mRNA_C-linearis_contig74.15030.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig74.15030.1
Unique NamemRNA_C-linearis_contig74.15030.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig74.15030.1 vs. uniprot
Match: A0A6H5JT31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT31_9PHAE)

HSP 1 Score: 173 bits (438), Expect = 1.700e-46
Identity = 92/176 (52.27%), Postives = 116/176 (65.91%), Query Frame = 1 
Query:  157 GCFS-SEDVDPIAASLLNGAAALHGGRLGTPMKTKGDGACLMNGLVAGALNMKCSEEWSGDGPALALRAAAVRTALANFQKFMSPDGYLEEYCSGQLFDSAEHDRVVGLTGGYQFPMDMSVEMARLYYLCAVRNITGPYSTCQGACLPWVAEVLGLKVRVVHPGITVADVGATWKK 681
            GCF+  ED+D +A+  L GAA   GG +G P+  +G GAC    L +GALN +CS      G ALALR  A+R AL   ++F+S DGYL EY SG LFD+ EHD V+ L G   +PM+MS ++ARLYYLCA+R+  GP+   Q A LPW AEVLGLKVRV HP  +V+ VG  W K
Sbjct:   67 GCFNLPEDIDKLASRCLEGAATSDGGGVGVPVVNEGKGACFWIALASGALNTRCST----GGAALALRTGAMRMALLKCEEFLSADGYLAEYRSGDLFDTKEHDMVMKLAGRV-WPMNMSADVARLYYLCAIRSNCGPFKYSQQAVLPWAAEVLGLKVRVFHPAASVSLVGGKWNK 237
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BLAST of mRNA_C-linearis_contig74.15030.1 vs. uniprot
Match: D7G0G8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0G8_ECTSI)

HSP 1 Score: 162 bits (411), Expect = 3.300e-45
Identity = 92/198 (46.46%), Postives = 121/198 (61.11%), Query Frame = 1 
Query:   91 LSLGHFDTADCYTIHWSSNGSFGCFS-SEDVDPIAASLLNGAAALHGGRLGTPMKTKGDGACLMNGLVAGALNMKCSEEWSGDGPALALRAAAVRTALANFQKFMSPDGYLEEYCSGQLFDSAEHDRVVGLTGGYQFPMDMSVEMARLYYLCAVRNITGPYSTCQGACLPWVAEVLGLKVRVVHPGITVADVGATWKK 681
            ++ G  D    + I+    G  GCF+  ED D +A+  L GAA   GG++G P+   G GAC+   L +GAL+ +CS      G ALALR AA+R AL    +F+S DGYL EY S  LFD  EHD V+ L G  ++  ++S ++AR+YYLCAVRN  GP+   Q A +PW AEVLGLKVRV HP  +V+ VG  W K
Sbjct:   37 MAAGLLDPFAGFKINPIRQGDTGCFNLPEDTDELASRCLEGAATSDGGQVGIPVANDGLGACVWIALASGALSERCST----GGAALALRTAAMRMALLKSPEFLSRDGYLAEYRSPDLFDLKEHDMVLKLAGR-EWTENISPDVARMYYLCAVRNNCGPFKYSQQAVIPWAAEVLGLKVRVFHPAASVSPVGGKWNK 229
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig74.15030.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JT31_9PHAE1.700e-4652.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0G8_ECTSI3.300e-4546.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig74contigC-linearis_contig74:591230..593049 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size960
Cds size693
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig74.15030.1prot_C-linearis_contig74.15030.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig74 592214..593028 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930415.993733-UTR-C-linearis_contig74:591229..5913761622930415.993733-UTR-C-linearis_contig74:591229..591376Chordaria linearis ClinC8C monoicousUTRC-linearis_contig74 591230..591376 +
1690881058.455704-UTR-C-linearis_contig74:591229..5913761690881058.455704-UTR-C-linearis_contig74:591229..591376Chordaria linearis ClinC8C monoicousUTRC-linearis_contig74 591230..591376 +
1622930416.008384-UTR-C-linearis_contig74:592114..5922131622930416.008384-UTR-C-linearis_contig74:592114..592213Chordaria linearis ClinC8C monoicousUTRC-linearis_contig74 592115..592213 +
