mRNA_C-linearis_contig74.15043.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig74.15043.1
Unique NamemRNA_C-linearis_contig74.15043.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig74.15043.1 vs. uniprot
Match: A0A6H5KTL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL0_9PHAE)

HSP 1 Score: 402 bits (1033), Expect = 1.030e-132
Identity = 241/386 (62.44%), Postives = 276/386 (71.50%), Query Frame = 3 
Query:   27 MLRTFPRSICQAARPGRPSSGKACAASILRERATQPSSTAGRSVTSWASTSTSR-PRSAGSAGQQQMPSLSIAMKVLVRSKSSMSSSAEHGWEHEGLPVAPLLRGSQELPANLKLAQEAWPE----QGEEAQGDDEDEVDTPE-----------EPLSEEDLSAMEALLDIPDLTEVN-LDVEVKSWLDGTPVGAVSLSPEVFGVPVRRDVVHDVVRWQLAKRRSGNGQTKSIAEVRGSGRKVRPQKGGGIARAGHSRPPHWRGGAKAHGPRRRDFSFKLNKKFVKLGLRVALSARLREGQLMVVDNLKIDSFSTAEMIKIIKARGIDGEVTFVVGGDPQAEFMRSTTNIVGVKVLAARGANVYDIVKRPNLVLSQDAVEHLEEVL 1133
            MLR+ PRS+C++AR  R     A AA+ L E  T  S     S T+ A  S  R PR+    G   +P+ +     L RS SS+ SS    WE EGLPVAP+  GS+ LP+NLKLA EAWP     +G  A+G                     +PLSEED  A+ ALLD P L   + L+VEV +W DG PV  VSL+P VFGVPVRRDVVH+VVRWQLA+RR GNGQTK I E+ GSGRKVRPQKGGG+ARAGHSRPPHWRGGAKAHGPRRRDFSFKLNKKFV+LGLRVALSARLREGQL VVD+LK D F T+ MIK IKARGIDG VTF+VGGDPQ EFMRS +NIVGVKVL+ARGANV+DI+KRPNLVL+QDAV HLEE L
Sbjct:    2 MLRSLPRSVCRSARSSRAPDSNAPAAAGLLEGRTDRSVRPCGSWTAAAGASAKRQPRAIPHVGP--LPTTAYMKFPLDRSMSSLKSSQ---WEREGLPVAPVHSGSEPLPSNLKLAAEAWPAATAGEGGNAEGXXXXXXXXXXXXXXXXXXXXTDPLSEEDHDAIAALLDTPGLAASDDLEVEVVAWSDGAPVATVSLAPSVFGVPVRRDVVHEVVRWQLARRRKGNGQTKRIGEISGSGRKVRPQKGGGVARAGHSRPPHWRGGAKAHGPRRRDFSFKLNKKFVRLGLRVALSARLREGQLKVVDDLKSDGFRTSAMIKTIKARGIDGPVTFMVGGDPQVEFMRSVSNIVGVKVLSARGANVHDIIKRPNLVLTQDAVTHLEEFL 382
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BLAST of mRNA_C-linearis_contig74.15043.1 vs. uniprot
Match: D8LD33_ECTSI (50S ribosomal protein L4P n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD33_ECTSI)

HSP 1 Score: 395 bits (1015), Expect = 3.580e-131
Identity = 216/303 (71.29%), Postives = 239/303 (78.88%), Query Frame = 3 
Query:  252 LVRSKSSMSSSAEHGWEHEGLPVAPLLRGSQELPANLKLAQEAWPEQGEEAQGDDEDEVDTPEE--------PLSEEDLSAMEALLDIPDLTEVN-LDVEVKSWLDGTPVGAVSLSPEVFGVPVRRDVVHDVVRWQLAKRRSGNGQTKSIAEVRGSGRKVRPQKGGGIARAGHSRPPHWRGGAKAHGPRRRDFSFKLNKKFVKLGLRVALSARLREGQLMVVDNLKIDSFSTAEMIKIIKARGIDGEVTFVVGGDPQAEFMRSTTNIVGVKVLAARGANVYDIVKRPNLVLSQDAVEHLEEVL 1133
            LVRS SS+ SS    WE EGLPVAP+  GS+ LP+NLKLA EAWP       GD E++              PLSEED  A+ ALLDIP L   + L+VEV +W DG PV  VSL+P VFGVPVRRDVVH+VVRWQLA+RR GNGQTK I E+ GSGRKVRPQKGGG+ARAGHSRPPHWRGGAKAHGPRRRDFSFKLNKKFV+LGLRVALSARLREGQL VVD+LK D F T+ MIK IKARGIDG VTFVVGGDPQ EFMRS +NI+G KVL ARGANV+DI+KRPNLVL+QDAV HLEE L
Sbjct:    5 LVRSMSSLKSSQ---WEREGLPVAPVQSGSEPLPSNLKLAVEAWPAATAGEGGDAEEDAXXXXXXXXXXXXXPLSEEDHDAIAALLDIPGLAATDDLEVEVVAWADGAPVATVSLAPSVFGVPVRRDVVHEVVRWQLARRRKGNGQTKRIGEISGSGRKVRPQKGGGVARAGHSRPPHWRGGAKAHGPRRRDFSFKLNKKFVRLGLRVALSARLREGQLKVVDDLKSDGFKTSAMIKTIKARGIDGPVTFVVGGDPQVEFMRSVSNIMGAKVLPARGANVHDIIKRPNLVLTQDAVTHLEEFL 304
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BLAST of mRNA_C-linearis_contig74.15043.1 vs. uniprot
Match: A0A835ZAZ5_9STRA (Ribosomal protein L4 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAZ5_9STRA)

