mRNA_C-linearis_contig75.15070.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig75.15070.1
Unique NamemRNA_C-linearis_contig75.15070.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig75.15070.1 vs. uniprot
Match: A0A6H5KQV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQV0_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 1.080e-39
Identity = 120/305 (39.34%), Postives = 164/305 (53.77%), Query Frame = 3
Query:  360 LEISSIQGRMTPLHMAASGGRLETMSVLIEAGASVNSRRSNGAXXXXXXXXXXXXXXXXXXXXXKADQQLS-STHSGRP-FVPLDAAAQYGHPEVARELILQRGIEGCRGASGGLDALQLAARKQHVNLVAVLTDDGRRRG*HRCSPEKRC*IGREASVKFLLQQQRGR------AYVDSPGEIGATPLLDACGFARFHPPSGRIVRLLLDAGAD-------------DTFRDTPLAYATSFLRNTKDRGEEDATEDLLYRLKVIRRLLLRVEAVHAVSWLWQSDTP----ATVRAAGGVSTTMT 1199
            L+ ++ Q   TPL  AA  G   +++ L++AG+++N+RRS+GA                     KAD  L+ ++ SG+  F+PLD AAQ GH EV  ELI Q GI+GC G+SGG +AL+ AA    ++++A+LTD G        +       G EA +KFLL+Q RGR      AY+++   +G T LLD  G  R  P   R+V+LL++AGAD             D F  TPL      L     R  +  T +   +L+VIRRLLLR EAVHAVSWLW SDTP    AT +  G  + T T
Sbjct:  107 LDAATKQNHCTPLDCAAETGCAASVTALLKAGSNINTRRSDGATPLYTAAWNGNVVAVWLLLLAKADPLLTCASDSGKERFLPLDVAAQNGHREVVNELIRQVGIDGCGGSSGGENALRQAALFSRLDIMAILTDAGVVDT--GLALVVAAGYGGEAPLKFLLEQARGRKSTDRAAYMNTLNGVGLTSLLD--GIQRCRP---RVVQLLVEAGADTTSPVLICNQPGEDDFHITPLGLTMCLLGG---RSAKPLTMEEQNKLEVIRRLLLREEAVHAVSWLWPSDTPTITHATAKGTGRTTATST 401          
BLAST of mRNA_C-linearis_contig75.15070.1 vs. uniprot
Match: A0A6H5KJA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA9_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 3.560e-36
Identity = 115/303 (37.95%), Postives = 153/303 (50.50%), Query Frame = 3
Query:  459 SVNSRRSNGAXXXXXXXXXXXXXXXXXXXXXKADQQLSSTH--SGRPFVPLDAAAQYGHPEVARELILQRGIEGCRGASGGLDALQLAARKQHVNLVAVLT-----DDGRRRG*HRCSPEKRC*IGREASVKFLLQQQRGR------AYVDSPGEIGATPLLDACGFARFHPPSGRIVRLLLDAGAD-------------DTFRDTPLAYATSFLRN-TKDRGEEDATEDLLYRLKVIRRLLLRVEAVHAVSWLWQSDTPATVRAAGGVSTTMTKNQEAWYAVGDCVQVVTLKPRSYVRNEHV 1286
            ++NSRRS+GA                     KAD  L++    SGR F+PLDAAA+ GHPEV  ELI Q GI+GC G+SGG+ ALQ AA+ +++N++ +LT     D G        +       G E  +KFLL+Q R R      AYV++    G TPLL   G   + P   R+VRLL++AGAD             D    TPL    + +R+  K  G   A+ + L++L+ IRRLLLRVEAVHAVSWLW SD     RAA        +  +   A+   V +  L  R   R   V