1690881058.46697-UTR-C-linearis_contig74:592114..5922131690881058.46697-UTR-C-linearis_contig74:592114..592213Chordaria linearis ClinC8C monoicousUTRC-linearis_contig74 592115..592213 +
1622930416.0546243-UTR-C-linearis_contig74:593028..5930491622930416.0546243-UTR-C-linearis_contig74:593028..593049Chordaria linearis ClinC8C monoicousUTRC-linearis_contig74 593029..593049 +
1690881058.5101428-UTR-C-linearis_contig74:593028..5930491690881058.5101428-UTR-C-linearis_contig74:593028..593049Chordaria linearis ClinC8C monoicousUTRC-linearis_contig74 593029..593049 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930416.021634-CDS-C-linearis_contig74:592213..5926101622930416.021634-CDS-C-linearis_contig74:592213..592610Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 592214..592610 +
1690881058.4799862-CDS-C-linearis_contig74:592213..5926101690881058.4799862-CDS-C-linearis_contig74:592213..592610Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 592214..592610 +
1622930416.0385315-CDS-C-linearis_contig74:592732..5930281622930416.0385315-CDS-C-linearis_contig74:592732..593028Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 592733..593028 +
1690881058.4975624-CDS-C-linearis_contig74:592732..5930281690881058.4975624-CDS-C-linearis_contig74:592732..593028Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 592733..593028 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig74.15030.1

>prot_C-linearis_contig74.15030.1 ID=prot_C-linearis_contig74.15030.1|Name=mRNA_C-linearis_contig74.15030.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=231bp
MKTKGDGACLMNGLVAGALNMKCSEEWSGDGPALALRAAAVRTALANFQK
FMSPDGYLEEYCSGQLFDSAEHDRVVGLTGGYQFPMDMSVEMARLYYLCA
VRNITGPYSTCQGACLPWVAEVLGLKVRVVHPGITVADVGATWKKAILVG
KKATAMLETAIATARETCRVIFLVVSQWISLWSTSSFWKLNRVVREVRLW
NLCRTLDLTNAEFEDFGVFLRLRGCRKRTS*
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mRNA from alignment at C-linearis_contig74:591230..593049+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig74.15030.1 ID=mRNA_C-linearis_contig74.15030.1|Name=mRNA_C-linearis_contig74.15030.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1820bp|location=Sequence derived from alignment at C-linearis_contig74:591230..593049+ (Chordaria linearis ClinC8C monoicous)
GCTGCTATTTTCCACAGCTGGGGGCTCCGTGGAGATAAATGTGTTCTCGG
GCGGATGGTTTTGTCTATCTCCCTCTCTCTCCCTCTCTGACTTAGCCTGG
GGCATTTCGACACAGCTGACTGCTACACCATACACTGGTCTTCCAATGTG
AGCATGGGGCATCTGAGTTGGATCCGTTTGTTGCATGCCATTGGGGGTGC
AACACGCCTGTGTGATGGTGCTGTCGCAGCTGTCTCACAGCACATGCTCT
TTGGTCTGTGCGCTACGCAGTGCAACGCACTTTGTGTGCGTTGCCGCATA
AGTCTGCAACAAGATTTGCAAGCAAGATTTTGACCAGCTTTCGAATGATC
GTTGCATGCATACCATGTGCGGTTGCAGCGCGAAGCAATGTACAGCACGA
GCCGAAAACCTGTGTGGTCGGCACCATTTTGAATTTTTGAATGTTCATGA
ACCACACGGGCGATCTTGTTTTTCTCCGTCACCCGCGAACACGACTCCGT
TGTCGTATATGATGCATAGACCTATATACATATGTAAAAAAAAATCATTA
ACGCATGCAACAGGGGGGGAGGGAAAGGTCGCCAACGCCGCGGTGGTGGG
GGGAAAAGGGCTAAGAAAGGCCGGGGTCCGAGCCAGGCTAAAATTCGCAG
CCATACCGGGACGGCGGCAACCGGGACGGCGGCGGCGGCGATCTGTCGTG
