mRNA_C-linearis_contig74.15046.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig74.15046.1
Unique NamemRNA_C-linearis_contig74.15046.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig74.15046.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig74contigC-linearis_contig74:694940..696085 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size219
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930407.0438344-CDS-C-linearis_contig74:694939..6949971622930407.0438344-CDS-C-linearis_contig74:694939..694997Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 694940..694997 +
1690881053.9098144-CDS-C-linearis_contig74:694939..6949971690881053.9098144-CDS-C-linearis_contig74:694939..694997Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 694940..694997 +
1622930407.0654385-CDS-C-linearis_contig74:695926..6960841622930407.0654385-CDS-C-linearis_contig74:695926..696084Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 695927..696084 +
1690881053.9207323-CDS-C-linearis_contig74:695926..6960841690881053.9207323-CDS-C-linearis_contig74:695926..696084Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 695927..696084 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig74.15046.1prot_C-linearis_contig74.15046.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig74 694940..696084 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig74.15046.1

>prot_C-linearis_contig74.15046.1 ID=prot_C-linearis_contig74.15046.1|Name=mRNA_C-linearis_contig74.15046.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=72bp
RGEPIRHTHRSCVAQHLSEVDCFQAAGGKGAGSSSGDREMQQQIVPPGVA
GTGTRTDATTGGGGDRTWDWKQ
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mRNA from alignment at C-linearis_contig74:694940..696085+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig74.15046.1 ID=mRNA_C-linearis_contig74.15046.1|Name=mRNA_C-linearis_contig74.15046.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1146bp|location=Sequence derived from alignment at C-linearis_contig74:694940..696085+ (Chordaria linearis ClinC8C monoicous)
CGTGGCGAGCCCATCCGCCACACACACCGTTCGTGTGTGGCTCAGCATCT
TTCGGAAGGTTCGAGTGTGTAGCGCGTAGTTGTTTTGCCGATCGATGCTC
TGCGCTCTCTCCTCTTCTTTCACACCTCTCTGACTTTCCGCGTGTTTCAC
CGAGCCTTTGGGCGTGCTCGAGCGGGGAAGGCAGGCGAGACGCGCGTCCA
TCTTCCAGCGACACGGGAGAAGCGGCGGCGGTAGGGACCCACGCTTGACG
ACACACAAACCTATCCCACCTTTATTTTTTCCTAGGCCTTCTGCATCGTG
GGGGGTGGTAGGAAAGCAACGTAGCCGATTGATTCGCTGAAGCGCGTGGA
GAGACGCGGAGGGGAAACGGCGCGGGTGTGTGTGTCAACAACACCCAAGT
CACCTTCGTTCTCTCTCTCCTATCTCTCTCTACAGCCGACGGGAAGATCG
CGCCCGGCAACCCACGCAGTCTAAGCTGCAGATATCCTCTGCCCCCACCT
AACCGCAGAGCCTAACCGATCCTAATTTGGCGACGTACGCACTTTTGGCT
TTTGGCAACGAAGCCCCATGCTCTCAAATTCCGTCCAAATTTCAACGAGT
CTGCAAAAAAGGAAAATAGGCCGGGCTTTCATTTTTTTCCCATTTTATTC
TACATTTGATTGCTTCTTTTGCTGTGTGTTTTGGGTGTGTGTGCTGCACG
TTGCTGTGTTACTGCTCTGATCGACTGCGGCTTTTGAGACGGTAGTGACC
CTTCGTACTTGCTGTCGTGTGCTGTTCTTCGCGTGCTACTGCTCTCTTCT
TCGAACGTAGATCTGACTGAAAACCTGCACAGCAGTAGGGAGATTGTCTA
GAGTTGTGTTCCCTGTGCCCCGTTCTCCCCTCTCTGATCCGCGTACGACT
CGTAGACAAGACCGTGACCCTAAGAACCTACGTGTTGCCGTGCGCTGTTC
CTCCTTCGCGTGCCAACTTTAATTGTCGAACGTGCAGTAGATTGTTTCCA
AGCTGCGGGAGGAAAGGGAGCAGGATCATCGTCGGGAGATCGTGAGATGC
AGCAGCAAATCGTCCCTCCCGGCGTCGCCGGAACAGGGACACGGACCGAT
GCCACCACCGGGGGCGGCGGAGATCGAACCTGGGATTGGAAACAGG
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Coding sequence (CDS) from alignment at C-linearis_contig74:694940..696085+

>mRNA_C-linearis_contig74.15046.1 ID=mRNA_C-linearis_contig74.15046.1|Name=mRNA_C-linearis_contig74.15046.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at C-linearis_contig74:694940..696085+ (Chordaria linearis ClinC8C monoicous)
CGTGGCGAGCCCATCCGCCACACACACCGTTCGTGTGTGGCTCAGCATCT
TTCGGAAGCGTGGCGAGCCCATCCGCCACACACACCGTTCGTGTGTGGCT
CAGCATCTTTCGGAAGTAGATTGTTTCCAAGCTGCGGGAGGAAAGGGAGC
AGGATCATCGTCGGGAGATCGTGAGATGCAGCAGCAAATCGTCCCTCCCG
GCGTCGCCGGAACAGGGACACGGACCGATGCCACCACCGGGGGCGGCGGA
GATCGAACCTGGGATTGGAAACAGTAGATTGTTTCCAAGCTGCGGGAGGA
AAGGGAGCAGGATCATCGTCGGGAGATCGTGAGATGCAGCAGCAAATCGT
CCCTCCCGGCGTCGCCGGAACAGGGACACGGACCGATGCCACCACCGGGG
GCGGCGGAGATCGAACCTGGGATTGGAAACAG
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