Sbjct:  140 NLNSRRSDGATPLYTAAWKGNVDAARLLLLAKADPLLTTVPDPSGRTFLPLDAAAENGHPEVVNELIRQVGIDGCGGSSGGVRALQQAAQFKNLNIMVILTNAGVVDTG-------LALVVAAGYGGETPLKFLLEQARARKTMDEAAYVNTRDRGGVTPLL--WGIQHYRP---RVVRLLVEAGADTTSPVAVRNQLGGDDVSITPLGLTMNPVRDKVKVVGRGPASPEQLHKLEAIRRLLLRVEAVHAVSWLWPSDISTITRAAA-------RGTDRTTAISTAVTLPMLVTRRRARGRKV 423          
BLAST of mRNA_C-linearis_contig75.15070.1 vs. uniprot
Match: D7FXY7_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXY7_ECTSI)

HSP 1 Score: 140 bits (352), Expect = 1.180e-32
Identity = 117/335 (34.93%), Postives = 156/335 (46.57%), Query Frame = 3
Query:  360 LEISSIQGRMTPLHMAASGGRLETMSVLIEAGASVNSRRSNGAXXXXXXXXXXXXXXXXXXXXXKADQQLSSTHSG---RPFVPLDAAAQYGHPEVARELILQRGIEGCRGASGGLDALQLAARKQHVNLVAVLT-----DDGRRRG*HRCSPEKRC*IGREASVKFLLQQQRGR------AYVDSPGEIGATPLLDACGFARFHPPSGRIVRLLLDAGADDTF-----------RDTPLAYATSFLRNTKDRGEEDATEDLLYRLKVIRRLLLRVEAVHAVSWLWQSDT-PATVRAAGGVSTTMTKNQEAWYAVGDCVQVVTLKPRSYVRNEHV 1286
            LE+++ Q   TPL +AA  G   +M+ L+EAGA++NSRR +GA                     K D  L+  H G   R  +PLD AA  GH EV  ELI Q GI GC G+SGG+ ALQ AAR +H++++ VLT     D G  RG           I R   ++  +   +G          + P       +  AC   R  P   R+VRLL++AGAD T              TP+      L    D G E  TE+ L  L+ I RLLLRVEA+HAVSWLW SD    T   A G   T +K+            V+T++ R+  +   V
Sbjct:    9 LEVATKQQLCTPLQIAAVNGCAASMTTLLEAGANLNSRRFDGATPLFLAAWEGNVDAVRLLLLAKVDPLLTP-HLGTSERASLPLDVAAGLGHLEVVNELIRQVGIGGCGGSSGGVRALQQAARNKHLDMLTVLTNAGVVDTGLARGRR---------IWRRGPLEVSVGAGKGEENHGWTCVCEHPQRCRFDAI--ACWHQRCRP---RVVRLLVEAGADTTSTVPIDGLPGTDNITPMGLTMLLLH---DLGTEPLTEEQLNALEAIHRLLLRVEALHAVSWLWSSDICNCTYSTAQGTDRTTSKS------TAGTPLVLTMRQRARSKEREV 319          
BLAST of mRNA_C-linearis_contig75.15070.1 vs. uniprot
Match: D7G1H7_ECTSI (EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1H7_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 1.420e-30
Identity = 99/236 (41.95%), Postives = 132/236 (55.93%), Query Frame = 3
Query:  552 KADQQLSS-THSGRPFVPLDAAAQYGHPEVARELILQRGIEGCRGASGGLDALQLAARKQHVNLVAVLTDDGRRRG*HRCSPEK--RC*IGREASVKFLLQQQRGRA--YVDSPGE-IGATPLLDACGFARFHPPSGRIVRLLLDAGADDT--------------FRDTPLAYATSFLRNTKDRGEEDATEDLLYRLKVIRRLLLRVEAVHAVSWLWQSDTPATVRAAGGVSTTMT 1199
            KA+  L S T  G  +VPL+ AA +G+P+VARE+I Q GI GC G SGG++AL+ AA ++H+  +AVL D G   G     P        GR  +VKFLL++++  A  YV+   +  G TP++ A         S +IVRLL+DAGA+ T                +TPLA+ T  LR  +  GE  AT++ L RLK  R LL R EAVHAVSWLW S  P  +  A G + T T
