mRNA_C-linearis_contig74.15025.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig74.15025.1
Unique NamemRNA_C-linearis_contig74.15025.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig74.15025.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig74contigC-linearis_contig74:552544..553511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size923
Cds size492
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig74.15025.1prot_C-linearis_contig74.15025.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig74 552635..553171 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930406.7563577-UTR-C-linearis_contig74:552543..5526341622930406.7563577-UTR-C-linearis_contig74:552543..552634Chordaria linearis ClinC8C monoicousUTRC-linearis_contig74 552544..552634 +
1690881053.8180528-UTR-C-linearis_contig74:552543..5526341690881053.8180528-UTR-C-linearis_contig74:552543..552634Chordaria linearis ClinC8C monoicousUTRC-linearis_contig74 552544..552634 +
1622930406.8226955-UTR-C-linearis_contig74:553171..5535111622930406.8226955-UTR-C-linearis_contig74:553171..553511Chordaria linearis ClinC8C monoicousUTRC-linearis_contig74 553172..553511 +
1690881053.8489048-UTR-C-linearis_contig74:553171..5535111690881053.8489048-UTR-C-linearis_contig74:553171..553511Chordaria linearis ClinC8C monoicousUTRC-linearis_contig74 553172..553511 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930406.7827444-CDS-C-linearis_contig74:552634..5530251622930406.7827444-CDS-C-linearis_contig74:552634..553025Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 552635..553025 +
1690881053.829143-CDS-C-linearis_contig74:552634..5530251690881053.829143-CDS-C-linearis_contig74:552634..553025Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 552635..553025 +
1622930406.8061657-CDS-C-linearis_contig74:553070..5531711622930406.8061657-CDS-C-linearis_contig74:553070..553171Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 553071..553171 +
1690881053.8388274-CDS-C-linearis_contig74:553070..5531711690881053.8388274-CDS-C-linearis_contig74:553070..553171Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 553071..553171 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig74.15025.1

>prot_C-linearis_contig74.15025.1 ID=prot_C-linearis_contig74.15025.1|Name=mRNA_C-linearis_contig74.15025.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=164bp
MPGGAWCAATYVCSRLLLYFGIGLCSGGRDRPVLRPSASEVLGVDMTARH
RSGFFLLCIFVKDQGSRKMWLSSRALTIYMGANPYMAVAWVFRGFGPMEP
FVLHDKHGRCGSGGLRELNVAQGVALLGGGVFVTVKLERNLAGRQVEARV
VPVACHTMGGYIR*