GTGTCGAGAGAGCGGACATAGACGTGTGTAACATGCAGCTTCTCGAGATG
CCACGTCTTGAAGTCATGTTTGCCGTAAGTTCTCTCCTTTGACGTATTCG
TTCAAGTGCTGGGTTGGACCTACCCTTTTCGTACCGATAGCCGAAGCGGT
AATGCAAACTCAACGTTCTTGCCGCTGACTGCCAGGGGAGCTTCGGTTGT
TTCAGCTCCGAGGATGTCGACCCCATCGCTGCTTCTCTGCTGAACGGGGC
GGCAGCATTGCATGGTGGACGGTTGGGAACACCTATGAAAACCAAGGGTG
ATGGCGCGTGTCTCATGAACGGATTAGTAGCGGGGGCCCTCAACATGAAG
TGTTCGGAGGAGTGGTCGGGAGATGGGCCCGCGCTTGCTCTTCGTGCCGC
TGCTGTTCGAACCGCCCTCGCGAATTTTCAGAAATTTATGAGCCCCGACG
GATACCTTGAGGAATATTGTTCTGGGCAGCTGTTCGATAGTGCGGAACAC
GACCGCGTCGTCGGCCTCACGGGCGGTTATCAGTTTCCCATGGACATGTC
GGTCGAAATGGCGAGGCTGTACTACCTCTGCGCCGTCCGGAACATCACTG
GACCGTACAGCACTTGCCAGGGAGCGTGCCTGCCGTGGGTGGCCGAGGTT
CTTGGCCTCAAAGTTCGGGTCGTTCACCCAGGTGTGTACTGCAAGTATTA
CGTCTAGTTAGATACCTTTCACCTCTCCTCTCTTGAAATAAACTTATGGT
CGTCGCAAAACAAAAGGCGCTGATGACCGCGTCTTGTATTACCTACGACA
CAGGAATAACGGTTGCGGACGTGGGCGCTACATGGAAGAAAGCGATTCTA
GTGGGGAAGAAAGCGACAGCGATGCTAGAGACAGCGATAGCGACGGCGAG
GGAGACGTGCCGGGTGATTTTTCTGGTTGTGAGCCAATGGATATCGTTAT
GGAGTACGAGCAGCTTTTGGAAGCTGAACAGGGTGGTCAGGGAGGTTCGA
CTCTGGAATTTATGTCGAACCCTGGATTTAACGAATGCAGAATTTGAGGA
TTTTGGTGTTTTTCTGAGGCTGCGGGGTTGCAGAAAGCGTACGAGCTAGG
CTGCCGAGTACGTCGCAAAT
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Coding sequence (CDS) from alignment at C-linearis_contig74:591230..593049+

>mRNA_C-linearis_contig74.15030.1 ID=mRNA_C-linearis_contig74.15030.1|Name=mRNA_C-linearis_contig74.15030.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1386bp|location=Sequence derived from alignment at C-linearis_contig74:591230..593049+ (Chordaria linearis ClinC8C monoicous)
ATGAAAACCAAGGGTGATGGCGCGTGTCTCATGAACGGATTAGTAGCGGG
GGCCCTCAACATGAAGTGTTCGGAGGAGTGGTCGGGAGATGGGCCCGCGC
TTGCTCTTCGTGCCGCTGCTGTTCGAACCGCCCTCGCGAATTTTCAGAAA
TTTATGAGCCCCGACGGATACCTTGAGGAATATTGTTCTGGGCAGCTGTT
CGATAGTGCGGAACACGACCGCGTCGTCGGCCTCACGGGCGGTTATCAGT
TTCCCATGGACATGTCGGTCGAAATGGCGAGGCTGTACTACCTCTGCGCC
GTCCGGAACATCACTGGACCGTACAGCACTTGCCAGGGAGCGTGCCTGCC
GTGGGTGGCCGAGGTTCTTGGCCTCAAAGTTCGGGTCGTTCACCCAGATG
AAAACCAAGGGTGATGGCGCGTGTCTCATGAACGGATTAGTAGCGGGGGC
CCTCAACATGAAGTGTTCGGAGGAGTGGTCGGGAGATGGGCCCGCGCTTG
CTCTTCGTGCCGCTGCTGTTCGAACCGCCCTCGCGAATTTTCAGAAATTT
ATGAGCCCCGACGGATACCTTGAGGAATATTGTTCTGGGCAGCTGTTCGA
TAGTGCGGAACACGACCGCGTCGTCGGCCTCACGGGCGGTTATCAGTTTC
CCATGGACATGTCGGTCGAAATGGCGAGGCTGTACTACCTCTGCGCCGTC
CGGAACATCACTGGACCGTACAGCACTTGCCAGGGAGCGTGCCTGCCGTG
GGTGGCCGAGGTTCTTGGCCTCAAAGTTCGGGTCGTTCACCCAGGAATAA
CGGTTGCGGACGTGGGCGCTACATGGAAGAAAGCGATTCTAGTGGGGAAG
AAAGCGACAGCGATGCTAGAGACAGCGATAGCGACGGCGAGGGAGACGTG
CCGGGTGATTTTTCTGGTTGTGAGCCAATGGATATCGTTATGGAGTACGA
GCAGCTTTTGGAAGCTGAACAGGGTGGTCAGGGAGGTTCGACTCTGGAAT
TTATGTCGAACCCTGGATTTAACGAATGCAGAATTTGAGGATTTTGGTGT
TTTTCTGAGGCTGCGGGGTTGCAGAAAGCGTACGAGCTAGGAATAACGGT
TGCGGACGTGGGCGCTACATGGAAGAAAGCGATTCTAGTGGGGAAGAAAG
CGACAGCGATGCTAGAGACAGCGATAGCGACGGCGAGGGAGACGTGCCGG
GTGATTTTTCTGGTTGTGAGCCAATGGATATCGTTATGGAGTACGAGCAG
CTTTTGGAAGCTGAACAGGGTGGTCAGGGAGGTTCGACTCTGGAATTTAT
GTCGAACCCTGGATTTAACGAATGCAGAATTTGAGGATTTTGGTGTTTTT
CTGAGGCTGCGGGGTTGCAGAAAGCGTACGAGCTAG
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