HSP 1 Score: 184 bits (467), Expect = 2.290e-49
Identity = 106/212 (50.00%), Postives = 140/212 (66.04%), Query Frame = 3 
Query:  504 EVNLDVEVKSWLDGTPVGAVSLSPEVFGVPVRRDVVHDVVRWQLAKRRSGNGQTKSIAEVRGSGRKVRPQKGGGIARAGHSRPPHWRGGAKAHGPR-RRDFSFKLNKKFVKLGLRVALSARLREGQLMVVDNLKID-SFSTAEMIKIIKARGIDGEVTFVVGGDPQAEFMRSTTNIVGVKVLAARGANVYDIVKRPNLVLSQDAVEHLEEVL 1133
            E +  V V   + G  V  V+L P +FG  +RRDVVH VVRWQLA RR G  +TK I+EV GSG+K+RPQKG G AR GH RPPHWRGGAKAHGP+  RD+S+KL+KK  K+GLRVALSA+LRE +L+VVD L  D + +T    + ++A G+      V G  P+     +T ++ GVK+L    AN YDI++   LV+S+  ++ L E L
Sbjct:  129 EPSFTVPVIDLVTGEEVDTVALDPFIFGHEIRRDVVHAVVRWQLACRRQGAAKTKLISEVSGSGKKMRPQKGSGQARCGHKRPPHWRGGAKAHGPKGNRDWSYKLHKKVRKMGLRVALSAKLRERKLVVVDALTTDGAAATGPTAERLRALGLLRSALLVDGAAPEDALAHATRHLPGVKLLWGGAANCYDILRSDRLVVSRAGLQFLTEKL 340
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BLAST of mRNA_C-linearis_contig74.15043.1 vs. uniprot
Match: A0A6G0XNJ9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XNJ9_9STRA)

HSP 1 Score: 176 bits (445), Expect = 4.690e-47
Identity = 95/208 (45.67%), Postives = 137/208 (65.87%), Query Frame = 3 
Query:  510 NLDVEVKSWLDGTPVGAVSLSPEVFGVPVRRDVVHDVVRWQLAKRRSGNGQTKSIAEVRGSGRKVRPQKGGGIARAGHSRPPHWRGGAKAHGPRRRDFSFKLNKKFVKLGLRVALSARLREGQLMVVDNLKIDSFSTAEMIKIIKARGIDGEVTFVVGGDPQAEFMRSTTNIVGVKVLAARGANVYDIVKRPNLVLSQDAVEHLEEVL 1133
            N+  ++ ++ DG  VG+++LS  VFG PVR+D++H VV+WQLA RRSGN +TK+ +EV GS +KV  QKG G AR G+ RPP WRGG +AHGP  RD S+ L KK   +GLRVALS +L EG+L +V +L ++   T  M  +++ +G D    F+ G +    F+ ST N+  V V+  +  NVY I+ +  LV+S+  V++LEE L
Sbjct:   62 NIQAKILTFADGAAVGSLTLSRSVFGTPVRKDLLHRVVKWQLANRRSGNHKTKTRSEVSGSTKKVWKQKGSGRARVGNRRPPQWRGGYRAHGPVVRDHSYSLPKKVRAMGLRVALSTKLAEGKLAIVKDLHVEEDKTKPMKSLLETKGWD-HALFIDGDETSRNFVLSTRNLPNVDVIRQKNINVYAILHKDVLVVSEKTVKYLEERL 268
[Close]
BLAST of mRNA_C-linearis_contig74.15043.1 vs. uniprot
Match: A0A1V9ZG37_9STRA (50S ribosomal protein L4 n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9ZG37_9STRA)

HSP 1 Score: 175 bits (443), Expect = 7.220e-47
Identity = 96/208 (46.15%), Postives = 138/208 (66.35%), Query Frame = 3 
Query:  510 NLDVEVKSWLDGTPVGAVSLSPEVFGVPVRRDVVHDVVRWQLAKRRSGNGQTKSIAEVRGSGRKVRPQKGGGIARAGHSRPPHWRGGAKAHGPRRRDFSFKLNKKFVKLGLRVALSARLREGQLMVVDNLKIDSFSTAEMIKIIKARGIDGEVTFVVGGDPQAEFMRSTTNIVGVKVLAARGANVYDIVKRPNLVLSQDAVEHLEEVL 1133
            N+  ++ S+ DG  +G +SL+  VFG P+R+D++  VV+WQLA RRSGN +TK+ +EV GS RK   QKG G AR G+ RPP WRGG +AHGP  RD S+ L KK   +GLRVALSA+L EG+L +V +L I+S  T    ++++++G D +  FV G +    F+ +T N+  V V+  +  NVY I+ +  LVLS+  V++LEE L
Sbjct:   54 NVQAKLLSFKDGAQIGTLSLNRSVFGAPIRKDILQRVVKWQLANRRSGNHKTKTRSEVSGSTRKAWAQKGSGRARVGNIRPPQWRGGYRAHGPVVRDHSYSLPKKVRAMGLRVALSAKLAEGKLAIVQDLSIESEKTKAAKQLLESKGWD-DALFVDGAEAPKNFVLATRNLARVDVIREQQVNVYSILHKDVLVLSEKTVKYLEERL 260
[Close]
BLAST of mRNA_C-linearis_contig74.15043.1 vs. uniprot
Match: A0A485KYQ5_9STRA (Aste57867_13666 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KYQ5_9STRA)

HSP 1 Score: 175 bits (443), Expect = 1.020e-46
Identity = 97/208 (46.63%), Postives = 137/208 (65.87%), Query Frame = 3 
