis_contig76:74394..74770Chordaria linearis ClinC8C monoicousUTRC-linearis_contig76 74395..74770 +
1690881070.6667938-UTR-C-linearis_contig76:74394..747701690881070.6667938-UTR-C-linearis_contig76:74394..74770Chordaria linearis ClinC8C monoicousUTRC-linearis_contig76 74395..74770 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930440.6781375-CDS-C-linearis_contig76:74770..747851622930440.6781375-CDS-C-linearis_contig76:74770..74785Chordaria linearis ClinC8C monoicousCDSC-linearis_contig76 74771..74785 +
1690881070.6852188-CDS-C-linearis_contig76:74770..747851690881070.6852188-CDS-C-linearis_contig76:74770..74785Chordaria linearis ClinC8C monoicousCDSC-linearis_contig76 74771..74785 +
1622930440.7007525-CDS-C-linearis_contig76:74968..754091622930440.7007525-CDS-C-linearis_contig76:74968..75409Chordaria linearis ClinC8C monoicousCDSC-linearis_contig76 74969..75409 +
1690881070.697958-CDS-C-linearis_contig76:74968..754091690881070.697958-CDS-C-linearis_contig76:74968..75409Chordaria linearis ClinC8C monoicousCDSC-linearis_contig76 74969..75409 +
1622930440.7254436-CDS-C-linearis_contig76:75607..758771622930440.7254436-CDS-C-linearis_contig76:75607..75877Chordaria linearis ClinC8C monoicousCDSC-linearis_contig76 75608..75877 +
1690881070.7097127-CDS-C-linearis_contig76:75607..758771690881070.7097127-CDS-C-linearis_contig76:75607..75877Chordaria linearis ClinC8C monoicousCDSC-linearis_contig76 75608..75877 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig76.15154.1

>prot_C-linearis_contig76.15154.1 ID=prot_C-linearis_contig76.15154.1|Name=mRNA_C-linearis_contig76.15154.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=242bp
MTKMQEYAIPVAEADSDDDGAAAVTPGQGTDPEQPIPASGERGTVGVGAR
EEECTAPATAATGEKGRQAPPATPAPAAAPQGVGCISSSGGGGGGGGGGS
GTAIDGAMSVSAAGAAGARGVQVVSSSNLNLLATICLLEENVIGGGDGAN
HDETVPIEEVAPDLSQELEATQVTGTQPDEAVAAPASAQAVVETVTPGQD
TEREQPVPASEALVAGDVAVQAAGEADAGEVMPTSSELGGV*
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mRNA from alignment at C-linearis_contig76:74395..75877+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig76.15154.1 ID=mRNA_C-linearis_contig76.15154.1|Name=mRNA_C-linearis_contig76.15154.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1483bp|location=Sequence derived from alignment at C-linearis_contig76:74395..75877+ (Chordaria linearis ClinC8C monoicous)
GGCGAAGGAGAGGAGGGTGATGGGCGAGGCGAGGGGGACGATAGAGAGGA
AGTAGTAGAATACACGGTGCAAAAATTGGCAGTAGCGCGCGTAGAGGTGG
GAGGTGAAGCAGAACCAACAGAGTCGGCGGTCGACACAGCAGAGGCAACA
GCGGAATCATCAGCAGCATCGGTATTAGCGGCGGCATCATCGACAGCACC
GGTAGCGGCGGCATCATCAGCATCGGTAGCAGCAGCATCAGCGACACCAC
ACGGCGGCATTTCGTGGAGCAGTGGTGGAGAACGCGCAGGCCTCCTCGCG
CCCGTCGCCTGTTCGGGCACCGGAGCGGCGGCAAGCGGGGGTGGGCGCGG
TGGTGGGAGCGGGAGCGGATGTGACCATGACCAAGATGCAGGTGCAGCGA
TTCAAAAGCGCATGTGTCTGGAACTTGACTTATACCCTTTGCTCTAAGTA
AATGCTAGCACTGTGTGACCCGAGTTGATACCGCCACACGCTGCAGAGAT
GCATGTTGTCCGGACGTTCGTATCGACTGCTTTTCCCTGTCACGGGCCCA
