mRNA_C-linearis_contig75.15070.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig75.15070.1 vs. uniprot
Match: A0A6H5KQV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQV0_9PHAE) HSP 1 Score: 164 bits (414), Expect = 1.080e-39 Identity = 120/305 (39.34%), Postives = 164/305 (53.77%), Query Frame = 3
Query: 360 LEISSIQGRMTPLHMAASGGRLETMSVLIEAGASVNSRRSNGAXXXXXXXXXXXXXXXXXXXXXKADQQLS-STHSGRP-FVPLDAAAQYGHPEVARELILQRGIEGCRGASGGLDALQLAARKQHVNLVAVLTDDGRRRG*HRCSPEKRC*IGREASVKFLLQQQRGR------AYVDSPGEIGATPLLDACGFARFHPPSGRIVRLLLDAGAD-------------DTFRDTPLAYATSFLRNTKDRGEEDATEDLLYRLKVIRRLLLRVEAVHAVSWLWQSDTP----ATVRAAGGVSTTMT 1199
L+ ++ Q TPL AA G +++ L++AG+++N+RRS+GA KAD L+ ++ SG+ F+PLD AAQ GH EV ELI Q GI+GC G+SGG +AL+ AA ++++A+LTD G + G EA +KFLL+Q RGR AY+++ +G T LLD G R P R+V+LL++AGAD D F TPL L R + T + +L+VIRRLLLR EAVHAVSWLW SDTP AT + G + T T
Sbjct: 107 LDAATKQNHCTPLDCAAETGCAASVTALLKAGSNINTRRSDGATPLYTAAWNGNVVAVWLLLLAKADPLLTCASDSGKERFLPLDVAAQNGHREVVNELIRQVGIDGCGGSSGGENALRQAALFSRLDIMAILTDAGVVDT--GLALVVAAGYGGEAPLKFLLEQARGRKSTDRAAYMNTLNGVGLTSLLD--GIQRCRP---RVVQLLVEAGADTTSPVLICNQPGEDDFHITPLGLTMCLLGG---RSAKPLTMEEQNKLEVIRRLLLREEAVHAVSWLWPSDTPTITHATAKGTGRTTATST 401
BLAST of mRNA_C-linearis_contig75.15070.1 vs. uniprot
Match: A0A6H5KJA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA9_9PHAE) HSP 1 Score: 153 bits (386), Expect = 3.560e-36 Identity = 115/303 (37.95%), Postives = 153/303 (50.50%), Query Frame = 3
Query: 459 SVNSRRSNGAXXXXXXXXXXXXXXXXXXXXXKADQQLSSTH--SGRPFVPLDAAAQYGHPEVARELILQRGIEGCRGASGGLDALQLAARKQHVNLVAVLT-----DDGRRRG*HRCSPEKRC*IGREASVKFLLQQQRGR------AYVDSPGEIGATPLLDACGFARFHPPSGRIVRLLLDAGAD-------------DTFRDTPLAYATSFLRN-TKDRGEEDATEDLLYRLKVIRRLLLRVEAVHAVSWLWQSDTPATVRAAGGVSTTMTKNQEAWYAVGDCVQVVTLKPRSYVRNEHV 1286
++NSRRS+GA KAD L++ SGR F+PLDAAA+ GHPEV ELI Q GI+GC G+SGG+ ALQ AA+ +++N++ +LT D G + G E +KFLL+Q R R AYV++ G TPLL G + P R+VRLL++AGAD D TPL + +R+ K G A+ + L++L+ IRRLLLRVEAVHAVSWLW SD RAA + + A+ V + L R R V
Sbjct: 140 NLNSRRSDGATPLYTAAWKGNVDAARLLLLAKADPLLTTVPDPSGRTFLPLDAAAENGHPEVVNELIRQVGIDGCGGSSGGVRALQQAAQFKNLNIMVILTNAGVVDTG-------LALVVAAGYGGETPLKFLLEQARARKTMDEAAYVNTRDRGGVTPLL--WGIQHYRP---RVVRLLVEAGADTTSPVAVRNQLGGDDVSITPLGLTMNPVRDKVKVVGRGPASPEQLHKLEAIRRLLLRVEAVHAVSWLWPSDISTITRAAA-------RGTDRTTAISTAVTLPMLVTRRRARGRKV 423