Sbjct:  168 KANPLLCSHTPMGVSYVPLEMAALHGNPDVAREMIRQVGIRGCGGPSGGVEALRQAADEEHLEFMAVLLDAG---GVVDTGPALILAAENGRAVAVKFLLRRRQADADAYVNGTRDPYGRTPVMCAVDVGAGRLCSPKIVRLLVDAGANTTRAVGVTRITPRWEKTSETPLAFTTRLLREGRVDGEA-ATKEQLQRLKDTRCLLSRAEAVHAVSWLWASGEPPRIAQAAGDTKTET 399          
BLAST of mRNA_C-linearis_contig75.15070.1 vs. uniprot
Match: D7FVK3_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVK3_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 2.310e-29
Identity = 98/242 (40.50%), Postives = 126/242 (52.07%), Query Frame = 3
Query:  552 KADQQLSSTHSGRPFVPLDAAAQYGHPEVARELILQRGIEGCRGASGGLDALQLAARKQHVNLVAVLT-----DDGRRRG*HRCSPEKRC*IGREASVKFLLQQQRGR-----AYVDSPGE-IGATPLLDACGFARFHPPSGRIVRLLLDAGADDT-------------FRDTPLAYATSFLRNTKDRGEEDATEDLLYRLKVIRRLLLRVEAVHAVSWLWQSDTPATVRAAGGVSTTMTKN 1205
            KA+  L+  +     +PLD AAQ G   V  EL+ + GI GC G +GG+ ALQLAA K H++++  LT     D G        +  K    G    VKFLLQQQ G      AYV  P +  G TPL+           S ++VRLL+DAGAD T                TPL+ AT  LR  K    +   ++LL RL++IRRLLLRVEAVHA SWLWQ+  P     AGG + T T++
Sbjct:  170 KANPLLTRVNLAWQHLPLDTAAQNGRLGVVLELLQRFGIRGCGGGTGGVTALQLAAMKPHMDVMLALTTAGVVDTG-------IALVKATSFGHMDVVKFLLQQQNGTPSEKSAYVSRPRDPCGRTPLICNIDVGLNQSCSPKVVRLLVDAGADTTSIVRFTIQPGTLPVVCTPLSLATEALR-IKIAYRKAIPDELLRRLELIRRLLLRVEAVHATSWLWQNGVPRVGLPAGGTAATETES 403          
BLAST of mRNA_C-linearis_contig75.15070.1 vs. uniprot
Match: A0A6H5JMS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMS6_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 6.330e-29
Identity = 107/308 (34.74%), Postives = 139/308 (45.13%), Query Frame = 3
Query:  360 LEISSIQGRMTPLHMAASGGRLETMSVLIEAGASVNSRRSNGAXXXXXXXXXXXXXXXXXXXXXKADQQLSSTHSGRPFVPLDAAAQYGHPEVARELILQRGIEGCRGASGGLDALQLAARKQHVNLVAVLTDDGRRRG*HRCSPEKRC*IGREASVKFLLQQQRGRAYVDSPGEIGATPLLDACGFARFHPPSGRIVRLLLDAGADDTFRDTPLAYATSFLRNTKDRGEEDATEDLLYRLKVIRRLLLRVEAVHAVSWLWQSDTPA-TVRAAGGVSTTMTKNQEAWYAVGDCVQVVTLKPRSYVRNE 1280
            LE+++ Q   TPLH+AA  G   +   +++AGA+ NSRR +GA                                 R  +P D A   GH EV  ELI Q GI GC G+SGG+ ALQ AAR + ++++ VLT  G           +    G  A +KFLL+Q R R  +  P +  A P L  C      P   R  R    A    T     +      LR   D G E  TE+ L  L+ IRRLLLRVEAVHAVSWLW SD    T   A G   T +K+            V+T++ R+  R E