CTCTTTTAACCACCGGTTCCATAGGAGTACGCCATTCCCGTGGCCGAAGC
GGATTCAGATGACGATGGTGCCGCCGCGGTGACGCCTGGACAAGGGACGG
ATCCTGAGCAGCCTATTCCGGCGAGCGGTGAACGAGGGACAGTCGGAGTT
GGAGCGAGAGAGGAAGAATGCACGGCGCCAGCAACGGCAGCGACGGGCGA
GAAGGGGAGGCAGGCACCACCAGCAACACCAGCACCAGCAGCGGCGCCAC
AAGGTGTTGGATGTATTTCGAGCAGCGGCGGCGGCGGTGGTGGTGGAGGC
GGCGGGAGCGGAACCGCAATAGACGGCGCGATGTCGGTGTCGGCAGCAGG
AGCAGCAGGAGCACGAGGCGTACAGGTGGTGTCATCCAGTAACCTAAATC
TCCTCGCCACCATCTGTCTGCTCGAGGAAAACGTGATTGGTGGCGGCGAT
GGAGCCAATCACGATGTGAGTGTTGATTTTCGAACCATGGCTGAATATGT
AGAAAAAAAGTGGGGGGATTGTTAAACCCTCCCCGTGTTAAGACATTATG
ACAGTCACCGCAGCCAGGCACACACATACAACATGTGATGCTGGAAATAA
GACTGATGCCCGTCCACCCTCCGATTTTCCCCGCTCCACCCTTTTGACCA
CTCGTTTCAATAGGAAACGGTTCCGATCGAAGAGGTTGCGCCGGACCTTT
CGCAAGAGCTCGAGGCCACACAGGTGACTGGCACTCAGCCAGACGAGGCA
GTGGCGGCGCCTGCATCTGCGCAGGCCGTGGTCGAGACGGTGACGCCTGG
ACAAGACACGGAGCGTGAGCAGCCTGTTCCGGCGAGTGAGGCCTTGGTGG
CAGGTGACGTGGCGGTGCAGGCAGCGGGAGAGGCCGATGCCGGCGAAGTG
ATGCCGACATCTAGCGAGTTGGGGGGGGTGTAG
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Coding sequence (CDS) from alignment at C-linearis_contig76:74395..75877+

>mRNA_C-linearis_contig76.15154.1 ID=mRNA_C-linearis_contig76.15154.1|Name=mRNA_C-linearis_contig76.15154.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1452bp|location=Sequence derived from alignment at C-linearis_contig76:74395..75877+ (Chordaria linearis ClinC8C monoicous)
ATGACCAAGATGCAGATGACCAAGATGCAGGAGTACGCCATTCCCGTGGC
CGAAGCGGATTCAGATGACGATGGTGCCGCCGCGGTGACGCCTGGACAAG
GGACGGATCCTGAGCAGCCTATTCCGGCGAGCGGTGAACGAGGGACAGTC
GGAGTTGGAGCGAGAGAGGAAGAATGCACGGCGCCAGCAACGGCAGCGAC
GGGCGAGAAGGGGAGGCAGGCACCACCAGCAACACCAGCACCAGCAGCGG
CGCCACAAGGTGTTGGATGTATTTCGAGCAGCGGCGGCGGCGGTGGTGGT
GGAGGCGGCGGGAGCGGAACCGCAATAGACGGCGCGATGTCGGTGTCGGC
AGCAGGAGCAGCAGGAGCACGAGGCGTACAGGTGGTGTCATCCAGTAACC
TAAATCTCCTCGCCACCATCTGTCTGCTCGAGGAAAACGTGATTGGTGGC
GGCGATGGAGCCAATCACGATGAGTACGCCATTCCCGTGGCCGAAGCGGA
TTCAGATGACGATGGTGCCGCCGCGGTGACGCCTGGACAAGGGACGGATC
CTGAGCAGCCTATTCCGGCGAGCGGTGAACGAGGGACAGTCGGAGTTGGA
GCGAGAGAGGAAGAATGCACGGCGCCAGCAACGGCAGCGACGGGCGAGAA
GGGGAGGCAGGCACCACCAGCAACACCAGCACCAGCAGCGGCGCCACAAG
GTGTTGGATGTATTTCGAGCAGCGGCGGCGGCGGTGGTGGTGGAGGCGGC
GGGAGCGGAACCGCAATAGACGGCGCGATGTCGGTGTCGGCAGCAGGAGC
AGCAGGAGCACGAGGCGTACAGGTGGTGTCATCCAGTAACCTAAATCTCC
TCGCCACCATCTGTCTGCTCGAGGAAAACGTGATTGGTGGCGGCGATGGA
GCCAATCACGATGAAACGGTTCCGATCGAAGAGGTTGCGCCGGACCTTTC
GCAAGAGCTCGAGGCCACACAGGTGACTGGCACTCAGCCAGACGAGGCAG
TGGCGGCGCCTGCATCTGCGCAGGCCGTGGTCGAGACGGTGACGCCTGGA
CAAGACACGGAGCGTGAGCAGCCTGTTCCGGCGAGTGAGGCCTTGGTGGC
AGGTGACGTGGCGGTGCAGGCAGCGGGAGAGGCCGATGCCGGCGAAGTGA
TGCCGACATCTAGCGAGTTGGGGGGGGTGTAGGAAACGGTTCCGATCGAA
GAGGTTGCGCCGGACCTTTCGCAAGAGCTCGAGGCCACACAGGTGACTGG
CACTCAGCCAGACGAGGCAGTGGCGGCGCCTGCATCTGCGCAGGCCGTGG
TCGAGACGGTGACGCCTGGACAAGACACGGAGCGTGAGCAGCCTGTTCCG
GCGAGTGAGGCCTTGGTGGCAGGTGACGTGGCGGTGCAGGCAGCGGGAGA
GGCCGATGCCGGCGAAGTGATGCCGACATCTAGCGAGTTGGGGGGGGTGT
AG
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