mRNA_C-linearis_contig74.15029.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig74.15029.1
Unique NamemRNA_C-linearis_contig74.15029.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig74.15029.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig74contigC-linearis_contig74:589859..590375 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size495
Cds size492
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig74.15029.1prot_C-linearis_contig74.15029.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig74 589861..590375 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930406.8716326-UTR-C-linearis_contig74:589858..5898601622930406.8716326-UTR-C-linearis_contig74:589858..589860Chordaria linearis ClinC8C monoicousUTRC-linearis_contig74 589859..589860 +
1690881053.8593888-UTR-C-linearis_contig74:589858..5898601690881053.8593888-UTR-C-linearis_contig74:589858..589860Chordaria linearis ClinC8C monoicousUTRC-linearis_contig74 589859..589860 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930406.88932-CDS-C-linearis_contig74:589860..5901671622930406.88932-CDS-C-linearis_contig74:589860..590167Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 589861..590167 +
1690881053.8702648-CDS-C-linearis_contig74:589860..5901671690881053.8702648-CDS-C-linearis_contig74:589860..590167Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 589861..590167 +
1622930406.904376-CDS-C-linearis_contig74:590190..5903751622930406.904376-CDS-C-linearis_contig74:590190..590375Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 590191..590375 +
1690881053.8802402-CDS-C-linearis_contig74:590190..5903751690881053.8802402-CDS-C-linearis_contig74:590190..590375Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 590191..590375 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig74.15029.1

>prot_C-linearis_contig74.15029.1 ID=prot_C-linearis_contig74.15029.1|Name=mRNA_C-linearis_contig74.15029.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=164bp
MMACTASSAFSSLPRVQHGAEREGRLWEQMALKTLRLVWTVDRFGGVLCY
SGGILSFQVLFRECTAAVVRHGLLLLLLLLLQPAISQDTCSETQLLRWWE
CTFAAEQNQSTHKGTWHSTSQRCMYVYVRALLATYLPSMKYDDTCLVPTL
PFHWYYCTTNVCVP
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mRNA from alignment at C-linearis_contig74:589859..590375+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig74.15029.1 ID=mRNA_C-linearis_contig74.15029.1|Name=mRNA_C-linearis_contig74.15029.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=517bp|location=Sequence derived from alignment at C-linearis_contig74:589859..590375+ (Chordaria linearis ClinC8C monoicous)
GGATGATGGCCTGCACTGCCTCGTCCGCATTTTCCTCCCTGCCCAGAGTT
CAACACGGCGCGGAAAGAGAGGGGAGGTTGTGGGAGCAGATGGCTTTGAA
AACGCTGCGTTTGGTGTGGACCGTTGATAGATTCGGTGGCGTCTTATGCT
ATTCGGGAGGAATACTCTCTTTTCAAGTCCTTTTCCGGGAGTGTACAGCA
GCAGTAGTACGGCATGGGTTGCTCTTGCTCTTGCTCTTGCTCTTGCAGCC
GGCTATCTCGCAGGACACGTGTTCCGAAACCCAGCTGCTTCGTTGGTGGG
AATGCACGTTTGTTTGGGCTCTCGTCGAATAATTGCAGCAGAACAGAACC
AATCCACCCACAAAGGGACATGGCATTCCACCTCTCAGAGATGTATGTAT
GTATACGTGCGTGCCCTCTTGGCAACGTATTTGCCCTCCATGAAATACGA
CGACACATGTTTGGTACCGACGCTACCATTCCACTGGTACTACTGCACGA
CGAACGTTTGTGTACCA
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Coding sequence (CDS) from alignment at C-linearis_contig74:589859..590375+

>mRNA_C-linearis_contig74.15029.1 ID=mRNA_C-linearis_contig74.15029.1|Name=mRNA_C-linearis_contig74.15029.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=984bp|location=Sequence derived from alignment at C-linearis_contig74:589859..590375+ (Chordaria linearis ClinC8C monoicous)
ATGATGGCCTGCACTGCCTCGTCCGCATTTTCCTCCCTGCCCAGAGTTCA
ACACGGCGCGGAAAGAGAGGGGAGGTTGTGGGAGCAGATGGCTTTGAAAA
CGCTGCGTTTGGTGTGGACCGTTGATAGATTCGGTGGCGTCTTATGCTAT
TCGGGAGGAATACTCTCTTTTCAAGTCCTTTTCCGGGAGTGTACAGCAGC
AGTAGTACGGCATGGGTTGCTCTTGCTCTTGCTCTTGCTCTTGCAGCCGG
CTATCTCGCAGGACACGTGTTCCGAAACCCAGCTGCTTCGTTGGTGGGAA
TGCACGTATGATGGCCTGCACTGCCTCGTCCGCATTTTCCTCCCTGCCCA
GAGTTCAACACGGCGCGGAAAGAGAGGGGAGGTTGTGGGAGCAGATGGCT
TTGAAAACGCTGCGTTTGGTGTGGACCGTTGATAGATTCGGTGGCGTCTT
ATGCTATTCGGGAGGAATACTCTCTTTTCAAGTCCTTTTCCGGGAGTGTA
CAGCAGCAGTAGTACGGCATGGGTTGCTCTTGCTCTTGCTCTTGCTCTTG
CAGCCGGCTATCTCGCAGGACACGTGTTCCGAAACCCAGCTGCTTCGTTG
GTGGGAATGCACGTTTGCAGCAGAACAGAACCAATCCACCCACAAAGGGA
CATGGCATTCCACCTCTCAGAGATGTATGTATGTATACGTGCGTGCCCTC
TTGGCAACGTATTTGCCCTCCATGAAATACGACGACACATGTTTGGTACC
GACGCTACCATTCCACTGGTACTACTGCACGACGAACGTTTGTGTACCAT
TGCAGCAGAACAGAACCAATCCACCCACAAAGGGACATGGCATTCCACCT
CTCAGAGATGTATGTATGTATACGTGCGTGCCCTCTTGGCAACGTATTTG
CCCTCCATGAAATACGACGACACATGTTTGGTACCGACGCTACCATTCCA
CTGGTACTACTGCACGACGAACGTTTGTGTACCA
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