Sbjct:    9 LEVATKQQLCTPLHVAAVNGCAASTRTMLKAGANPNSRRFDGASRYFWRRGKGRWM--------------------RTSLPFDVAVDLGHLEVVNELIRQVGIGGCGGSSGGVRALQQAARNKPLDMLTVLTSAG---VVDTGLALRAAAFGGVAPLKFLLEQARARKTMGGPAD--AAPELCGC---LSKPERTRHPRFQSTAYLVRTTSHPCMGLTMLLLR---DLGTEPLTEEQLNALEAIRRLLLRVEAVHAVSWLWSSDISTFTYSTAQGTGRTTSKSTPG------TPLVLTMRQRARSRRE 279          
BLAST of mRNA_C-linearis_contig75.15070.1 vs. uniprot
Match: D7FT11_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT11_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 7.300e-29
Identity = 91/215 (42.33%), Postives = 120/215 (55.81%), Query Frame = 3
Query:  597 VPLDAAAQYGHPEVARELILQRGIEGCRGASGGLDALQLAARKQHVNLVAVLTDDG---RRRG*HRCSPEKRC*IGREASVKFLLQQQRGR-------AYVDSPGEIGATPLLDACGFARFHPPSGRIVRLLLDAGADDT-------------FRDTPLAYATSFLRNTKDRGEEDATEDLLYRLKVIRRLLLRVEAVHAVSWLWQSDTPATVRA 1172
            VPLD AA++GH +V RELI + GIEGC   S G  AL  AA  QH++++A+LT+ G     +  +  +      +G EASVKFLL+ +          AY+++    G TPL+  C    F   + RIVR+L+DAGAD T             F DTPLA+    LR       + AT++ L RL+ I RLLLRV+AVHAVSWLW S  P   RA
Sbjct:  280 VPLDLAAKHGHTDVVRELIQELGIEGCDATSAGAHALAFAASNQHLDIMAILTEAGVVDTGKALYLAAG-----MGHEASVKFLLRHRHKEGGCGVEGAYLNARDVNGYTPLV-VCTQGCFSQ-APRIVRMLVDAGADTTSPVQVMNLKGGVVFNDTPLAFTKLRLRKKIVADGKPATKEHLQRLEAICRLLLRVDAVHAVSWLWPSGAPFIGRA 487          
BLAST of mRNA_C-linearis_contig75.15070.1 vs. uniprot
Match: A0A6H5KSA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSA9_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 9.670e-28
Identity = 90/216 (41.67%), Postives = 117/216 (54.17%), Query Frame = 3
Query:  585 GRPFVPLDAAAQYGHPEVARELILQRGIEGCRGASGGLDALQLAARKQHVNLVAVLTDDGR-RRG*HRCSPEKRC*IGREASVKFLLQQQRGR-----AYVDSPGEIGATPLLDACGFARFHPPSGRIVRLLLDAGADDT-------------FRDTPLAYATSFLRNTKDRGEEDATEDLLYRLKVIRRLLLRVEAVHAVSWLWQSDTPATVRAA 1175
            GR  +PLDAA    H  V R+LI Q GI+GC GAS G DA + A + Q  ++V +L D G    G       K    G EA VK LLQQQRG+      YV+     G TP++   G A     S R++RL LDAGAD               FR TPLAY T  LR+ + RG  D+T+     L+ +RR+LL++EA+ AVSW WQSD  +++  A
Sbjct:  344 GRIILPLDAAVISKHAAVVRKLIQQLGIQGCGGASAGADASRWAVQTQQYDIVVMLADTGEIDTGRVLIDAAK---FGSEALVKILLQQQRGKHMDWDTYVNKKQPDGRTPVVCRIGRA-LRSGSPRVLRLFLDAGADTASTVRITNKEGVQLFRGTPLAYTTWLLRDQQARGI-DSTKGEPCSLEAVRRMLLQLEAIRAVSWCWQSDALSSIERA 554          
BLAST of mRNA_C-linearis_contig75.15070.1 vs. uniprot
Match: D7FVU3_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVU3_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 1.100e-27
Identity = 94/230 (40.87%), Postives = 123/230 (53.48%), Query Frame = 3