Query:  510 NLDVEVKSWLDGTPVGAVSLSPEVFGVPVRRDVVHDVVRWQLAKRRSGNGQTKSIAEVRGSGRKVRPQKGGGIARAGHSRPPHWRGGAKAHGPRRRDFSFKLNKKFVKLGLRVALSARLREGQLMVVDNLKIDSFSTAEMIKIIKARGIDGEVTFVVGGDPQAEFMRSTTNIVGVKVLAARGANVYDIVKRPNLVLSQDAVEHLEEVL 1133
            N+  +V S+ DG  VG+++LS  VFG P+R+D++  VV+WQLA RRSGN +TK+ +EV GS +K   QKG G AR G+ RPP WRGG +AHGP  RD S+ L KK   +GLRVALSA+L EG+L +V +L ++S  T  M +++  +G D    F+ G +    F+ ST N+  V V+  R  +VY I+ +  LVLS+  V++LEE L
Sbjct:   66 NIQAKVLSFNDGASVGSLTLSRSVFGAPIRKDILQRVVKWQLANRRSGNHKTKTRSEVSGSTKKAWKQKGSGRARVGNIRPPQWRGGYRAHGPVVRDHSYSLPKKVRAMGLRVALSAKLAEGKLAIVQDLDVESEKTKAMKELLATKGWD-HALFIDGEEASRNFVLSTRNLPHVDVIRQRNISVYSILHKDVLVLSEKTVKYLEERL 272
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BLAST of mRNA_C-linearis_contig74.15043.1 vs. uniprot
Match: A0A1V9ZKR4_9STRA (50S ribosomal protein L4 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZKR4_9STRA)

HSP 1 Score: 172 bits (435), Expect = 1.040e-45
Identity = 94/208 (45.19%), Postives = 138/208 (66.35%), Query Frame = 3 
Query:  510 NLDVEVKSWLDGTPVGAVSLSPEVFGVPVRRDVVHDVVRWQLAKRRSGNGQTKSIAEVRGSGRKVRPQKGGGIARAGHSRPPHWRGGAKAHGPRRRDFSFKLNKKFVKLGLRVALSARLREGQLMVVDNLKIDSFSTAEMIKIIKARGIDGEVTFVVGGDPQAEFMRSTTNIVGVKVLAARGANVYDIVKRPNLVLSQDAVEHLEEVL 1133
            N+  +V S++DG+ V  +SL+  VFG P+R+D++H VV+WQLA RRSGN +TK+ +EV GS RK   QKG G AR G+ RPP WRGG +AHGP  RD S+ L KK   +GLRVALS ++ EG+L +V +L+I+S  T    ++++++G D +  FV G +    F+ +T N+  V V+     NVY I+ +  LV+S+   ++LEE L
Sbjct:   55 NVQAKVLSFVDGSEVSTLSLNRSVFGAPLRKDILHRVVKWQLANRRSGNHKTKTRSEVSGSTRKAWAQKGSGRARVGNIRPPQWRGGYRAHGPVVRDHSYSLPKKVRAMGLRVALSTKMAEGKLAIVKDLEIESEKTKAAKQLLESKGWD-DALFVDGSEAPKNFVLATRNLPRVDVIRDHQVNVYSILHKDILVISEKTAKYLEERL 261
[Close]
BLAST of mRNA_C-linearis_contig74.15043.1 vs. uniprot
Match: A0A7S2DV07_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DV07_9STRA)

HSP 1 Score: 171 bits (434), Expect = 9.540e-45
Identity = 102/198 (51.52%), Postives = 135/198 (68.18%), Query Frame = 3 
Query:  552 VGAVSLSPEVFGVPVRRDVVHDVVRWQLAKRRSGNGQTKSIAEVRGSGRKVRPQKGGGIARAGHSRPPHWRGGAKAHGPRRRD-FSFKLNKKFVKLGLRVALSARLREGQLMVVDNLKIDSFSTAEMIKIIKARGIDGEVTFV---VGGDPQAEFMRSTTNIVGVKVLAARGANVYDIVKRPNLVLSQDAVEHLEEVL 1133
            V  +SL   VFG P+R D++H VVRWQLAKRR G   TK+I+EV GSG+K+RPQKG G ARAGHSRPPHWR GA AHGPR    ++FKLNKK  +LGL  ALS +L EG+L VVD+L  +S  T  + + +  +G   ++ FV   + GD  + F ++++N+  V  L + G NVYDI+K  ++VL+ DAV  LEE L
Sbjct:  137 VTELSLDSRVFGRPLRIDILHQVVRWQLAKRRRGTAHTKNISEVSGSGKKMRPQKGTGQARAGHSRPPHWRHGAVAHGPRGETIWTFKLNKKVRRLGLLTALSQKLSEGRLHVVDSLATESLKTRALEQRLVHQGWTDKILFVDDLLTGD--SFFRKASSNLPYVHTLPSIGLNVYDILKATDVVLTVDAVAALEERL 332
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BLAST of mRNA_C-linearis_contig74.15043.1 vs. uniprot
Match: H6SSH0_PARPM (50S ribosomal protein L4 n=2 Tax=Pararhodospirillum TaxID=1612157 RepID=H6SSH0_PARPM)

HSP 1 Score: 167 bits (422), Expect = 1.380e-44
Identity = 95/204 (46.57%), Postives = 137/204 (67.16%), Query Frame = 3 
Query:  522 EVKSWLDGTPVGAVSLSPEVFGVPVRRDVVHDVVRWQLAKRRSGNGQTKSIAEVRGSGRKVRPQKGGGIARAGHSRPPHWRGGAKAHGPRRRDFSFKLNKKFVKLGLRVALSARLREGQLMVVDNLKIDSFSTAEMIKIIKARGIDGEVTFVVGGDPQAEFMRSTTNIVGVKVLAARGANVYDIVKRPNLVLSQDAVEHLEEVL 1133
