mRNA_C-linearis_contig74.15023.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig74.15023.1 vs. uniprot
Match: A0A6H5K1R5_9PHAE (PNPLA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1R5_9PHAE) HSP 1 Score: 332 bits (850), Expect = 1.610e-108 Identity = 176/236 (74.58%), Postives = 192/236 (81.36%), Query Frame = 3
Query: 234 RNPIIWASLFSRNLLPGVVNIHRSTHELLSRILDGQPIPDLDESAIPVLVSAFDATRLKTKVFSAGKAADALAASMAVPILFKPVWADGRPLIDGAVGDVAGVDGLERTERVLYHHATYLPLWLTQHLGGFSDLVALKIDGLPYLNPWQLPGNGMDALRLAKEATLRALDSPMDRR-WQSEVVAPPTXXXXXXXXXXXXXXSSVLAGARKEGVRVVKVQAHARRGVDDDGGIRSRI 938
RNPIIWASLFSRNLLPGVVNIHRST ELL R L+GQ PDLD+SA+PVLVSAFDATRLKTKVFS GKAADALAASMAVP LFKPVW++GRPLIDGAVGDVAGVDGLER+ERVLYHHATYLPL LTQHLGGF+DLVALKI+GLPYLNPWQLPGNGMDA RLAKEATLRALD+P+ +R W V A +S L A GVRVVKV+A R+ VD G +RSR+
Sbjct: 78 RNPIIWASLFSRNLLPGVVNIHRSTRELLDRTLEGQAAPDLDKSALPVLVSAFDATRLKTKVFSEGKAADALAASMAVPGLFKPVWSNGRPLIDGAVGDVAGVDGLERSERVLYHHATYLPLRLTQHLGGFTDLVALKINGLPYLNPWQLPGNGMDAFRLAKEATLRALDTPVKKRGWTGSVAA-----------TKADDGTSGLPEAVHPGVRVVKVRAQRRQMVDSGGVVRSRL 302
BLAST of mRNA_C-linearis_contig74.15023.1 vs. uniprot
Match: A0A7S3XKZ4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XKZ4_HETAK) HSP 1 Score: 120 bits (302), Expect = 3.460e-27 Identity = 63/169 (37.28%), Postives = 101/169 (59.76%), Query Frame = 3
Query: 234 RNPIIWASLFSRNLLPGVVNIHRSTHELLSRILDGQPIPDLDESAIPVLVSAFDATRLKTKVFSAGKAADALAASMAVPILFKPVWADGRPLIDGAVGDVAGVDGLERTERVLYHHATYLPLWLTQHLGGFSDLVALKIDGLPYLNPWQLPGNGMDALRLAKEATLRAL 740
R I+ N PG+ N+++++ ++ L P+ ++ +P +SAFD L+T+ F +G A+AASM+VP +FKP + +G+P +DGA+ DVAG+ G+++ ERVLYHH T LP+ + + F + LKI+GLP+L+P G + + LA AT AL
Sbjct: 87 REEILQLGTLMGNPWPGLFNVYKASQSVIRDFL---PVHSFEQCRLPAAISAFDIYNLRTQAFFSGDIVTAVAASMSVPFMFKPTFINGKPFLDGALFDVAGLAGVDKDERVLYHHCTALPVSCSG-IDAFRNSTTLKIEGLPFLDPATYSRRGAETIELAYVATKDAL 251
BLAST of mRNA_C-linearis_contig74.15023.1 vs. uniprot
Match: A0A813I6K8_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813I6K8_POLGL) HSP 1 Score: 100 bits (249), Expect = 6.310e-20 Identity = 59/154 (38.31%), Postives = 89/154 (57.79%), Query Frame = 3
Query: 282 GVVNIHRSTHELLSRILDGQPIPDLDESAIPVLVSAFDATRLKTKVFSAGKAADALAASMAVPILFKPVWAD-GRPLIDGAVGDVAGVDGLERTERVLYHHATYLPLWLTQHLGGFSDLVALKIDGLPYLNPWQLPGNGMDALRLAKEATLRAL 740
G+ + L SR+ + L++ A+PV +S FD +T+V G A A+ AS+AVP F PV+ + GRPL+DG + D+ G++G+ ERVLYHHA+ +P T +G + + + L+I LP++NP+ L G AL AK AT L
Sbjct: 124 GIFSTEHVQRCLQSRLEKYRLCQRLEDCAVPVAISTFDVFSRQTRVLREGSIAFAITASLAVPFFFAPVYFEVGRPLLDGGIRDLPGLEGVSFGERVLYHHASIVPSCFTA-IGRYPESITLRIPHLPFVNPFTL-GQAQPALTTAKLATQAGL 275
BLAST of mRNA_C-linearis_contig74.15023.1 vs. uniprot
Match: A0A7W0VK99_9DELT (Patatin-like phospholipase family protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7W0VK99_9DELT) HSP 1 Score: 97.1 bits (240), Expect = 2.360e-19 Identity = 60/139 (43.17%), Postives = 80/139 (57.55%), Query Frame = 3
Query: 342 PIPDLDESAIPVLVSAFDATRLKTKVFSAGKAADALAASMAVPILFKPVWADGRPLIDGAVGDVAGVDGLERTERVLYHHATYLPLWLTQHLGGFSDLVALKIDGLPYLNPWQLPGNGMDALRLAKEATLRALDSPMDR 758
PI +++ IPV +S FD +T+V G A A+ AS AVP +F PVW D RP DG + D G+ GL R+LYHH T + + D+V L +DGLP NP++L G AL LA+ AT RALD P++R