Query:  570 SSTHSGRPFVPLDAAAQYGHPEVARELILQRGIEGCRGASGGLDALQLAARKQHVNLVAVLTDDGRRRG*HRCSPEKRC*I-----GREASVKFLLQQQRGR---AYVD-SPGEIGATPLLDACGFARFHPPSGRIVRLLLDAGADDT-------------FRDTPLAYATSF-LRNTKDRGEEDATEDLLYRLKVIRRLLLRVEAVHAVSWLWQSDTPATVRAAGGVST 1190
            SS  SGR FVPL+ AAQ G   V  EL+ + GI  C G SGGLDAL++AA    V+++++L D G         P     +     G+EA+V FLL+QQ  R   +YV+ +  + G T LL +    +  P + RI R L+DAGAD T                TPL Y   + LR T   G+  AT++ L RL+  RR+LLRV AVHAVSW+W SD P   R A    T
Sbjct:  149 SSESSGRSFVPLEVAAQTGRSAVVSELLREFGIRCCGGPSGGLDALRVAAVYGQVDIMSMLMDAG------VVDPVGLALLAAVGSGKEAAVGFLLRQQEERWQTSYVNIARDDDGLTALLWSFRGNKNKPCNPRITRRLVDAGADTTSAVQLRAKRSRTCVNVTPLEYVNDWALRETN--GDHPATDEQLLRLEATRRVLLRVVAVHAVSWIWPSDAPLLARPANSPRT 370          
BLAST of mRNA_C-linearis_contig75.15070.1 vs. uniprot
Match: D8LL76_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL76_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 9.370e-27
Identity = 92/204 (45.10%), Postives = 114/204 (55.88%), Query Frame = 3
Query:  582 SGRPFVPLDAAAQYGHPEVARELILQRGIEGCRGASGGLDALQLAARKQHVNLVAVLTDDGRRRG*HRCSPEKRC*IGREASVKFLLQQQ-RGRA---YVDSPGE-IGATPLLDACGFARFHPPSGRIVRLLLDAGADDTF------------RDTPLAYATSFLRNTKDRGEEDATEDLLYRLKVIRRLLLRVEAVHAVSWLW 1142
            SG  FVPLD AA  GH  VAREL+ + GI GC GAS G+DAL  AA  QH++++A+L D G     +         +GRE ++KFLL+Q+  G A   Y  +P +  G TPLL A       P S R+VRLL+DAGAD T             + TPL  AT  L   K   E+ AT   L  L+  RRLLL+VE VHA SWLW
Sbjct:  178 SGNTFVPLDGAALNGHLAVARELVQRFGIRGCAGASAGVDALGQAAVDQHLDVMALLCDAGVVDTGNALVAT--VFLGRERALKFLLEQKGEGTARTTYASTPRDGRGHTPLLSA---VTTGPCSPRVVRLLVDAGADATLAVRVPDGFGRSTKYTPLDCATRCLAE-KVVDEDFATAQQLRNLRASRRLLLQVEVVHATSWLW 375          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig75.15070.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KQV0_9PHAE1.080e-3939.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJA9_9PHAE3.560e-3637.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXY7_ECTSI1.180e-3234.93EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7G1H7_ECTSI1.420e-3041.95EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1... [more]
