mRNA_C-linearis_contig74.15012.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig74.15012.1
Unique NamemRNA_C-linearis_contig74.15012.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig74.15012.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig74contigC-linearis_contig74:444853..445375 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size377
Cds size348
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig74.15012.1prot_C-linearis_contig74.15012.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig74 444853..445348 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930406.5636055-CDS-C-linearis_contig74:444852..4450171622930406.5636055-CDS-C-linearis_contig74:444852..445017Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 444853..445017 -
1690881053.740822-CDS-C-linearis_contig74:444852..4450171690881053.740822-CDS-C-linearis_contig74:444852..445017Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 444853..445017 -
1622930406.5886457-CDS-C-linearis_contig74:445028..4451411622930406.5886457-CDS-C-linearis_contig74:445028..445141Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 445029..445141 -
1690881053.752318-CDS-C-linearis_contig74:445028..4451411690881053.752318-CDS-C-linearis_contig74:445028..445141Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 445029..445141 -
1622930406.6055393-CDS-C-linearis_contig74:445278..4453481622930406.6055393-CDS-C-linearis_contig74:445278..445348Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 445279..445348 -
1690881053.7614477-CDS-C-linearis_contig74:445278..4453481690881053.7614477-CDS-C-linearis_contig74:445278..445348Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 445279..445348 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930406.6212573-UTR-C-linearis_contig74:445348..4453751622930406.6212573-UTR-C-linearis_contig74:445348..445375Chordaria linearis ClinC8C monoicousUTRC-linearis_contig74 445349..445375 -
1690881053.7714174-UTR-C-linearis_contig74:445348..4453751690881053.7714174-UTR-C-linearis_contig74:445348..445375Chordaria linearis ClinC8C monoicousUTRC-linearis_contig74 445349..445375 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig74.15012.1

>prot_C-linearis_contig74.15012.1 ID=prot_C-linearis_contig74.15012.1|Name=mRNA_C-linearis_contig74.15012.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=116bp
MRHVFCYVSLDIQPWSCPTFVSPGIQPWSHPTAVLVKKHGARSVRHVFCC
VSLDIQPWSCPSGHPSLELPCLYGFRYPTLELFHLYLRASGHPNLELPYC
GSVREMCRLLCKEIAL
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mRNA from alignment at C-linearis_contig74:444853..445375-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig74.15012.1 ID=mRNA_C-linearis_contig74.15012.1|Name=mRNA_C-linearis_contig74.15012.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=523bp|location=Sequence derived from alignment at C-linearis_contig74:444853..445375- (Chordaria linearis ClinC8C monoicous)
CTGGTCAAGAAACATGGCGCTCGATCTATGCGGCACGTGTTCTGCTATGT
GAGTCTGGACATCCAACCTTGGAGCTGTCCTACTTTCGTGAGTCCGGGCA
TCCAACCTTGGAGCTGCCCTGCCTATCAGGGTTTCGACATCCAACCTTGG
ATCTGTCCTACCGATAGATTTTTTTTCTCCTTTTTTTTAAGAGGCGTCAA
CATTTTCTTGAGAAAAAGACTTGCGTGCGTCTAGGCATCCAACCTTGGAG
CCACCCTACTGCCGTTCTGGTCAAGAAACATGGCGCTCGATCTGTGCGGC
ACGTGTTCTGCTGTGTGAGTCTGGACATCCAACCTTGGAGCTGTCCTGCT
TTCGTGAGTCCGGGCATCCATCCTTGGAACTGCCCTGTCTGTATGGGTTT
CGATATCCAACCTTGGAGCTGTTCCACCTATACTTGCGTGCGTCTGGGCA
TCCCAACTTGGAGCTGCCGTACTGCGGTTCGGTTCGAGAAATGTGTCGTT
TGCTCTGTAAAGAAATTGCTCTG
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Coding sequence (CDS) from alignment at C-linearis_contig74:444853..445375-

>mRNA_C-linearis_contig74.15012.1 ID=mRNA_C-linearis_contig74.15012.1|Name=mRNA_C-linearis_contig74.15012.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at C-linearis_contig74:444853..445375- (Chordaria linearis ClinC8C monoicous)
ATGCGGCACGTGTTCTGCTATGTGAGTCTGGACATCCAACCTTGGAGCTG
TCCTACTTTCGTGAGTCCGGATGCGGCACGTGTTCTGCTATGTGAGTCTG
GACATCCAACCTTGGAGCTGTCCTACTTTCGTGAGTCCGGGCATCCAACC
TTGGAGCCACCCTACTGCCGTTCTGGTCAAGAAACATGGCGCTCGATCTG
TGCGGCACGTGTTCTGCTGTGTGAGTCTGGACATCCAACCTTGGAGCTGT
CCTGCATCCAACCTTGGAGCCACCCTACTGCCGTTCTGGTCAAGAAACAT
GGCGCTCGATCTGTGCGGCACGTGTTCTGCTGTGTGAGTCTGGACATCCA
ACCTTGGAGCTGTCCTTCCGGGCATCCATCCTTGGAACTGCCCTGTCTGT
ATGGGTTTCGATATCCAACCTTGGAGCTGTTCCACCTATACTTGCGTGCG
TCTGGGCATCCCAACTTGGAGCTGCCGTACTGCGGTTCGGTTCGAGAAAT
GTGTCGTTTGCTCTGTAAAGAAATTGCTCTGTCCGGGCATCCATCCTTGG
AACTGCCCTGTCTGTATGGGTTTCGATATCCAACCTTGGAGCTGTTCCAC
CTATACTTGCGTGCGTCTGGGCATCCCAACTTGGAGCTGCCGTACTGCGG
TTCGGTTCGAGAAATGTGTCGTTTGCTCTGTAAAGAAATTGCTCTG
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