BLAST of mRNA_C-linearis_contig75.15070.1 vs. uniprot
Match: D7FXY7_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXY7_ECTSI) HSP 1 Score: 140 bits (352), Expect = 1.180e-32 Identity = 117/335 (34.93%), Postives = 156/335 (46.57%), Query Frame = 3
Query: 360 LEISSIQGRMTPLHMAASGGRLETMSVLIEAGASVNSRRSNGAXXXXXXXXXXXXXXXXXXXXXKADQQLSSTHSG---RPFVPLDAAAQYGHPEVARELILQRGIEGCRGASGGLDALQLAARKQHVNLVAVLT-----DDGRRRG*HRCSPEKRC*IGREASVKFLLQQQRGR------AYVDSPGEIGATPLLDACGFARFHPPSGRIVRLLLDAGADDTF-----------RDTPLAYATSFLRNTKDRGEEDATEDLLYRLKVIRRLLLRVEAVHAVSWLWQSDT-PATVRAAGGVSTTMTKNQEAWYAVGDCVQVVTLKPRSYVRNEHV 1286
LE+++ Q TPL +AA G +M+ L+EAGA++NSRR +GA K D L+ H G R +PLD AA GH EV ELI Q GI GC G+SGG+ ALQ AAR +H++++ VLT D G RG I R ++ + +G + P + AC R P R+VRLL++AGAD T TP+ L D G E TE+ L L+ I RLLLRVEA+HAVSWLW SD T A G T +K+ V+T++ R+ + V
Sbjct: 9 LEVATKQQLCTPLQIAAVNGCAASMTTLLEAGANLNSRRFDGATPLFLAAWEGNVDAVRLLLLAKVDPLLTP-HLGTSERASLPLDVAAGLGHLEVVNELIRQVGIGGCGGSSGGVRALQQAARNKHLDMLTVLTNAGVVDTGLARGRR---------IWRRGPLEVSVGAGKGEENHGWTCVCEHPQRCRFDAI--ACWHQRCRP---RVVRLLVEAGADTTSTVPIDGLPGTDNITPMGLTMLLLH---DLGTEPLTEEQLNALEAIHRLLLRVEALHAVSWLWSSDICNCTYSTAQGTDRTTSKS------TAGTPLVLTMRQRARSKEREV 319
BLAST of mRNA_C-linearis_contig75.15070.1 vs. uniprot
Match: D7G1H7_ECTSI (EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1H7_ECTSI) HSP 1 Score: 136 bits (343), Expect = 1.420e-30 Identity = 99/236 (41.95%), Postives = 132/236 (55.93%), Query Frame = 3
Query: 552 KADQQLSS-THSGRPFVPLDAAAQYGHPEVARELILQRGIEGCRGASGGLDALQLAARKQHVNLVAVLTDDGRRRG*HRCSPEK--RC*IGREASVKFLLQQQRGRA--YVDSPGE-IGATPLLDACGFARFHPPSGRIVRLLLDAGADDT--------------FRDTPLAYATSFLRNTKDRGEEDATEDLLYRLKVIRRLLLRVEAVHAVSWLWQSDTPATVRAAGGVSTTMT 1199
KA+ L S T G +VPL+ AA +G+P+VARE+I Q GI GC G SGG++AL+ AA ++H+ +AVL D G G P GR +VKFLL++++ A YV+ + G TP++ A S +IVRLL+DAGA+ T +TPLA+ T LR + GE AT++ L RLK R LL R EAVHAVSWLW S P + A G + T T
Sbjct: 168 KANPLLCSHTPMGVSYVPLEMAALHGNPDVAREMIRQVGIRGCGGPSGGVEALRQAADEEHLEFMAVLLDAG---GVVDTGPALILAAENGRAVAVKFLLRRRQADADAYVNGTRDPYGRTPVMCAVDVGAGRLCSPKIVRLLVDAGANTTRAVGVTRITPRWEKTSETPLAFTTRLLREGRVDGEA-ATKEQLQRLKDTRCLLSRAEAVHAVSWLWASGEPPRIAQAAGDTKTET 399
