mRNA_C-linearis_contig75.15062.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig75.15062.1 vs. uniprot
Match: A0A6H5K266_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K266_9PHAE) HSP 1 Score: 244 bits (624), Expect = 9.410e-80 Identity = 126/174 (72.41%), Postives = 143/174 (82.18%), Query Frame = 1
Query: 25 MLRAFMDETGITQEFPGPAVLSSTVPLVLCKRDGCLLKLYDKRVKKISKERVARKLKCKPAARARWTASPEPVLHLQRRHLDLYCTSVAAVEVLLNAIDISGSVLDMCGGPGDAMARVLGATCDVVTNDASSRLSPGSRQAPDTHLDPSATTFRADFLANGRQQQPPWVVTSPP 546
MLRAFM+ETGIT+ FPG AVLS T PLVLC+R GCLL LYDKR++ +SKER+ARKLK PAAR +WT SPEPV LQRR LD CTS AAVEVLL A+DISG VLDMCGGP DA+AR+LGATC+++TND S RLSPGS++APD HLD SATTF A FL N QQ+P WVV SPP
Sbjct: 1 MLRAFMEETGITENFPGLAVLSIT-PLVLCQRAGCLLNLYDKRMRVLSKERIARKLKLVPAARTKWTGSPEPVRQLQRRLLDRCCTSDAAVEVLLRAVDISGRVLDMCGGPCDAVARLLGATCELITNDISGRLSPGSKKAPDMHLDASATTFCAAFLENSIQQRPDWVVKSPP 173
BLAST of mRNA_C-linearis_contig75.15062.1 vs. uniprot
Match: A0A6H5KHQ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHQ4_9PHAE) HSP 1 Score: 246 bits (627), Expect = 1.840e-78 Identity = 129/213 (60.56%), Postives = 158/213 (74.18%), Query Frame = 1
Query: 1 QLRPRTASMLRAFMDETGITQEFPGPAVLSSTVP-LVLCKRDGCLLKLYDKRVKKISKERVARKLKCKPAARARWTASPEPVLHLQRRHLDLYCTSVAAVEVLLNAIDISGSVLDMCGGPGDAMARVLGATCDVVTNDASSRLSPGSRQAPDTHLDPSATTFRADFLANGRQQQPPWVVTSPPYKGALKFVKAALSVAKNGVALKLSLSFLEP 636
QLRPRT SMLRAF+ G+ ++FPG L + LV CKR C+LK DK + +R +K K + A WT++PEP +H++RRHLD YCTS+ AVE LL+A+++SG VLDMCGGP DA+AR L TC+VVTND SSRLS +R+APDT LD S +TF A+FLA+G QQQP VV SPPYKGA+KFVKAAL VAK+GVALK SLSFLEP
Sbjct: 27 QLRPRTMSMLRAFVRNAGLAEKFPGVMPLGVGIDSLVRCKRAECVLKQNDKHMSDFCHDRARKKQKRNRSEAATWTSAPEPAVHVKRRHLDRYCTSIVAVEALLDAVNVSGRVLDMCGGPDDAVARKLRDTCEVVTNDVSSRLSSDARRAPDTSLDASKSTFAAEFLADGFQQQPERVVASPPYKGAVKFVKAALCVAKHGVALKRSLSFLEP 239
BLAST of mRNA_C-linearis_contig75.15062.1 vs. uniprot
Match: A0A6H5JUK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK3_9PHAE) HSP 1 Score: 218 bits (554), Expect = 2.440e-67 Identity = 120/211 (56.87%), Postives = 147/211 (69.67%), Query Frame = 1
Query: 7 RPRTASMLRAFMDETGITQEFPG-PAVLSSTVPLVLCKRDGCLLKLYDKRVKKISKERVARKLKCKPAARARWTASPEPVLHLQRRHLDLYCTSVAAVEVLLNAIDISGSVLDMCGGPGDAMARVLGATCDVVTNDASSRLSPGSRQAPDTHLDPSATTFRADFLANGRQQQPPWVVTSPPYKGALKFVKAALSVAKNGVALKLSLSFLEP 636
