mRNA_C-linearis_contig74.15031.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig74.15031.1
Unique NamemRNA_C-linearis_contig74.15031.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig74.15031.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig74contigC-linearis_contig74:600842..601368 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size241
Cds size237
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930406.9639916-CDS-C-linearis_contig74:600841..6009431622930406.9639916-CDS-C-linearis_contig74:600841..600943Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 600842..600943 +
1690881053.8918695-CDS-C-linearis_contig74:600841..6009431690881053.8918695-CDS-C-linearis_contig74:600841..600943Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 600842..600943 +
1622930406.9830773-CDS-C-linearis_contig74:601231..6013661622930406.9830773-CDS-C-linearis_contig74:601231..601366Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 601232..601366 +
1690881053.9011369-CDS-C-linearis_contig74:601231..6013661690881053.9011369-CDS-C-linearis_contig74:601231..601366Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 601232..601366 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig74.15031.1prot_C-linearis_contig74.15031.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig74 600842..601366 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig74.15031.1

>prot_C-linearis_contig74.15031.1 ID=prot_C-linearis_contig74.15031.1|Name=mRNA_C-linearis_contig74.15031.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=79bp
GIAPRLRRKTQTPSAWDSWLVGADLRGLNQGSFQISGQERQWTMLMTLLA
LADRESGARTESEDSVPGAEAEVTGGGET
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mRNA from alignment at C-linearis_contig74:600842..601368+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig74.15031.1 ID=mRNA_C-linearis_contig74.15031.1|Name=mRNA_C-linearis_contig74.15031.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=527bp|location=Sequence derived from alignment at C-linearis_contig74:600842..601368+ (Chordaria linearis ClinC8C monoicous)
GGAATTGCGCCGCGTCTCCGCCGAAAAACACAAACCCCCTCTGCATGGGA
TTCATGGTTGGTTGGAGCTGACCTTCGCGGGCTGAACCAGGGCAGCTTTC
AGGTTCGTTCCTGCTCAGGCCGCCGCTTGCGTGAGCTCCTACAAACAATC
CCTCTTCAATGCCTGGACAATCAACTGTTGTGGTCTCTCCCAAAAAGCAA
TTCTCCGGGGCGTCTCTGTCTTCAGGTACCGGCCTTCACAGCAACGTACA
AGGGGCCGGTGTTACGTGTTGTCACCTGCGTGCATTTGATCGGGCTTGAA
TCTGATACCGATAAGGTCCAAGAGGCCAAGCGGCTTTTGTCCTAGAAGGG
AAAGTCTAGACTGTCATCCTCATGGCGCCCCACTTGCCAGATATCTGGAC
AAGAGAGACAATGGACGATGCTGATGACGCTGCTAGCGCTTGCGGATCGG
GAGTCGGGAGCACGGACGGAGAGCGAGGACTCCGTACCAGGGGCGGAGGC
TGAAGTCACGGGAGGAGGCGAGACAGA
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Coding sequence (CDS) from alignment at C-linearis_contig74:600842..601368+

>mRNA_C-linearis_contig74.15031.1 ID=mRNA_C-linearis_contig74.15031.1|Name=mRNA_C-linearis_contig74.15031.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at C-linearis_contig74:600842..601368+ (Chordaria linearis ClinC8C monoicous)
GGAATTGCGCCGCGTCTCCGCCGAAAAACACAAACCCCCTCTGCATGGGA
TTCATGGTTGGTTGGAGCTGACCTTCGCGGGCTGAACCAGGGCAGCTTTC
AGGGAATTGCGCCGCGTCTCCGCCGAAAAACACAAACCCCCTCTGCATGG
GATTCATGGTTGGTTGGAGCTGACCTTCGCGGGCTGAACCAGGGCAGCTT
TCAGATATCTGGACAAGAGAGACAATGGACGATGCTGATGACGCTGCTAG
CGCTTGCGGATCGGGAGTCGGGAGCACGGACGGAGAGCGAGGACTCCGTA
CCAGGGGCGGAGGCTGAAGTCACGGGAGGAGGCGAGACAATATCTGGACA
AGAGAGACAATGGACGATGCTGATGACGCTGCTAGCGCTTGCGGATCGGG
AGTCGGGAGCACGGACGGAGAGCGAGGACTCCGTACCAGGGGCGGAGGCT
GAAGTCACGGGAGGAGGCGAGACA
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