D7FVK3_ECTSI2.310e-2940.50EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JMS6_9PHAE6.330e-2934.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FT11_ECTSI7.300e-2942.33EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5KSA9_9PHAE9.670e-2841.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVU3_ECTSI1.100e-2740.87EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D8LL76_ECTSI9.370e-2745.10EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig75contigC-linearis_contig75:47361..50376 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.4
Seed ortholog evalue1.6e-16
Seed eggNOG ortholog2880.D7FXY7
KEGG koko:K10334
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG0504@2759
Ec32 ortholog descriptionEsV-1-199
Ec32 orthologEc-27_005370.1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Exons1
Model size3016
Cds size393
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig75.15070.1prot_C-linearis_contig75.15070.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig75 47747..48139 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930425.1594403-UTR-C-linearis_contig75:47360..477461622930425.1594403-UTR-C-linearis_contig75:47360..47746Chordaria linearis ClinC8C monoicousUTRC-linearis_contig75 47361..47746 +
1690881062.9450686-UTR-C-linearis_contig75:47360..477461690881062.9450686-UTR-C-linearis_contig75:47360..47746Chordaria linearis ClinC8C monoicousUTRC-linearis_contig75 47361..47746 +
1622930425.202519-UTR-C-linearis_contig75:48139..503761622930425.202519-UTR-C-linearis_contig75:48139..50376Chordaria linearis ClinC8C monoicousUTRC-linearis_contig75 48140..50376 +
1690881062.9670744-UTR-C-linearis_contig75:48139..503761690881062.9670744-UTR-C-linearis_contig75:48139..50376Chordaria linearis ClinC8C monoicousUTRC-linearis_contig75 48140..50376 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930425.1773975-CDS-C-linearis_contig75:47746..481391622930425.1773975-CDS-C-linearis_contig75:47746..48139Chordaria linearis ClinC8C monoicousCDSC-linearis_contig75 47747..48139 +
1690881062.9568424-CDS-C-linearis_contig75:47746..481391690881062.9568424-CDS-C-linearis_contig75:47746..48139Chordaria linearis ClinC8C monoicousCDSC-linearis_contig75 47747..48139 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig75.15070.1

>prot_C-linearis_contig75.15070.1 ID=prot_C-linearis_contig75.15070.1|Name=mRNA_C-linearis_contig75.15070.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=131bp
MTPLHMAASGGRLETMSVLIEAGASVNSRRSNGATPIHVAAQEGKVDAMK
MLLRAKADQQLSSTHSGRPFVPLDAAAQYGHPEVARELILQRGIEGCRGA
SGGLDALQLAARKQHVNLVAVLTDDGRRRG*