            EVK+ LDG   G+V LS  VFG+PVR D++H +VRWQLAKR++G  +TK I+E+ G+  K   QKG G AR G  R P +RGGA   GP  R  +  L KK  KLGL+ ALSA++  G+++++D  K ++  T +++  +KA G++ +  F+ G +   +F  +  NIVG+ VL ++GANVYDI++R  LVL+ DAV+HLEE L
Sbjct:    4 EVKT-LDGANAGSVELSEAVFGLPVRADLLHRLVRWQLAKRQAGTHKTKGISEISGTTAKPFKQKGTGNARQGSKRSPQFRGGATIFGPVVRSHAHDLPKKVRKLGLKTALSAKVAAGEILILDQAKSENGKTKDLLAQVKALGLN-KALFIDGPEVDEKFALAARNIVGIDVLPSQGANVYDILRRDTLVLTLDAVKHLEERL 205
[Close]
BLAST of mRNA_C-linearis_contig74.15043.1 vs. uniprot
Match: A0A024UTI0_9STRA (50S ribosomal protein L4 n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024UTI0_9STRA)

HSP 1 Score: 168 bits (426), Expect = 4.020e-44
Identity = 95/208 (45.67%), Postives = 135/208 (64.90%), Query Frame = 3 
Query:  510 NLDVEVKSWLDGTPVGAVSLSPEVFGVPVRRDVVHDVVRWQLAKRRSGNGQTKSIAEVRGSGRKVRPQKGGGIARAGHSRPPHWRGGAKAHGPRRRDFSFKLNKKFVKLGLRVALSARLREGQLMVVDNLKIDSFSTAEMIKIIKARGIDGEVTFVVGGDPQAEFMRSTTNIVGVKVLAARGANVYDIVKRPNLVLSQDAVEHLEEVL 1133
            N+  +V S+ DG+ V  ++L+  VFG PVR+D++H VV+WQLA RRSGN +TK+ +EV GS +K   QKG G AR G+ RPP WRGG +AHGP  RD S+ L KK   +GLRVALS +L EG+L +V +L  +S  T  M  ++ ++G D    FV G +    F+ +T N+  V ++  +  NVY I+ +  LVLS+  V++LEE L
Sbjct:   80 NIQAKVLSFADGSVVDTMTLNRNVFGCPVRKDILHRVVKWQLANRRSGNHKTKTRSEVSGSTKKAWKQKGSGRARVGNIRPPQWRGGYRAHGPVVRDHSYSLPKKVRAMGLRVALSTKLAEGKLAIVRDLNPESEKTKTMKALLTSKGWD-HALFVDGEEADRNFVLATRNLPTVDIIRQQNINVYAILHKDLLVLSEKTVKYLEERL 286
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig74.15043.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTL0_9PHAE1.030e-13262.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LD33_ECTSI3.580e-13171.2950S ribosomal protein L4P n=1 Tax=Ectocarpus silic... [more]
A0A835ZAZ5_9STRA2.290e-4950.00Ribosomal protein L4 domain-containing protein n=1... [more]
A0A6G0XNJ9_9STRA4.690e-4745.67Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A1V9ZG37_9STRA7.220e-4746.1550S ribosomal protein L4 n=3 Tax=Saprolegniaceae T... [more]
A0A485KYQ5_9STRA1.020e-4646.63Aste57867_13666 protein n=1 Tax=Aphanomyces stella... [more]
A0A1V9ZKR4_9STRA1.040e-4545.1950S ribosomal protein L4 n=1 Tax=Thraustotheca cla... [more]
A0A7S2DV07_9STRA9.540e-4551.52Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
H6SSH0_PARPM1.380e-4446.5750S ribosomal protein L4 n=2 Tax=Pararhodospirillu... [more]
A0A024UTI0_9STRA4.020e-4445.6750S ribosomal protein L4 n=3 Tax=Aphanomyces TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig74contigC-linearis_contig74:684572..689758 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score401.7
Seed ortholog evalue3.6e-109
Seed eggNOG ortholog2880.D8LD33
Preferred nameyml6
KEGG koko:K02926
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
Hectar predicted targeting categorymitochondrion
GOsGO:0000313,GO:0000315,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005761,GO:0005762,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022626,GO:0031974,GO:0032543,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070013,GO:0071704,GO:0097159,GO:0098798,GO:0140053,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0088@1,KOG1624@2759