BLAST of mRNA_C-linearis_contig75.15070.1 vs. uniprot
Match: D7FVK3_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVK3_ECTSI) HSP 1 Score: 133 bits (334), Expect = 2.310e-29 Identity = 98/242 (40.50%), Postives = 126/242 (52.07%), Query Frame = 3
Query: 552 KADQQLSSTHSGRPFVPLDAAAQYGHPEVARELILQRGIEGCRGASGGLDALQLAARKQHVNLVAVLT-----DDGRRRG*HRCSPEKRC*IGREASVKFLLQQQRGR-----AYVDSPGE-IGATPLLDACGFARFHPPSGRIVRLLLDAGADDT-------------FRDTPLAYATSFLRNTKDRGEEDATEDLLYRLKVIRRLLLRVEAVHAVSWLWQSDTPATVRAAGGVSTTMTKN 1205
KA+ L+ + +PLD AAQ G V EL+ + GI GC G +GG+ ALQLAA K H++++ LT D G + K G VKFLLQQQ G AYV P + G TPL+ S ++VRLL+DAGAD T TPL+ AT LR K + ++LL RL++IRRLLLRVEAVHA SWLWQ+ P AGG + T T++
Sbjct: 170 KANPLLTRVNLAWQHLPLDTAAQNGRLGVVLELLQRFGIRGCGGGTGGVTALQLAAMKPHMDVMLALTTAGVVDTG-------IALVKATSFGHMDVVKFLLQQQNGTPSEKSAYVSRPRDPCGRTPLICNIDVGLNQSCSPKVVRLLVDAGADTTSIVRFTIQPGTLPVVCTPLSLATEALR-IKIAYRKAIPDELLRRLELIRRLLLRVEAVHATSWLWQNGVPRVGLPAGGTAATETES 403
BLAST of mRNA_C-linearis_contig75.15070.1 vs. uniprot
Match: A0A6H5JMS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMS6_9PHAE) HSP 1 Score: 128 bits (321), Expect = 6.330e-29 Identity = 107/308 (34.74%), Postives = 139/308 (45.13%), Query Frame = 3
Query: 360 LEISSIQGRMTPLHMAASGGRLETMSVLIEAGASVNSRRSNGAXXXXXXXXXXXXXXXXXXXXXKADQQLSSTHSGRPFVPLDAAAQYGHPEVARELILQRGIEGCRGASGGLDALQLAARKQHVNLVAVLTDDGRRRG*HRCSPEKRC*IGREASVKFLLQQQRGRAYVDSPGEIGATPLLDACGFARFHPPSGRIVRLLLDAGADDTFRDTPLAYATSFLRNTKDRGEEDATEDLLYRLKVIRRLLLRVEAVHAVSWLWQSDTPA-TVRAAGGVSTTMTKNQEAWYAVGDCVQVVTLKPRSYVRNE 1280
LE+++ Q TPLH+AA G + +++AGA+ NSRR +GA R +P D A GH EV ELI Q GI GC G+SGG+ ALQ AAR + ++++ VLT G + G A +KFLL+Q R R + P + A P L C P R R A T + LR D G E TE+ L L+ IRRLLLRVEAVHAVSWLW SD T A G T +K+ V+T++ R+ R E
Sbjct: 9 LEVATKQQLCTPLHVAAVNGCAASTRTMLKAGANPNSRRFDGASRYFWRRGKGRWM--------------------RTSLPFDVAVDLGHLEVVNELIRQVGIGGCGGSSGGVRALQQAARNKPLDMLTVLTSAG---VVDTGLALRAAAFGGVAPLKFLLEQARARKTMGGPAD--AAPELCGC---LSKPERTRHPRFQSTAYLVRTTSHPCMGLTMLLLR---DLGTEPLTEEQLNALEAIRRLLLRVEAVHAVSWLWSSDISTFTYSTAQGTGRTTSKSTPG------TPLVLTMRQRARSRRE 279
BLAST of mRNA_C-linearis_contig75.15070.1 vs. uniprot
Match: D7FT11_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT11_ECTSI) HSP 1 Score: 133 bits (334), Expect = 7.300e-29 Identity = 91/215 (42.33%), Postives = 120/215 (55.81%), Query Frame = 3
