mRNA_C-linearis_contig75.15071.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig75.15071.1
Unique NamemRNA_C-linearis_contig75.15071.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig75.15071.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig75contigC-linearis_contig75:53595..54405 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-01_006890.1
Exons2
Model size543
Cds size540
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930422.2310293-CDS-C-linearis_contig75:53595..540031622930422.2310293-CDS-C-linearis_contig75:53595..54003Chordaria linearis ClinC8C monoicousCDSC-linearis_contig75 53596..54003 -
1690881061.7044945-CDS-C-linearis_contig75:53595..540031690881061.7044945-CDS-C-linearis_contig75:53595..54003Chordaria linearis ClinC8C monoicousCDSC-linearis_contig75 53596..54003 -
1622930422.2591648-CDS-C-linearis_contig75:54273..544051622930422.2591648-CDS-C-linearis_contig75:54273..54405Chordaria linearis ClinC8C monoicousCDSC-linearis_contig75 54274..54405 -
1690881061.7167962-CDS-C-linearis_contig75:54273..544051690881061.7167962-CDS-C-linearis_contig75:54273..54405Chordaria linearis ClinC8C monoicousCDSC-linearis_contig75 54274..54405 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig75.15071.1prot_C-linearis_contig75.15071.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig75 53596..54405 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig75.15071.1

>prot_C-linearis_contig75.15071.1 ID=prot_C-linearis_contig75.15071.1|Name=mRNA_C-linearis_contig75.15071.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=180bp
QNGDPSLSANFVFNEKRPFRKHSPMKKLLPNADFSPTDRRVSQKRLGTIH
GTKINTPNTTTTAAASIITNTTPDDGALISSLSSPMASTAARFLGEGRRS
CSGGGGGGGRRSLADKFSAPTPTEIDEVPPQSSSNKMKTITPGPGSSCHR
DEQQVQQQKQHQSWSSRAGDHGDLGDQNNR
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mRNA from alignment at C-linearis_contig75:53595..54405-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig75.15071.1 ID=mRNA_C-linearis_contig75.15071.1|Name=mRNA_C-linearis_contig75.15071.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=811bp|location=Sequence derived from alignment at C-linearis_contig75:53595..54405- (Chordaria linearis ClinC8C monoicous)
CAAAATGGGGACCCTTCGTTAAGTGCGAACTTCGTTTTCAACGAGAAGCG
GCCATTTAGGAAGCATTCGCCAATGAAGAAGCTTTTGCCGAACGCGGACT
TTTCGCCAACGGATCGTCGCGTCTCCCAGAAGGTAGCTACAGAACGAAAC
ATTTAGCGAGCAAAGGAGTGCTGCTGACACCCGCTCTCTAACCTTGATTT
CTCGTTCGAAGTTTGACAATCGAAGGCTTCAGCAGATATCAGACAGAGAG
GGGGGTGTCTCTCTGCCTAAATTTGTTGGGAAGTACTATTTCTACCATTC
ACGCTGCATTTTTGTATGTACAAGTATGACTATTCACGATGAGCCATGTA
ATCTTGATCCCTTCGCAACAATATCGTTTTCCATGTCCCCCCAAACGCGC
AGCGCCTAGGAACCATTCATGGCACCAAAATCAACACCCCCAACACCACT
ACAACCGCCGCTGCCAGCATCATCACCAACACGACACCAGACGACGGCGC
CTTGATTTCGTCATTGTCGTCGCCAATGGCATCAACGGCCGCACGTTTCC
TTGGTGAAGGCCGACGGTCCTGTTCCGGAGGCGGTGGAGGCGGTGGCCGA
CGATCGCTCGCCGACAAGTTTTCAGCACCGACACCGACGGAAATCGACGA
AGTCCCGCCTCAATCGAGCAGCAACAAGATGAAAACCATCACTCCTGGCC
CTGGTTCTTCGTGCCACCGAGACGAACAGCAAGTACAACAGCAGAAGCAG
CACCAGTCGTGGAGTAGCAGGGCTGGGGATCACGGAGATCTAGGGGACCA
GAACAACCGTC
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Coding sequence (CDS) from alignment at C-linearis_contig75:53595..54405-

>mRNA_C-linearis_contig75.15071.1 ID=mRNA_C-linearis_contig75.15071.1|Name=mRNA_C-linearis_contig75.15071.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1080bp|location=Sequence derived from alignment at C-linearis_contig75:53595..54405- (Chordaria linearis ClinC8C monoicous)
CAAAATGGGGACCCTTCGTTAAGTGCGAACTTCGTTTTCAACGAGAAGCG
GCCATTTAGGAAGCATTCGCCAATGAAGAAGCTTTTGCCGAACGCGGACT
TTTCGCCAACGGATCGTCGCGTCTCCCAGAAGCAAAATGGGGACCCTTCG
TTAAGTGCGAACTTCGTTTTCAACGAGAAGCGGCCATTTAGGAAGCATTC
GCCAATGAAGAAGCTTTTGCCGAACGCGGACTTTTCGCCAACGGATCGTC
GCGTCTCCCAGAAGCGCCTAGGAACCATTCATGGCACCAAAATCAACACC
CCCAACACCACTACAACCGCCGCTGCCAGCATCATCACCAACACGACACC
AGACGACGGCGCCTTGATTTCGTCATTGTCGTCGCCAATGGCATCAACGG
CCGCACGTTTCCTTGGTGAAGGCCGACGGTCCTGTTCCGGAGGCGGTGGA
GGCGGTGGCCGACGATCGCTCGCCGACAAGTTTTCAGCACCGACACCGAC
GGAAATCGACGAAGTCCCGCCTCAATCGAGCAGCAACAAGATGAAAACCA
TCACTCCTGGCCCTGGTTCTTCGTGCCACCGAGACGAACAGCAAGTACAA
CAGCAGAAGCAGCACCAGTCGTGGAGTAGCAGGGCTGGGGATCACGGAGA
TCTAGGGGACCAGAACAACCGTCGCCTAGGAACCATTCATGGCACCAAAA
TCAACACCCCCAACACCACTACAACCGCCGCTGCCAGCATCATCACCAAC
ACGACACCAGACGACGGCGCCTTGATTTCGTCATTGTCGTCGCCAATGGC
ATCAACGGCCGCACGTTTCCTTGGTGAAGGCCGACGGTCCTGTTCCGGAG
GCGGTGGAGGCGGTGGCCGACGATCGCTCGCCGACAAGTTTTCAGCACCG
ACACCGACGGAAATCGACGAAGTCCCGCCTCAATCGAGCAGCAACAAGAT
GAAAACCATCACTCCTGGCCCTGGTTCTTCGTGCCACCGAGACGAACAGC
AAGTACAACAGCAGAAGCAGCACCAGTCGTGGAGTAGCAGGGCTGGGGAT
CACGGAGATCTAGGGGACCAGAACAACCGT
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