Ec32 ortholog description50S ribosomal protein L4
Ec32 orthologEc-11_000280.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons6
Model size1806
Cds size1119
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig74.15043.1prot_C-linearis_contig74.15043.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig74 684598..689097 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930417.9468796-UTR-C-linearis_contig74:684571..6845971622930417.9468796-UTR-C-linearis_contig74:684571..684597Chordaria linearis ClinC8C monoicousUTRC-linearis_contig74 684572..684597 +
1690881059.4463968-UTR-C-linearis_contig74:684571..6845971690881059.4463968-UTR-C-linearis_contig74:684571..684597Chordaria linearis ClinC8C monoicousUTRC-linearis_contig74 684572..684597 +
1622930418.088396-UTR-C-linearis_contig74:689097..6897581622930418.088396-UTR-C-linearis_contig74:689097..689758Chordaria linearis ClinC8C monoicousUTRC-linearis_contig74 689098..689758 +
1690881059.5241156-UTR-C-linearis_contig74:689097..6897581690881059.5241156-UTR-C-linearis_contig74:689097..689758Chordaria linearis ClinC8C monoicousUTRC-linearis_contig74 689098..689758 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930417.967514-CDS-C-linearis_contig74:684597..6849851622930417.967514-CDS-C-linearis_contig74:684597..684985Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 684598..684985 +
1690881059.4581144-CDS-C-linearis_contig74:684597..6849851690881059.4581144-CDS-C-linearis_contig74:684597..684985Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 684598..684985 +
1622930417.9877388-CDS-C-linearis_contig74:686368..6866161622930417.9877388-CDS-C-linearis_contig74:686368..686616Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 686369..686616 +
1690881059.4682946-CDS-C-linearis_contig74:686368..6866161690881059.4682946-CDS-C-linearis_contig74:686368..686616Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 686369..686616 +
1622930418.023983-CDS-C-linearis_contig74:687210..6873931622930418.023983-CDS-C-linearis_contig74:687210..687393Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 687211..687393 +
1690881059.4790714-CDS-C-linearis_contig74:687210..6873931690881059.4790714-CDS-C-linearis_contig74:687210..687393Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 687211..687393 +
1622930418.0447133-CDS-C-linearis_contig74:687917..6880161622930418.0447133-CDS-C-linearis_contig74:687917..688016Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 687918..688016 +
1690881059.491027-CDS-C-linearis_contig74:687917..6880161690881059.491027-CDS-C-linearis_contig74:687917..688016Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 687918..688016 +
1622930418.0607677-CDS-C-linearis_contig74:688491..6885991622930418.0607677-CDS-C-linearis_contig74:688491..688599Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 688492..688599 +
1690881059.5008733-CDS-C-linearis_contig74:688491..6885991690881059.5008733-CDS-C-linearis_contig74:688491..688599Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 688492..688599 +
1622930418.0737278-CDS-C-linearis_contig74:689004..6890971622930418.0737278-CDS-C-linearis_contig74:689004..689097Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 689005..689097 +