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mRNA from alignment at C-linearis_contig74:552544..553511+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig74.15025.1 ID=mRNA_C-linearis_contig74.15025.1|Name=mRNA_C-linearis_contig74.15025.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=968bp|location=Sequence derived from alignment at C-linearis_contig74:552544..553511+ (Chordaria linearis ClinC8C monoicous)
GCACGGGCATAGGTACGGCGACTCCTACTGATTGTTGGCGCCGGCAGCGG
AGCGTGACGGCGTGTGTTGTGGCCCTCGGGTCATTTCCTAGATGCCAGGT
GGTGCTTGGTGTGCTGCTACATACGTCTGCTCTAGGCTCCTCCTCTACTT
TGGGATCGGGCTCTGCTCTGGAGGAAGGGATAGACCCGTGTTGCGGCCCT
CGGCGAGCGAGGTTCTTGGGGTGGATATGACTGCCCGACATCGGTCAGGG
TTCTTTCTTCTCTGCATTTTTGTCAAGGATCAAGGATCAAGGAAAATGTG
GCTCTCGTCCAGGGCCCTGACAATTTACATGGGTGCCAACCCATATATGG
CGGTGGCTTGGGTGTTCCGGGGGTTCGGCCCAATGGAACCTTTTGTCTTG
CACGACAAGCACGGCCGCTGTGGCAGTGGCGGCCTTAGAGAGCTGAACGT
TGCGCAAGGTGTCGCTCTTTTGGGGGGCGGGGGTGGACATGTGTACATGG
CATCGTTCTCGTGGAGGGTCGGGAAAGTTTTTGTCACCGTCAAGCTTGAA
CGAAATCTCGCAGGGCGCCAAGTCGAAGCGCGTGTTGTACCAGTAGCATG
CCATACAATGGGTGGCTACATTCGATAGCGGCTGCTCTATTTAGATGCGA
GTGAGATAGCGATGAAGGCAGGCACCAGAGGTAACTTTTGATGCGTGGGT
GTTGCTGCTCGGCGCGATTAGCGGAGCTTCGCCGAAGGTTCGGTGGTGGT
GTAGCGGTGTAGCGGCTAGGGCCTTAACCTTTGTTGGCATACCAGTTGCT
GCGTGCCTGCCCGAAGGGTGGGTGCCACCACAACCCCAATAGTCCCACAC
CTGCCCCTTCACCTTTTTTTTCGTCTGCTACATTAGATAAAAGGGGGAAC
CAGGATACGTTGGGAGGGTACGGCATTGTTGCCATGCCATGCACAAGTTC
CCGTAAGATTTGGAGCAG
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Coding sequence (CDS) from alignment at C-linearis_contig74:552544..553511+

>mRNA_C-linearis_contig74.15025.1 ID=mRNA_C-linearis_contig74.15025.1|Name=mRNA_C-linearis_contig74.15025.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=984bp|location=Sequence derived from alignment at C-linearis_contig74:552544..553511+ (Chordaria linearis ClinC8C monoicous)
ATGCCAGGTGGTGCTTGGTGTGCTGCTACATACGTCTGCTCTAGGCTCCT
CCTCTACTTTGGGATCGGGCTCTGCTCTGGAGGAAGGGATAGACCCGTGT
TGCGGCCCTCGGCGAGCGAGGTTCTTGGGGTGGATATGACTGCCCGACAT
CGGTCAGGGTTCTTTCTTCTCTGCATTTTTGTCAAGGATCAAGGATCAAG
GAAAATGTGGCTCTCGTCCAGGGCCCTGACAATTTACATGGGTGCCAACC
CATATATGGCGGTGGCTTGGGTGTTCCGGGGGTTCGGCCCAATGGAACCT
TTTGTCTTGCACGACAAGCACGGCCGCTGTGGCAGTGGCGGCCTTAGAGA
GCTGAACGTTGCGCAAGGTGTCGCTCTTTTGGGGGGCGGGGATGCCAGGT
GGTGCTTGGTGTGCTGCTACATACGTCTGCTCTAGGCTCCTCCTCTACTT
TGGGATCGGGCTCTGCTCTGGAGGAAGGGATAGACCCGTGTTGCGGCCCT
CGGCGAGCGAGGTTCTTGGGGTGGATATGACTGCCCGACATCGGTCAGGG
TTCTTTCTTCTCTGCATTTTTGTCAAGGATCAAGGATCAAGGAAAATGTG
GCTCTCGTCCAGGGCCCTGACAATTTACATGGGTGCCAACCCATATATGG
CGGTGGCTTGGGTGTTCCGGGGGTTCGGCCCAATGGAACCTTTTGTCTTG
CACGACAAGCACGGCCGCTGTGGCAGTGGCGGCCTTAGAGAGCTGAACGT
TGCGCAAGGTGTCGCTCTTTTGGGGGGCGGGGTTTTTGTCACCGTCAAGC
TTGAACGAAATCTCGCAGGGCGCCAAGTCGAAGCGCGTGTTGTACCAGTA
GCATGCCATACAATGGGTGGCTACATTCGATAGTTTTTGTCACCGTCAAG
CTTGAACGAAATCTCGCAGGGCGCCAAGTCGAAGCGCGTGTTGTACCAGT
AGCATGCCATACAATGGGTGGCTACATTCGATAG
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