Query: 597 VPLDAAAQYGHPEVARELILQRGIEGCRGASGGLDALQLAARKQHVNLVAVLTDDG---RRRG*HRCSPEKRC*IGREASVKFLLQQQRGR-------AYVDSPGEIGATPLLDACGFARFHPPSGRIVRLLLDAGADDT-------------FRDTPLAYATSFLRNTKDRGEEDATEDLLYRLKVIRRLLLRVEAVHAVSWLWQSDTPATVRA 1172
VPLD AA++GH +V RELI + GIEGC S G AL AA QH++++A+LT+ G + + + +G EASVKFLL+ + AY+++ G TPL+ C F + RIVR+L+DAGAD T F DTPLA+ LR + AT++ L RL+ I RLLLRV+AVHAVSWLW S P RA
Sbjct: 280 VPLDLAAKHGHTDVVRELIQELGIEGCDATSAGAHALAFAASNQHLDIMAILTEAGVVDTGKALYLAAG-----MGHEASVKFLLRHRHKEGGCGVEGAYLNARDVNGYTPLV-VCTQGCFSQ-APRIVRMLVDAGADTTSPVQVMNLKGGVVFNDTPLAFTKLRLRKKIVADGKPATKEHLQRLEAICRLLLRVDAVHAVSWLWPSGAPFIGRA 487
BLAST of mRNA_C-linearis_contig75.15070.1 vs. uniprot
Match: A0A6H5KSA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSA9_9PHAE) HSP 1 Score: 131 bits (329), Expect = 9.670e-28 Identity = 90/216 (41.67%), Postives = 117/216 (54.17%), Query Frame = 3
Query: 585 GRPFVPLDAAAQYGHPEVARELILQRGIEGCRGASGGLDALQLAARKQHVNLVAVLTDDGR-RRG*HRCSPEKRC*IGREASVKFLLQQQRGR-----AYVDSPGEIGATPLLDACGFARFHPPSGRIVRLLLDAGADDT-------------FRDTPLAYATSFLRNTKDRGEEDATEDLLYRLKVIRRLLLRVEAVHAVSWLWQSDTPATVRAA 1175
GR +PLDAA H V R+LI Q GI+GC GAS G DA + A + Q ++V +L D G G K G EA VK LLQQQRG+ YV+ G TP++ G A S R++RL LDAGAD FR TPLAY T LR+ + RG D+T+ L+ +RR+LL++EA+ AVSW WQSD +++ A
Sbjct: 344 GRIILPLDAAVISKHAAVVRKLIQQLGIQGCGGASAGADASRWAVQTQQYDIVVMLADTGEIDTGRVLIDAAK---FGSEALVKILLQQQRGKHMDWDTYVNKKQPDGRTPVVCRIGRA-LRSGSPRVLRLFLDAGADTASTVRITNKEGVQLFRGTPLAYTTWLLRDQQARGI-DSTKGEPCSLEAVRRMLLQLEAIRAVSWCWQSDALSSIERA 554
BLAST of mRNA_C-linearis_contig75.15070.1 vs. uniprot
Match: D7FVU3_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVU3_ECTSI) HSP 1 Score: 127 bits (319), Expect = 1.100e-27 Identity = 94/230 (40.87%), Postives = 123/230 (53.48%), Query Frame = 3
Query: 570 SSTHSGRPFVPLDAAAQYGHPEVARELILQRGIEGCRGASGGLDALQLAARKQHVNLVAVLTDDGRRRG*HRCSPEKRC*I-----GREASVKFLLQQQRGR---AYVD-SPGEIGATPLLDACGFARFHPPSGRIVRLLLDAGADDT-------------FRDTPLAYATSF-LRNTKDRGEEDATEDLLYRLKVIRRLLLRVEAVHAVSWLWQSDTPATVRAAGGVST 1190
SS SGR FVPL+ AAQ G V EL+ + GI C G SGGLDAL++AA V+++++L D G P + G+EA+V FLL+QQ R +YV+ + + G T LL + + P + RI R L+DAGAD T TPL Y + LR T G+ AT++ L RL+ RR+LLRV AVHAVSW+W SD P R A T