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mRNA from alignment at C-linearis_contig75:47361..50376+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig75.15070.1 ID=mRNA_C-linearis_contig75.15070.1|Name=mRNA_C-linearis_contig75.15070.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3016bp|location=Sequence derived from alignment at C-linearis_contig75:47361..50376+ (Chordaria linearis ClinC8C monoicous)
ACGGTGGTGGGCCCCCGTGCAGCGCAACAGCGCACCCAGCAAACGTCGAT AGCTGTCTGCTCCATTAGCGCCTCGATGCCTCGGGGTCCGATGACCGAGC TGCACTCTGCCGCACATCATGGTTCTACCGAACGTACGACAGCCCTTCTC TCGAACGGGTCCATTGACATCGATCAGGGCGATTCGGAGGGCTGGACACC CCTCATGTACGCTGCCGGCGGCGGTCACTCCCGGATTGCTAGGATCCTGT TGAACAAGGGAGCAAGCGCACCAGAAGTGGCTGATGGCGGTTTTACAGCT CTTTTCATCGCGGTTGAACAAGGATATCTGGCGATAACCAAGCTACTGGT CAGTGCTGCCTAGAAATATCGTCGATACAGGGGCGCATGACACCGCTTCA TATGGCTGCGAGTGGAGGGCGCTTGGAAACGATGAGTGTGCTGATCGAGG CTGGTGCCAGTGTTAACAGCCGTAGATCGAATGGAGCGACACCTATACAC GTGGCGGCTCAGGAAGGGAAAGTTGATGCTATGAAGATGCTCCTCCGTGC GAAAGCGGACCAGCAGCTGAGCAGCACGCACTCGGGGCGACCTTTCGTCC CCTTGGACGCGGCGGCACAATACGGGCACCCGGAAGTGGCCCGCGAGCTG ATTCTGCAGCGTGGAATCGAAGGATGTAGGGGCGCAAGCGGCGGTCTAGA TGCTCTCCAACTGGCCGCCCGGAAGCAGCATGTAAACCTCGTGGCCGTGT TGACGGACGACGGACGCCGGCGTGGTTGACACCGGTGCAGCCCTGAGAAG CGCTGTTGAATTGGCCGCGAGGCATCCGTGAAGTTCCTTCTGCAGCAGCA ACGTGGACGTGCTTACGTGGACTCCCCAGGCGAAATTGGCGCAACACCCT TGCTCGATGCTTGTGGCTTTGCCAGGTTTCATCCACCGTCTGGCAGGATC GTGCGGTTGCTACTTGACGCTGGGGCCGACGATACATTTAGAGACACGCC CCTGGCTTATGCGACCAGTTTTCTCCGCAATACAAAAGACAGGGGCGAGG AAGACGCCACAGAGGATCTGTTGTACAGGCTGAAAGTCATCCGGCGGTTG CTGTTGAGGGTTGAGGCCGTTCATGCGGTCTCCTGGCTGTGGCAGAGCGA CACCCCCGCCACTGTCCGTGCCGCGGGGGGTGTAAGTACGACCATGACGA AGAACCAGGAGGCGTGGTATGCCGTTGGCGACTGTGTTCAGGTGGTGACT TTGAAACCACGATCGTACGTACGAAACGAGCACGTCTGTGTTTGCTCCAC GTGCTTTGTTGCGAGTGCTTTTCGTCTGTGAGTTTACTGTATACCTGGTA ACGTTGATTGCTTTTGTCGGTGCGTCATTCGGCTGCCGCTACCACTGATG CCGAGTCTTTTGGCCCCCTGTTTTTGGTCACGAGATGCATTGCCTGAAGC GCCATCGTCGCCTTGACTCGCGGTGCCGTCTGTCTGTTATTTTCGCCAAA CAAACTCAGAGGTTGGACCACCTCGCCGGAACGTGTTGAAATAGGCCAGT TGTTCGAGTTTTTTTCGAAGCAAGTGCAAATGTCTGTTTTCATGTGCCAG CTGCTGCGATCTCTTTGGAGGCAAAGGAGCATCGACAGCACGCACTCGAC CTTGCCACCGTTGTCTGTCTCGCTTGTTTTTTTGCGTCGTGTTTACGTTT GCAGACATTCCCAGAAAAGGACTCGATCGGGACCGGCTCGCGTAGCGTAG AGAGCGGCGGTGTGGTTTGCCGTTTGCTTTCTGGGCGGAGCGGCGTATGG GGCACTAATCTGGATTCTACCGCGACTTGTTGAAAAGAGGTTGTCTTTGG GTGAACTCCTCGTGTACTGCTGACTCACTCCGAACGCAAGTTTGGTGTTT CGTGAACGCCCAACTGATGGCATTCTTATCGGAAAATGGTAGATACAGAG