R RT ++R+F+DE GI +FPG ++ + T L LCKR GCLL+LY K+ S+ERVARK K P W+A+PEPV H +RR LD YCT AVEVL NA+ I+G VLDMCGGP DA+A+ +TC+V+TND SSRLS G T+LD S +FR +F +QP WVVTSPPYKGA+ FVKAAL+VA GVALKL LSFLEP
Sbjct: 39 RARTGELVRSFVDEAGIADKFPGFQSIAAGTNLLALCKRAGCLLELYQKQEWARSRERVARKAKQMPRHSRMWSAAPEPVTHDKRRRLDRYCTLPEAVEVLQNAVAIAGCVLDMCGGPEDAVAQGFRSTCEVLTNDVSSRLSAG------TNLDASLLSFRDNFRKANPGKQPDWVVTSPPYKGAVGFVKAALAVATKGVALKLPLSFLEP 243
BLAST of mRNA_C-linearis_contig75.15062.1 vs. uniprot
Match: D7FJU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJU4_ECTSI) HSP 1 Score: 198 bits (504), Expect = 7.410e-61 Identity = 108/180 (60.00%), Postives = 132/180 (73.33%), Query Frame = 1
Query: 103 LVLCKRDGCLLKLYDKRVKKISKERVARKLKCKPAAR--ARWTASPEPVLHLQRRHLDLYCTSVAAVEVLLNAIDISGSVLDMCGGPGDAMARVLGATCDVVTNDASSRLSPGSRQAPDTHLDPSATTFRADFLANGRQQQPPWVVTSPPYKGALKFVKAALSVAKNGVALKLSLSFLEP 636
LVLC R CLL+LY K++++ +K R KL+ + AR A+WT PEP H++RR LD YCTS AVE LL A+++ G VLDMCGGPGDA+A LGATC VVTND S+RLSPG PDT+LD S +F DFL Q+P WV+TSPPYKGAL++VK+ALS+A GVALKL LSFLEP
Sbjct: 26 LVLCNRPDCLLQLYIKQLREKNKPRT--KLRAQQLARHGAKWTGIPEPRKHIKRRCLDRYCTSPEAVEALLGAVELEGCVLDMCGGPGDAIATRLGATCKVVTNDISTRLSPGGLP-PDTNLDASLASFAVDFLLAKPGQRPDWVLTSPPYKGALEYVKSALSLAAKGVALKLPLSFLEP 202
BLAST of mRNA_C-linearis_contig75.15062.1 vs. uniprot
Match: A0A6H5KD58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD58_9PHAE) HSP 1 Score: 182 bits (461), Expect = 2.940e-54 Identity = 108/210 (51.43%), Postives = 135/210 (64.29%), Query Frame = 1
Query: 4 LRPRTASMLRAFMDETGITQEFPG---PAVLSSTVPLVLCKRDGCLLKLYDKRVKKISKERV----ARKLKCKPA-ARARWTASPEPVLHLQRRHLDLYCTSVAAVEVLLNAIDISGSVLDMCGGPGDAMARVLGATCDVVTNDASSRLSPGSRQAPDTHLDPSATTFRADFLANGRQQQPPWVVTSPPYKGALKFVKAALSVAKNGVAL 609
+RPRT+S +RAF+DE GI +FP + +ST L LCKR GCLL+LY K +++SKER ARK P A WT PEP HL+RR LD YCTS AVE LL A+ I+G +LD+CGGP DA+A LG TC+V+TND S S + DT+LD S +F DF A ++P WVVTSP YK AL FVKAA+S+A GV +
Sbjct: 1 MRPRTSSQVRAFVDEIGIANQFPALDEGGLGAST--LTLCKRSGCLLQLYKKHEQRMSKERSKDRRARKAAQTPRHATGMWTV-PEPQTHLKRRWLDRYCTSPEAVEALLGAVSITGCILDVCGGPTDAVATRLGPTCEVLTNDVS------SGRPADTNLDASLESFPDDFFAASSGKRPDWVVTSPSYKSALTFVKAAMSLATRGVTV 201
BLAST of mRNA_C-linearis_contig75.15062.1 vs. uniprot