Sbjct: 149 SSESSGRSFVPLEVAAQTGRSAVVSELLREFGIRCCGGPSGGLDALRVAAVYGQVDIMSMLMDAG------VVDPVGLALLAAVGSGKEAAVGFLLRQQEERWQTSYVNIARDDDGLTALLWSFRGNKNKPCNPRITRRLVDAGADTTSAVQLRAKRSRTCVNVTPLEYVNDWALRETN--GDHPATDEQLLRLEATRRVLLRVVAVHAVSWIWPSDAPLLARPANSPRT 370
BLAST of mRNA_C-linearis_contig75.15070.1 vs. uniprot
Match: D8LL76_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL76_ECTSI) HSP 1 Score: 125 bits (313), Expect = 9.370e-27 Identity = 92/204 (45.10%), Postives = 114/204 (55.88%), Query Frame = 3
Query: 582 SGRPFVPLDAAAQYGHPEVARELILQRGIEGCRGASGGLDALQLAARKQHVNLVAVLTDDGRRRG*HRCSPEKRC*IGREASVKFLLQQQ-RGRA---YVDSPGE-IGATPLLDACGFARFHPPSGRIVRLLLDAGADDTF------------RDTPLAYATSFLRNTKDRGEEDATEDLLYRLKVIRRLLLRVEAVHAVSWLW 1142
SG FVPLD AA GH VAREL+ + GI GC GAS G+DAL AA QH++++A+L D G + +GRE ++KFLL+Q+ G A Y +P + G TPLL A P S R+VRLL+DAGAD T + TPL AT L K E+ AT L L+ RRLLL+VE VHA SWLW
Sbjct: 178 SGNTFVPLDGAALNGHLAVARELVQRFGIRGCAGASAGVDALGQAAVDQHLDVMALLCDAGVVDTGNALVAT--VFLGRERALKFLLEQKGEGTARTTYASTPRDGRGHTPLLSA---VTTGPCSPRVVRLLVDAGADATLAVRVPDGFGRSTKYTPLDCATRCLAE-KVVDEDFATAQQLRNLRASRRLLLQVEVVHATSWLW 375 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig75.15070.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig75.15070.1 >prot_C-linearis_contig75.15070.1 ID=prot_C-linearis_contig75.15070.1|Name=mRNA_C-linearis_contig75.15070.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=131bp MTPLHMAASGGRLETMSVLIEAGASVNSRRSNGATPIHVAAQEGKVDAMKback to top mRNA from alignment at C-linearis_contig75:47361..50376+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig75.15070.1 ID=mRNA_C-linearis_contig75.15070.1|Name=mRNA_C-linearis_contig75.15070.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3016bp|location=Sequence derived from alignment at C-linearis_contig75:47361..50376+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig75:47361..50376+ >mRNA_C-linearis_contig75.15070.1 ID=mRNA_C-linearis_contig75.15070.1|Name=mRNA_C-linearis_contig75.15070.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=786bp|location=Sequence derived from alignment at C-linearis_contig75:47361..50376+ (Chordaria linearis ClinC8C monoicous)back to top |