1690881059.5120504-CDS-C-linearis_contig74:689004..6890971690881059.5120504-CDS-C-linearis_contig74:689004..689097Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 689005..689097 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig74.15043.1

>prot_C-linearis_contig74.15043.1 ID=prot_C-linearis_contig74.15043.1|Name=mRNA_C-linearis_contig74.15043.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=373bp
MLRTFPRSICQAARPGRPSSGKACAASILRERATQPSSTAGRSVTSWAST
STSRPRSAGSAGQQQMPSLSIAMKVLVRSKSSMSSSAEHGWEHEGLPVAP
LLRGSQELPANLKLAQEAWPEQGEEAQGDDEDEVDTPEEPLSEEDLSAME
ALLDIPDLTEVNLDVEVKSWLDGTPVGAVSLSPEVFGVPVRRDVVHDVVR
WQLAKRRSGNGQTKSIAEVRGSGRKVRPQKGGGIARAGHSRPPHWRGGAK
AHGPRRRDFSFKLNKKFVKLGLRVALSARLREGQLMVVDNLKIDSFSTAE
MIKIIKARGIDGEVTFVVGGDPQAEFMRSTTNIVGVKVLAARGANVYDIV
KRPNLVLSQDAVEHLEEVLIPQ*
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mRNA from alignment at C-linearis_contig74:684572..689758+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig74.15043.1 ID=mRNA_C-linearis_contig74.15043.1|Name=mRNA_C-linearis_contig74.15043.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5187bp|location=Sequence derived from alignment at C-linearis_contig74:684572..689758+ (Chordaria linearis ClinC8C monoicous)
AGAAGGCCGCTTTGGGCTTGCAGAACATGTTACGCACCTTTCCTCGCTCG
ATCTGTCAAGCGGCGCGTCCAGGCCGACCATCAAGCGGCAAAGCTTGCGC
TGCCAGCATCCTCAGAGAACGAGCAACCCAGCCGAGCTCGACGGCCGGAC
GATCAGTCACATCATGGGCTTCGACATCGACATCGCGGCCAAGGAGTGCT
GGATCTGCTGGACAGCAGCAAATGCCTTCCTTGTCGATAGCAATGAAGGT
GCTGGTTAGGTCCAAGTCCTCGATGTCTAGTTCGGCTGAGCACGGGTGGG
AGCACGAAGGCCTTCCGGTGGCGCCGTTGCTCCGCGGTAGCCAGGAGCTG
CCCGCTAACCTCAAGCTCGCGCAGGAGGCCTGGCCGGAGCAGGGAGAAGA
GGCGCAGGGAGATGGTGAGAGACAGCAACACGATTGTCCGGCTGCGTTGC
GTTGTGTTTGGTTCAGTTCTCTTGGTTTATGTACTTGGCACACATATCAT
CAATAGCGCGGACATGATGTCTCCCATTCAGTACTACTGCTGCTGTGATG
AAGGGTACTTCTGTAGGTGTGATCGTGTGGTCAAACCACCGCTGCCTGTA
CGTACACGCAGCCACAGAACGGTGGTGGTGTGTGTTCGAGGTCGTGTTCG
TGGTGTGTTAGTTTGGCAGCGTACGCGGCATCTGGCTTGGGCCGTCTGCT
AGCCAATAATGTCCTCTTGCCCTGTGCGCACACGTACCCCAACAGCGCGA
TTCGACTAGTCTAATTGGCTAATTGGTCTACGCTGTAGGTAAACTCTCTG
CTCGTCATGAAGCACACACATCCTGCAGACAGAGACAGGCTGTTCTGCAT
GTATTACACACCACGTACCTCGGTAGCACCCTTTAGCAGCAGTTAGACAC
GTCCTATGTGCTGCCTTTGAGACAAACAACAGTCTGTATAGTAGTGTCTA
CCGCTCTGCCTCGGTCCGTAGTTTGGTATACACCATAATACGGAGTACCA
GGTAGTACATATGATACGGGGGCGTACAGCAGTACTGCGTTCCCGTGGCG
GCGTACGGGTTGAGACCGGGCTGCGCTGCGACAAGAAGCTTCATGGACCC
ATCCCTCCCCGCCGACATGTCTGTCTATCGTTCGCCCGAGGTGTGCCTTT
TCTATTCTATCCTTCTTGATTTTGTTCTCCTTGCACGTGATAGCATAGCT
GGAAAAGCTCGTGAGTACCAAACTTCGACTTTAGCACGTTGACGAGGGAA
AGGGATGGCTGCACCCTTCTCGCGATGAAATCCAAGGCAAGCACCGCAGG
AGGAAGGTGGGGCCAAAAAAGAAACATAAAAAGAATTAAAAAGCCCCAGT
GTTTACCCCCTCCTGTGTGACCCCGGTTGGTTCTAGTTGTACAGAAAAAT
ACGCTGAACAAGTAAGTGTAGTACTCTAAAACACCGCGACGTGTAGTACA
CGTTCTCGCCTTGATCGGAAAGGGACTGTCGCCAAAATGAATGGGACAAA
AAAAAAACACACACACACACACACACACATTGCAATACTATAGCCCCCCC
CCCTGCCCAGCAAATAGTTCCAACCTTAACATACTTGTACATTTGTTTTG
GACTGAAGCAAGCGATCAAGGGGCTTTTAGCTACAATTTGCACATGTTCT
TCTGCATGGACCTATCTTGTCTTGTCTCGTCTTTTCTTTTCGTTCATGTT
TGTTTGGGACCCTGCCTGATCTCTGGCCTCCCCCACCCACCCCCGCCCTA