Match: A0A6H5K049_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K049_9PHAE) HSP 1 Score: 181 bits (459), Expect = 5.890e-54 Identity = 104/192 (54.17%), Postives = 126/192 (65.62%), Query Frame = 1
Query: 64 EFPGPAVLSSTVP-LVLCKRDGCLLKLYDKRVKKISKERVARKLKCKPAARARWTASPEPVLHLQRRHLDLYCTSVAAVEVLLNAIDISGSVLDMCGGPGDAMARVLGATCDVVTNDASSRLSPGSRQAPDTHLDPSATTFRADFLANGRQQQPPWVVTSPPYKGALKFVKAALSVAKNGVALKLSLSFLEP 636
+FPG ++ LVLCKR GCLL+L+ ++ S+ R+ K P +WT +PEPV L+RR +D YCTS A +E LL + ISG VLDMCGG DA+A L TC V+TND RLSP T+LD S+ +F DFLA QQP W+VTSPPYKGAL FVKAAL+VAK GVALKL LSFLEP
Sbjct: 4 KFPGLKCGDPSIDKLVLCKRAGCLLELFVLNQQRDSRAPTKRRAKRGP----KWTCAPEPVKQLKRRCVDRYCTSPATLEALLGVVSISGCVLDMCGGTDDAVAIRLRDTCQVLTNDVGPRLSPA------TNLDASSASFTDDFLAAHHGQQPDWIVTSPPYKGALAFVKAALTVAKKGVALKLPLSFLEP 185
BLAST of mRNA_C-linearis_contig75.15062.1 vs. uniprot
Match: A0A6H5JXU2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXU2_9PHAE) HSP 1 Score: 151 bits (382), Expect = 4.200e-43 Identity = 77/142 (54.23%), Postives = 99/142 (69.72%), Query Frame = 1
Query: 1 QLRPRTASMLRAFMDETGITQEFPGPAVLSSTVP-LVLCKRDGCLLKLYDKRVKKISKERVARKLKCKPAARARWTASPEPVLHLQRRHLDLYCTSVAAVEVLLNAIDISGSVLDMCGGPGDAMARVLGATCDVVTNDASSR 423
QLRPRT SMLRAF+ G+ ++FPG L + LV CKR C+LK DK + +R +K K + A WT++PEP +H++RRHLD YCTS+ AVE LL+A+++SG VLDMCGGP DA+AR L TC+VVTND SSR
Sbjct: 27 QLRPRTMSMLRAFVRNAGLAEKFPGVMPLGVGIDSLVRCKRAECVLKQNDKHMSDFCHDRARKKQKRNRSEAATWTSAPEPAVHVKRRHLDRYCTSIVAVEALLDAVNVSGRVLDMCGGPDDAVARKLRDTCEVVTNDVSSR 168
BLAST of mRNA_C-linearis_contig75.15062.1 vs. uniprot
Match: A0A6H5KZK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZK3_9PHAE) HSP 1 Score: 143 bits (361), Expect = 3.190e-40 Identity = 78/148 (52.70%), Postives = 97/148 (65.54%), Query Frame = 1
Query: 103 LVLCKRDGCLLKLYDKRVKKISKERVARKLKCKPAARARWTASPEPVLHLQRRHLDLYCTSVAAVEVLLNAIDISGSVLDMCGGPGDAMARVLGATCDVVTNDASSRLSPGSRQAPDTHLDPSATTFRADFLANGRQQQPPWVVTSPP 546
+ LCKR G LL+LY K + S+ERVA K + P W+A+PEPV H +RR LD YCTS AV+ L +A+DI G VLDMCGGP A+A G TC+V+TND SRLSP D++LD S +F +DFL +QP WVVTSPP
Sbjct: 6 VALCKRSGYLLELYKKHERARSRERVAWKAEQTPRHSRTWSAAPEPVTHDKRRRLDRYCTSPGAVDALRDAVDIMGCVLDMCGGPEAAVALGFGGTCEVLTNDVGSRLSP------DSNLDASLLSFPSDFLKAHPGKQPDWVVTSPP 147
BLAST of mRNA_C-linearis_contig75.15062.1 vs. uniprot
Match: A0A6H5KTR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTR5_9PHAE) HSP 1 Score: 140 bits (354), Expect = 1.130e-38 Identity = 74/142 (52.11%), Postives = 92/142 (64.79%), Query Frame = 1