Sbjct: 102 PIARIEDCRIPVRISVFDILARRTRVLETGDLATAIRASCAVPGMFHPVWIDRRPYWDGGILDRPGIAGLP-PGRLLYHHITGPVFPIPKR----PDMVTLVLDGLPRANPFRLDA-GRRALDLARIATDRALDQPIER 234
BLAST of mRNA_C-linearis_contig74.15023.1 vs. uniprot
Match: D0LWV0_HALO1 (Patatin n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) TaxID=502025 RepID=D0LWV0_HALO1) HSP 1 Score: 91.3 bits (225), Expect = 2.660e-17 Identity = 59/154 (38.31%), Postives = 85/154 (55.19%), Query Frame = 3
Query: 300 RSTHELLSRILDGQPIPDLDESAIPVLVSAFDATRLKTKVFSAGKAADALAASMAVPILFKPVWADGRPLIDGAVGDVAGVDGLERTERVLYHHATYLPLWLTQ-----HLGGFSDLVALKIDGLPYLNPWQLPGNGMDALRLAKEATLRALDS 746
R+ +L R+L + + D PV +S FD R +T V +G A A+ AS AVP++F PVW +GR L+DG V D G+ G+E ERVLYHH W + + L AL + LP +P+++ G A+ +A+E TLRALD+
Sbjct: 92 RAFRGILERMLVARRVEDC---VTPVALSVFDLLRRETVVVQSGDLASAIHASCAVPVMFHPVWREGRMLVDGGVADRPGLAGVEAGERVLYHHLASRSPWRRKGSPALRIPNRPGLRALCFE-LPRSSPFRIE-RGHQAMSIAREHTLRALDA 240
BLAST of mRNA_C-linearis_contig74.15023.1 vs. uniprot
Match: D8LD55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD55_ECTSI) HSP 1 Score: 52.4 bits (124), Expect = 2.340e-5 Identity = 36/82 (43.90%), Postives = 44/82 (53.66%), Query Frame = 3
Query: 696 MDALRLAKEATLRALDSPMDRR-WQSEVVAPPTXXXXXXXXXXXXXXSSVLAGARKEGVRVVKVQAHARRGVDDDGGIRSRI 938
MDA RLAKEATLRALD+P+ +R W A +S L A GVRVVKV+A + VD G +RSR+
Sbjct: 1 MDAFRLAKEATLRALDTPVKKRGWTGSAAA-----------TKADDGTSGLPEAVHRGVRVVKVRAQRGQMVDSRGVVRSRL 71
BLAST of mRNA_C-linearis_contig74.15023.1 vs. uniprot
Match: UPI001D0AB3CC (patatin-like phospholipase family protein n=1 Tax=Mesorhizobium sp. PAMC28654 TaxID=2880934 RepID=UPI001D0AB3CC) HSP 1 Score: 55.5 bits (132), Expect = 7.160e-5 Identity = 38/99 (38.38%), Postives = 53/99 (53.54%), Query Frame = 3
Query: 240 PIIWASLFS----RNLLPGVVNIHRSTHELLSRILDGQPIPDLDESAIPVLVSAFDATRLKTKVFSAGKAADALAASMAVPILFKPVWADGRPLIDGAV 524
P+ W SL R+ L G +H + + + P +L+++ IP+ V A D + V S G AADA+AAS A+P+ F PV GR LIDGAV
Sbjct: 79 PVSWLSLLGFARRRDFLSG-------SHGIRNLVERHLPYRNLEDAPIPIHVIATDLLSGEAVVLSEGNAADAIAASSAIPVAFAPVRIGGRFLIDGAV 170 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig74.15023.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig74.15023.1 >prot_C-linearis_contig74.15023.1 ID=prot_C-linearis_contig74.15023.1|Name=mRNA_C-linearis_contig74.15023.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=291bp MRVDSTANTQRMQDAVHLESFCRLYRLCANQPSALSCLPPPPAFVMPHVRback to top mRNA from alignment at C-linearis_contig74:543219..545783+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig74.15023.1 ID=mRNA_C-linearis_contig74.15023.1|Name=mRNA_C-linearis_contig74.15023.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2565bp|location=Sequence derived from alignment at C-linearis_contig74:543219..545783+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig74:543219..545783+ >mRNA_C-linearis_contig74.15023.1 ID=mRNA_C-linearis_contig74.15023.1|Name=mRNA_C-linearis_contig74.15023.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1746bp|location=Sequence derived from alignment at C-linearis_contig74:543219..545783+ (Chordaria linearis ClinC8C monoicous)back to top |