ACAACAATAACAACGCCGCGAACTCGCAAACATGAATGATGTCCAAGACG
AAGACGAAGTTGATACCCCTGAGGAACCGCTGTCGGAGGAGGATCTGAGC
GCGATGGAGGCTCTCCTGGACATACCCGACCTTACCGAGGTGAACCTAGA
CGTGGAGGTCAAGTCTTGGCTCGATGGCACGCCGGTGGGCGCCGTCTCGC
TATCTCCTGAGGTGTTCGGCGTGCCCGTGCGGAGAGACGTCGTGCACGAC
GTCGTTCGGTGGCAGCTGGCTAAGCGTAGGAGCGGCAATGGTCAGGTAAA
TGTAAATACATACTTCGGAATATGCTTCTGTGTGTGTGCGGTGACCCAAG
GTTGGAGTTTGTTGTGACCTGGAGGTTGGGGGTGTTATTGTACATACCTA
CTTCGTATAGTAGGTTTATCCCCTAATTGCGGAGTTTGTTCGACCAGATA
CAAAACGAGGCAACTAAATACTATGGAGGGATGTTGATTCGCTGCGATTG
GAATGTGGAAGTCGAATAGCGTTCGTTTTCGTGCAGGCGAAGGGAAGCTG
TGTAAGTGAACGAGACTTGGCCCGAAAGGGTGCCGTTATCGCCTCGGTCA
ACATGTTCAACATGTTCAGTTCAATCTGCATACGGAATGTACGCCGCAGC
AATGGTTTAATGGGATGAGTTAGCGGAAGCCCCGTCAAAATCCGTGAACA
TTCGATTGGTACATAAAAGTATCGAGCCATACAACAGATTCCACACAGAA
TCGTCCGACGGAAGACGGTATTCTAATCTACAGCAGCAGCGACAATTAGT
TTGAAGCAGATAAGCCTTGAAGCATGGCCGTCTCATGCCGTTCGCACCCC
CGCGTCCAACCGTGATTCGTCTTCATCGAATCAAATCAGACCAAGAGTAT
AGCGGAGGTTCGTGGGTCGGGGCGGAAGGTCCGGCCTCAGAAGGGGGGAG
GCATCGCACGCGCGGGGCACAGCCGCCCGCCGCACTGGAGAGGGGGCGCG
AAGGCGCACGGGCCGAGGAGGCGTGACTTTTCCTTCAAGCTCAACAAGAA
GTTCGTCAAGCTTGGCTTGAGGGTGAGAGGGTGGTTGCATCGTAGGGGAA
AAGGGCGAGAATCAGGCCGTGTTCGCGCGCGTATGCCCTGGCTGGACCTG
ACGCACCTCGGATGTTGTTTGTTGTTCTGCGGGTTGCTTTCGCGGGTTGC
TTTCGCGGGTTGCTTTCGCGGGTTGCTTTCGCGGGTTGGCGGGTTGCTTT
CGCGGGTTGCTTTCGCGGGTTACTTTCGCGGGTTACTTTCGCGAGTTGCT
TTCGCGGGCTGGTTCCGTTCCCTTTCCGTCTCCTTGCCCCCGACGGTGGG
CATATTTGTTTGCTCCCAAAATGACGTAGATACCGTACATAGGCATGCTT
CCGGCGGCGGATGAGTACGCTGGTTCGTTCTTTCGCGCTCTGGCTCCAGT
TGTGTATCTATGCTGTATCATATCTTCCATAATAGTTCAAGTAGAGAATC
TAGTACTCGCGTACTTGTAGTATTATAGTCATTTTTGCCTGCGTGTGCTT
GCTTGTTGATCGGCCCGACTCAACTGGGCCGCACACCGTATGATAGGTGG
CATTGTCAGCGAGACTTCGGGAGGGACAGCTGATGGTGGTCGACAACCTC
AAGATCGATTCGTTCAGCACGGCCGAGATGATCAAGATTATCAAGGTAGA
TACCCTACAGTAAACGTCCACCGCGTGCGAAGGCATCGTCACGGTGCTCA
GACCATGGTGTCATTTTTGCCTTCCCTATGCATACATACATAGATGCAAG
CTCTCCCATTTGTTGTTCCTTGCCGGGCTCGTGTCAGCGTGTCACCCAAA
TCGGATATCGATTATTTTTATTGTTCAGGTCGTGCTGAAGAGGACAGGCA
GACCAGGGCAAAAGAAAAACGCGAACTCGAGTATCTGCAATACTGGAAGT
TCTTTCTCTGTAATATTGCAAGTACAGCGCCAATAACCACTAACTACACC
CGGGTTGCCTTGGCGGTAGACTGCTGTACCAATAAAAAGTATCGGCTTTT
TTTTTCTACCGAAAACTCAGCCCGACCCACGCCTTCAAAAGCCTGCTTCC
TTTACATTCCTAACTGCTGTAACCCCATTGATGTGCGCGATTCTGTCATT
GACTCGGTTTTGTGCGCCAGGCACGAGGCATCGACGGCGAAGTGACGTTC
GTTGTGGGAGGGGATCCTCAGGCAGAGTTCATGCGATCCACCACCAACAT
CGTCGGCGTCAAGGTCTTGGCCGCAAGGGTAAGAGTTTTGAGATAACTAC
GATAAATAGGGATTTGCCTGCAGAATTTGGCAGAACTGAAACAAGTGACC
CTTCGCTCATGGCACATATGCTAACTGCTCAAATGCATGCTAGAGCTGCG
CGGCGTGTGATGAGTAGAGCATGCGGGCTAGGGGTCTCTCTTGCCGCTGT
TCTGGTGTGGAACAAAGAACAAAGATCCCATGTTTTCCGTTATTCTCGTT
TTTTTTTTGCCGTCGTGACTCTTTCGTTTCGCCCCGTCAGCGTTACGTTA
CGTATAACAACAGCAGTTACAGCAGTTACAGCAGTTCAATGCTCACCCCA
TTCTCGTCCCACCGTGCTCTCTTGTGTGCCCTTTTTTTCGTTTTCATGGC
TAACGCTAACGCTAACGTTGTGTGGTCGCCCAGGGTGCCAACGTGTACGA
CATCGTCAAAAGGCCCAACTTGGTGCTGAGCCAAGATGCCGTCGAACACT
TGGAAGAGGTCCTGATACCGCAATAGGATTTTTGTTTTCGAGTATGTTCT
GTTGTTGCTCATGCTCTCGCTCTTGCTCTCGTCGCGGGTGAAGAAGGGTG
ACAGGCATAGGTTGAGGGTACCGGAAGATATTTTTTTATACAAGTATATT
GTCCCCGAAGTAGCGGGCTGAGTTGATGCGGAGGTCAGGTCGATCGATTG
AGGTTTGGCATCGATGGCCGTCCGTACAATGGTGGTACTGCGATGCTGTC
TTTTACGGTCCATGTTGCCCCCAACCTCAGTGATACGCATGCAAGACTCC
GTGTGTTGTTGTCAAGAGCACAGGGTTGCGGGTGTTTTTTTCGGTGCAGG