Query: 1 QLRPRTASMLRAFMDETGITQEFPG-PAVLSSTVPLVLCKRDGCLLKLYDKRVKKISKERVARKLKCKPAARARWTASPEPVLHLQRRHLDLYCTSVAAVEVLLNAIDISGSVLDMCGGPGDAMARVLGATCDVVTNDASSR 423
Q R RT +LR+F+DE G+ FPG + + LCKR GCLL+LY K S+ERVARK K P W+A+PEPV H +RR D YCTS AV+ L +A+ I+G VLDMCGGP DA+A G TC+V+TND SSR
Sbjct: 44 QTRARTGELLRSFVDEAGLADRFPGFQSGAAGPNLFALCKRSGCLLELYKKHEWARSRERVARKAKQTPRHSRTWSAAPEPVTHHKRRRFDRYCTSPEAVDALRDAVAITGCVLDMCGGPDDAVAMGFGGTCEVLTNDVSSR 185
BLAST of mRNA_C-linearis_contig75.15062.1 vs. uniprot
Match: D7G0Y0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Y0_ECTSI) HSP 1 Score: 139 bits (349), Expect = 1.010e-37 Identity = 72/136 (52.94%), Postives = 92/136 (67.65%), Query Frame = 1
Query: 229 SPEPVLHLQRRHLDLYCTSVAAVEVLLNAIDISGSVLDMCGGPGDAMARVLGATCDVVTNDASSRLSPGSRQAPDTHLDPSATTFRADFLANGRQQQPPWVVTSPPYKGALKFVKAALSVAKNGVALKLSLSFLEP 636
+PEP HL+RR LD YCTS A++ L A+DI+G VLDMCGGP DA+A L +TC+++TND S S + DT+LD S +F DFLA ++P WV TSPPY AL FVKAA+S+A GV K+ + FLEP
Sbjct: 15 APEPQTHLRRRWLDRYCTSPEAMDASLGAVDITGCVLDMCGGPTDAVATRLRSTCEILTNDVS------SGRPADTNLDASLESFPEDFLAAYSGKRPEWVATSPPYSRALTFVKAAMSLATKGVTFKMHIFFLEP 144 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig75.15062.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig75.15062.1 >prot_C-linearis_contig75.15062.1 ID=prot_C-linearis_contig75.15062.1|Name=mRNA_C-linearis_contig75.15062.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=204bp MLRAFMDETGITQEFPGPAVLSSTVPLVLCKRDGCLLKLYDKRVKKISKEback to top mRNA from alignment at C-linearis_contig75:1765..2655+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig75.15062.1 ID=mRNA_C-linearis_contig75.15062.1|Name=mRNA_C-linearis_contig75.15062.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=891bp|location=Sequence derived from alignment at C-linearis_contig75:1765..2655+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig75:1765..2655+ >mRNA_C-linearis_contig75.15062.1 ID=mRNA_C-linearis_contig75.15062.1|Name=mRNA_C-linearis_contig75.15062.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1224bp|location=Sequence derived from alignment at C-linearis_contig75:1765..2655+ (Chordaria linearis ClinC8C monoicous)back to top |