mRNA_C-linearis_contig74.15014.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig74.15014.1
Unique NamemRNA_C-linearis_contig74.15014.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig74.15014.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig74contigC-linearis_contig74:469764..470291 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size528
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig74.15014.1prot_C-linearis_contig74.15014.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig74 469769..470119 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930407.240922-UTR-C-linearis_contig74:469763..4697681622930407.240922-UTR-C-linearis_contig74:469763..469768Chordaria linearis ClinC8C monoicousUTRC-linearis_contig74 469764..469768 +
1690881053.9631162-UTR-C-linearis_contig74:469763..4697681690881053.9631162-UTR-C-linearis_contig74:469763..469768Chordaria linearis ClinC8C monoicousUTRC-linearis_contig74 469764..469768 +
1622930407.2937999-UTR-C-linearis_contig74:470119..4702911622930407.2937999-UTR-C-linearis_contig74:470119..470291Chordaria linearis ClinC8C monoicousUTRC-linearis_contig74 470120..470291 +
1690881053.9859555-UTR-C-linearis_contig74:470119..4702911690881053.9859555-UTR-C-linearis_contig74:470119..470291Chordaria linearis ClinC8C monoicousUTRC-linearis_contig74 470120..470291 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930407.276393-CDS-C-linearis_contig74:469768..4701191622930407.276393-CDS-C-linearis_contig74:469768..470119Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 469769..470119 +
1690881053.9748356-CDS-C-linearis_contig74:469768..4701191690881053.9748356-CDS-C-linearis_contig74:469768..470119Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 469769..470119 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig74.15014.1

>prot_C-linearis_contig74.15014.1 ID=prot_C-linearis_contig74.15014.1|Name=mRNA_C-linearis_contig74.15014.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=117bp
MVAPPKKCRAWSTLSLTSHDTYNEGEDPGEAGKMETEIRTLFWAPDPHPK
KHVEHKNNTDGDSKQTVLHSHIPNLPNKLCPTKSNLRCSNRKKQRPLCVR
RSISNRPQYQERACPA*
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mRNA from alignment at C-linearis_contig74:469764..470291+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig74.15014.1 ID=mRNA_C-linearis_contig74.15014.1|Name=mRNA_C-linearis_contig74.15014.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=528bp|location=Sequence derived from alignment at C-linearis_contig74:469764..470291+ (Chordaria linearis ClinC8C monoicous)
GTGGAATGGTGGCTCCACCCAAGAAGTGCAGAGCGTGGAGTACTCTTTCG
TTGACATCGCATGATACATACAACGAAGGAGAAGACCCGGGTGAGGCGGG
CAAGATGGAGACGGAAATACGAACATTGTTTTGGGCGCCAGATCCGCACC
CAAAGAAACATGTAGAGCATAAAAACAACACTGATGGAGACTCGAAACAG
ACCGTGCTACACTCACATATACCTAACCTCCCAAACAAACTTTGCCCGAC
AAAATCGAACCTTAGATGCAGCAACAGAAAAAAGCAGAGGCCTCTCTGCG
TACGTAGAAGCATATCGAACAGACCACAGTACCAAGAGCGCGCTTGCCCC
GCCTGAGGCGAGGGACAGAGTGCCTTCGCCTGGTGTTGGACTTTCTATCC
AAGCAAAGCATCAATGACACCACTCGAGGGGGTGGGGAGTTGTTGTTCCT
GAGGGATGTCTACATACATACCGTATACTTCGAAGTATCACCATTGCACC
CCCTGCCCTATCGCCGTTGCACCCCCTG
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Coding sequence (CDS) from alignment at C-linearis_contig74:469764..470291+

>mRNA_C-linearis_contig74.15014.1 ID=mRNA_C-linearis_contig74.15014.1|Name=mRNA_C-linearis_contig74.15014.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at C-linearis_contig74:469764..470291+ (Chordaria linearis ClinC8C monoicous)
ATGGTGGCTCCACCCAAGAAGTGCAGAGCGTGGAGTACTCTTTCGTTGAC
ATCGCATGATACATACAACGAAGGAGAAGACCCGGGTGAGGCGGGCAAGA
TGGAGACGGAAATACGAACATTGTTTTGGGCGCCAGATCCGCACCCAAAG
AAACATGTAGAGCATAAAAACAACACTGATGGAGACTCGAAACAGACCGT
GCTACACTCACATATACCTAACCTCCCAAACAAACTTTGCCCGACAAAAT
CGAACCTTAGATGCAGCAACAGAAAAAAGCAGAGGCCTCTCTGCGTACGT
AGAAGCATATCGAACAGACCACAGTACCAAGAGCGCGCTTGCCCCGCCTG
AATGGTGGCTCCACCCAAGAAGTGCAGAGCGTGGAGTACTCTTTCGTTGA
CATCGCATGATACATACAACGAAGGAGAAGACCCGGGTGAGGCGGGCAAG
ATGGAGACGGAAATACGAACATTGTTTTGGGCGCCAGATCCGCACCCAAA
GAAACATGTAGAGCATAAAAACAACACTGATGGAGACTCGAAACAGACCG
TGCTACACTCACATATACCTAACCTCCCAAACAAACTTTGCCCGACAAAA
TCGAACCTTAGATGCAGCAACAGAAAAAAGCAGAGGCCTCTCTGCGTACG
TAGAAGCATATCGAACAGACCACAGTACCAAGAGCGCGCTTGCCCCGCCT
GA
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