mRNA_C-linearis_contig74.15010.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig74.15010.1
Unique NamemRNA_C-linearis_contig74.15010.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig74.15010.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig74contigC-linearis_contig74:418265..418649 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size386
Cds size384
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930407.1932228-CDS-C-linearis_contig74:418264..4186481622930407.1932228-CDS-C-linearis_contig74:418264..418648Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 418265..418648 +
1690881053.9518328-CDS-C-linearis_contig74:418264..4186481690881053.9518328-CDS-C-linearis_contig74:418264..418648Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 418265..418648 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig74.15010.1prot_C-linearis_contig74.15010.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig74 418265..418648 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig74.15010.1

>prot_C-linearis_contig74.15010.1 ID=prot_C-linearis_contig74.15010.1|Name=mRNA_C-linearis_contig74.15010.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=128bp
VPEPQHPEQQQQHQRQQLHHWPQHQRHPVPHRERPFLARLAQVPQAVGGN
LQDLPQQAVVVSVVPMRVLPPVRGVWGVWWLRRRRDRTTSTTRCAMCNTE
EKKSEKRSKLCPERPGCRRWVHRSSSKE
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mRNA from alignment at C-linearis_contig74:418265..418649+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig74.15010.1 ID=mRNA_C-linearis_contig74.15010.1|Name=mRNA_C-linearis_contig74.15010.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=385bp|location=Sequence derived from alignment at C-linearis_contig74:418265..418649+ (Chordaria linearis ClinC8C monoicous)
GTCCCGGAGCCGCAGCACCCGGAGCAGCAGCAGCAGCACCAACGCCAACA
ACTGCACCACTGGCCGCAGCACCAGCGGCACCCGGTCCCACACCGGGAGA
GGCCCTTCCTCGCCCGCCTCGCCCAGGTCCCCCAGGCTGTGGGGGGGAAT
CTGCAGGATCTACCTCAGCAGGCCGTAGTCGTTTCGGTCGTTCCGATGCG
CGTACTCCCGCCGGTCCGGGGCGTGTGGGGCGTGTGGTGGCTACGGCGTC
GAAGAGATCGTACCACAAGTACAACAAGGTGTGCGATGTGCAATACGGAG
GAGAAGAAGAGTGAGAAAAGATCCAAGCTGTGCCCGGAAAGGCCTGGTTG
CAGAAGATGGGTCCACAGGAGTAGTTCCAAGGAGT
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Coding sequence (CDS) from alignment at C-linearis_contig74:418265..418649+

>mRNA_C-linearis_contig74.15010.1 ID=mRNA_C-linearis_contig74.15010.1|Name=mRNA_C-linearis_contig74.15010.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=768bp|location=Sequence derived from alignment at C-linearis_contig74:418265..418649+ (Chordaria linearis ClinC8C monoicous)
GTCCCGGAGCCGCAGCACCCGGAGCAGCAGCAGCAGCACCAACGCCAACA
ACTGCACCACTGGCCGCAGCACCAGCGGCACCCGGTCCCACACCGGGAGA
GGCCCTTCCTCGCCCGCCTCGCCCAGGTCCCCCAGGCTGTGGGGGGGAAT
CTGCAGGATCTACCTCAGCAGGCCGTAGTCGTTTCGGTCGTTCCGATGCG
CGTACTCCCGCCGGTCCGGGGCGTGTGGGGCGTGTGGTGGCTACGGCGTC
GAAGAGATCGTACCACAAGTACAACAAGGTGTGCGATGTGCAATACGGAG
GAGAAGAAGAGTGAGAAAAGATCCAAGCTGTGCCCGGAAAGGCCTGGTTG
CAGAAGATGGGTCCACAGGAGTAGTTCCAAGGAGGTCCCGGAGCCGCAGC
ACCCGGAGCAGCAGCAGCAGCACCAACGCCAACAACTGCACCACTGGCCG
CAGCACCAGCGGCACCCGGTCCCACACCGGGAGAGGCCCTTCCTCGCCCG
CCTCGCCCAGGTCCCCCAGGCTGTGGGGGGGAATCTGCAGGATCTACCTC
AGCAGGCCGTAGTCGTTTCGGTCGTTCCGATGCGCGTACTCCCGCCGGTC
CGGGGCGTGTGGGGCGTGTGGTGGCTACGGCGTCGAAGAGATCGTACCAC
AAGTACAACAAGGTGTGCGATGTGCAATACGGAGGAGAAGAAGAGTGAGA
AAAGATCCAAGCTGTGCCCGGAAAGGCCTGGTTGCAGAAGATGGGTCCAC
AGGAGTAGTTCCAAGGAG
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