CTTCAAGGCTTCGAATGCAACACCGACGCTGTTTTGGTGTGGCGATGGGA
ATAAGTGCATCCGTCTAGAGTAGTAGTAGGGCGGTCACGTTACGGAATCA
TCATCATTCGTGACACCATACATCATTACTGCTGTGTTGCTTTCATGCTG
AATCTGCAAGTCGAAGCTCGTCTGTCCTTCCCTTCGAGGACGGATCGGCA
CGAAAGATAGCGTTTAAGGGTGCCTGAGCAGAGATCGGAAAGGCTTCCAT
GTTGAGACGCCAGCACGTGCTACTGCTGTGGTACATTTGCCGCGGCAGGG
AGCCCCCGGAGAAGCTACCGATGCAATTAAATCAGAT
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Coding sequence (CDS) from alignment at C-linearis_contig74:684572..689758+

>mRNA_C-linearis_contig74.15043.1 ID=mRNA_C-linearis_contig74.15043.1|Name=mRNA_C-linearis_contig74.15043.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2238bp|location=Sequence derived from alignment at C-linearis_contig74:684572..689758+ (Chordaria linearis ClinC8C monoicous)
ATGTTACGCACCTTTCCTCGCTCGATCTGTCAAGCGGCGCGTCCAGGCCG
ACCATCAAGCGGCAAAGCTTGCGCTGCCAGCATCCTCAGAGAACGAGCAA
CCCAGCCGAGCTCGACGGCCGGACGATCAGTCACATCATGGGCTTCGACA
TCGACATCGCGGCCAAGGAGTGCTGGATCTGCTGGACAGCAGCAAATGCC
TTCCTTGTCGATAGCAATGAAGGTGCTGGTTAGGTCCAAGTCCTCGATGT
CTAGTTCGGCTGAGCACGGGTGGGAGCACGAAGGCCTTCCGGTGGCGCCG
TTGCTCCGCGGTAGCCAGGAGCTGCCCGCTAACCTCAAGCTCGCGCAGGA
GGCCTGGCCGGAGCAGGGAGAAGAGGCGCAGGGAGATGATGTTACGCACC
TTTCCTCGCTCGATCTGTCAAGCGGCGCGTCCAGGCCGACCATCAAGCGG
CAAAGCTTGCGCTGCCAGCATCCTCAGAGAACGAGCAACCCAGCCGAGCT
CGACGGCCGGACGATCAGTCACATCATGGGCTTCGACATCGACATCGCGG
CCAAGGAGTGCTGGATCTGCTGGACAGCAGCAAATGCCTTCCTTGTCGAT
AGCAATGAAGGTGCTGGTTAGGTCCAAGTCCTCGATGTCTAGTTCGGCTG
AGCACGGGTGGGAGCACGAAGGCCTTCCGGTGGCGCCGTTGCTCCGCGGT
AGCCAGGAGCTGCCCGCTAACCTCAAGCTCGCGCAGGAGGCCTGGCCGGA
GCAGGGAGAAGAGGCGCAGGGAGATGACGAAGACGAAGTTGATACCCCTG
AGGAACCGCTGTCGGAGGAGGATCTGAGCGCGATGGAGGCTCTCCTGGAC
ATACCCGACCTTACCGAGGTGAACCTAGACGTGGAGGTCAAGTCTTGGCT
CGATGGCACGCCGGTGGGCGCCGTCTCGCTATCTCCTGAGGTGTTCGGCG
TGCCCGTGCGGAGAGACGTCGTGCACGACGTCGTTCGGTGGCAGCTGGCT
AAGCGTAGGAGCGGCAATGGTCAGACGAAGACGAAGTTGATACCCCTGAG
GAACCGCTGTCGGAGGAGGATCTGAGCGCGATGGAGGCTCTCCTGGACAT
ACCCGACCTTACCGAGGTGAACCTAGACGTGGAGGTCAAGTCTTGGCTCG
ATGGCACGCCGGTGGGCGCCGTCTCGCTATCTCCTGAGGTGTTCGGCGTG
CCCGTGCGGAGAGACGTCGTGCACGACGTCGTTCGGTGGCAGCTGGCTAA
GCGTAGGAGCGGCAATGGTCAGACCAAGAGTATAGCGGAGGTTCGTGGGT
CGGGGCGGAAGGTCCGGCCTCAGAAGGGGGGAGGCATCGCACGCGCGGGG
CACAGCCGCCCGCCGCACTGGAGAGGGGGCGCGAAGGCGCACGGGCCGAG
GAGGCGTGACTTTTCCTTCAAGCTCAACAAGAAGTTCGTCAAGCTTGGCT
TGAGGACCAAGAGTATAGCGGAGGTTCGTGGGTCGGGGCGGAAGGTCCGG
CCTCAGAAGGGGGGAGGCATCGCACGCGCGGGGCACAGCCGCCCGCCGCA
CTGGAGAGGGGGCGCGAAGGCGCACGGGCCGAGGAGGCGTGACTTTTCCT
TCAAGCTCAACAAGAAGTTCGTCAAGCTTGGCTTGAGGGTGGCATTGTCA
GCGAGACTTCGGGAGGGACAGCTGATGGTGGTCGACAACCTCAAGATCGA
TTCGTTCAGCACGGCCGAGATGATCAAGATTATCAAGGTGGCATTGTCAG
CGAGACTTCGGGAGGGACAGCTGATGGTGGTCGACAACCTCAAGATCGAT
TCGTTCAGCACGGCCGAGATGATCAAGATTATCAAGGCACGAGGCATCGA
CGGCGAAGTGACGTTCGTTGTGGGAGGGGATCCTCAGGCAGAGTTCATGC
GATCCACCACCAACATCGTCGGCGTCAAGGTCTTGGCCGCAAGGGCACGA
GGCATCGACGGCGAAGTGACGTTCGTTGTGGGAGGGGATCCTCAGGCAGA
GTTCATGCGATCCACCACCAACATCGTCGGCGTCAAGGTCTTGGCCGCAA
GGGGTGCCAACGTGTACGACATCGTCAAAAGGCCCAACTTGGTGCTGAGC
CAAGATGCCGTCGAACACTTGGAAGAGGTCCTGATACCGCAATAGGGTGC
CAACGTGTACGACATCGTCAAAAGGCCCAACTTGGTGCTGAGCCAAGATG
CCGTCGAACACTTGGAAGAGGTCCTGATACCGCAATAG
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