mRNA_C-linearis_contig74.15045.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig74.15045.1
Unique NamemRNA_C-linearis_contig74.15045.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig74.15045.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig74contigC-linearis_contig74:691206..691662 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size458
Cds size435
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930407.3408732-UTR-C-linearis_contig74:691205..6912271622930407.3408732-UTR-C-linearis_contig74:691205..691227Chordaria linearis ClinC8C monoicousUTRC-linearis_contig74 691206..691227 +
1690881053.9991376-UTR-C-linearis_contig74:691205..6912271690881053.9991376-UTR-C-linearis_contig74:691205..691227Chordaria linearis ClinC8C monoicousUTRC-linearis_contig74 691206..691227 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930407.3594437-CDS-C-linearis_contig74:691227..6916621622930407.3594437-CDS-C-linearis_contig74:691227..691662Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 691228..691662 +
1690881054.0104365-CDS-C-linearis_contig74:691227..6916621690881054.0104365-CDS-C-linearis_contig74:691227..691662Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 691228..691662 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig74.15045.1prot_C-linearis_contig74.15045.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig74 691228..691662 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig74.15045.1

>prot_C-linearis_contig74.15045.1 ID=prot_C-linearis_contig74.15045.1|Name=mRNA_C-linearis_contig74.15045.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=145bp
MELFPNQVMTKQQIQQQQPRRQTDRSDHRNIPTIAPHLSYLPVAARYLPV
ALLIPGMPRSCSLSPTSVIVIIPFCCLVVGFAFLCRFRKPVSRTPYHSVK
LYIILPSLGLHLISTPLTGIPETLYIQHQVAGCDHPVWLMSLLSF
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mRNA from alignment at C-linearis_contig74:691206..691662+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig74.15045.1 ID=mRNA_C-linearis_contig74.15045.1|Name=mRNA_C-linearis_contig74.15045.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=457bp|location=Sequence derived from alignment at C-linearis_contig74:691206..691662+ (Chordaria linearis ClinC8C monoicous)
GGGAACGATAATTCGAAAGTTCATGGAATTGTTTCCAAACCAGGTGATGA
CTAAACAGCAGATACAGCAGCAACAGCCAAGGCGACAGACGGACCGGAGC
GACCACCGCAACATCCCAACCATCGCACCTCACCTATCGTACTTACCCGT
AGCGGCACGGTACTTACCCGTAGCGTTACTCATTCCTGGCATGCCGCGCT
CGTGTTCCTTATCCCCTACCTCGGTGATCGTGATCATCCCATTCTGTTGT
CTTGTTGTAGGTTTCGCATTTTTGTGTCGGTTTCGGAAGCCAGTGTCTCG
AACGCCGTATCATTCCGTTAAACTGTACATTATCCTACCTTCCCTTGGCC
TCCACTTGATCTCCACTCCTCTAACTGGCATTCCAGAAACACTTTATATC
CAACACCAGGTTGCTGGCTGCGATCACCCTGTTTGGCTGATGTCTCTGCT
TTCGTTC
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Coding sequence (CDS) from alignment at C-linearis_contig74:691206..691662+

>mRNA_C-linearis_contig74.15045.1 ID=mRNA_C-linearis_contig74.15045.1|Name=mRNA_C-linearis_contig74.15045.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=870bp|location=Sequence derived from alignment at C-linearis_contig74:691206..691662+ (Chordaria linearis ClinC8C monoicous)
ATGGAATTGTTTCCAAACCAGGTGATGACTAAACAGCAGATACAGCAGCA
ACAGCCAAGGCGACAGACGGACCGGAGCGACCACCGCAACATCCCAACCA
TCGCACCTCACCTATCGTACTTACCCGTAGCGGCACGGTACTTACCCGTA
GCGTTACTCATTCCTGGCATGCCGCGCTCGTGTTCCTTATCCCCTACCTC
GGTGATCGTGATCATCCCATTCTGTTGTCTTGTTGTAGGTTTCGCATTTT
TGTGTCGGTTTCGGAAGCCAGTGTCTCGAACGCCGTATCATTCCGTTAAA
CTGTACATTATCCTACCTTCCCTTGGCCTCCACTTGATCTCCACTCCTCT
AACTGGCATTCCAGAAACACTTTATATCCAACACCAGGTTGCTGGCTGCG
ATCACCCTGTTTGGCTGATGTCTCTGCTTTCGTTCATGGAATTGTTTCCA
AACCAGGTGATGACTAAACAGCAGATACAGCAGCAACAGCCAAGGCGACA
GACGGACCGGAGCGACCACCGCAACATCCCAACCATCGCACCTCACCTAT
CGTACTTACCCGTAGCGGCACGGTACTTACCCGTAGCGTTACTCATTCCT
GGCATGCCGCGCTCGTGTTCCTTATCCCCTACCTCGGTGATCGTGATCAT
CCCATTCTGTTGTCTTGTTGTAGGTTTCGCATTTTTGTGTCGGTTTCGGA
AGCCAGTGTCTCGAACGCCGTATCATTCCGTTAAACTGTACATTATCCTA
CCTTCCCTTGGCCTCCACTTGATCTCCACTCCTCTAACTGGCATTCCAGA
AACACTTTATATCCAACACCAGGTTGCTGGCTGCGATCACCCTGTTTGGC
TGATGTCTCTGCTTTCGTTC
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