TTTGTTCTGTACAGGATTACGTTTCGCCGGCAATGGCAGTTTTTGAGGCT GGCATATGGTGGGGAGCATTGCTTTCTTGGGCGGCATGCTTGGCAAGCAC AGGACGAGGTCTTCACCTGGCAGTAAGCCTTGATATGAGCATTACATGTG GTGACCTGGGTATTTTTTTCTCTACATAGCCTTGTGAGCAATTATTCAAA TCACTGCTTTGTCTGAGTGTATATTCGAAACATTATTGGATCTCCGAAAA GCGTGGATTTGGGTTTCTGATGCCGTGTCTTTGGAGGTCAGGTTCGTACT ATCCTCATTTTTGGCGGTCGATAGAAACGCGACATGTTGGTTTGCGAACA CAAATCCCGATGACGAACCCGAACTCTCATCGCTTTCGCCAACTGGTTTA TGTCTGTCCCGTGTCGCGCTCTGTCCAACACAAGTCAATCAGGATGATAC CTCCTGGAGGCTGTTGTCTAGACGTGTTATAGTGGACAGAGTGCTTACCA CATGGAGACGGGCAGATGTTTCTTCCGTTCTGATGTGGCGAGGAAGTACC GAGCGTGATCGAGCAAACTCGTTCCCGCTCATGGTGAGGTATACTAGAAG GAGGGCGGGAGGGGGCGTCTTGGACCCAGTGTTCCAGCTCTTGATCGATC CAAAGTTTGCAGGCGAGGATCAACTCTTGCGGATGTCTCGGAAACACGGC GACAACATTGTAGTCTCTAGTGTATCCGGATACCCTACTTTAATGTGTGT ATCTGTAGTTGCAGGAAGGTGTCATGTACCTGACCTCGGCGTATCATGGA TCACCAAAATATGTTTTTTTAGTATTTTTGCCCTAGTTTAGGTTTGGTGA AACCAATGTGAAGGTTGTGACAGCATTGATTGGAGGATGTACTGAGTGCG GAGTAGTACTATTCGCTGTTCCATGCGGGTGAATCATTGGGAGTAAAGAC AACATTATGACAGAGACGAAAGACTAGCGGTGTCGACGCGTGTCGACCAA GCTACAGCACCTTCAACTTTGATGTGGTATTTTTCGAAGAGAAATCAGGA CATGAATAAAACACGC
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Coding sequence (CDS) from alignment at C-linearis_contig75:47361..50376+

>mRNA_C-linearis_contig75.15070.1 ID=mRNA_C-linearis_contig75.15070.1|Name=mRNA_C-linearis_contig75.15070.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=786bp|location=Sequence derived from alignment at C-linearis_contig75:47361..50376+ (Chordaria linearis ClinC8C monoicous)
ATGACACCGCTTCATATGGCTGCGAGTGGAGGGCGCTTGGAAACGATGAG
TGTGCTGATCGAGGCTGGTGCCAGTGTTAACAGCCGTAGATCGAATGGAG
CGACACCTATACACGTGGCGGCTCAGGAAGGGAAAGTTGATGCTATGAAG
ATGCTCCTCCGTGCGAAAGCGGACCAGCAGCTGAGCAGCACGCACTCGGG
GCGACCTTTCGTCCCCTTGGACGCGGCGGCACAATACGGGCACCCGGAAG
TGGCCCGCGAGCTGATTCTGCAGCGTGGAATCGAAGGATGTAGGGGCGCA
AGCGGCGGTCTAGATGCTCTCCAACTGGCCGCCCGGAAGCAGCATGTAAA
CCTCGTGGCCGTGTTGACGGACGACGGACGCCGGCGTGGTTGAATGACAC
CGCTTCATATGGCTGCGAGTGGAGGGCGCTTGGAAACGATGAGTGTGCTG
ATCGAGGCTGGTGCCAGTGTTAACAGCCGTAGATCGAATGGAGCGACACC
TATACACGTGGCGGCTCAGGAAGGGAAAGTTGATGCTATGAAGATGCTCC
TCCGTGCGAAAGCGGACCAGCAGCTGAGCAGCACGCACTCGGGGCGACCT
TTCGTCCCCTTGGACGCGGCGGCACAATACGGGCACCCGGAAGTGGCCCG
CGAGCTGATTCTGCAGCGTGGAATCGAAGGATGTAGGGGCGCAAGCGGCG
GTCTAGATGCTCTCCAACTGGCCGCCCGGAAGCAGCATGTAAACCTCGTG
GCCGTGTTGACGGACGACGGACGCCGGCGTGGTTGA
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