mRNA_C-linearis_contig74.15006.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig74.15006.1
Unique NamemRNA_C-linearis_contig74.15006.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig74.15006.1 vs. uniprot
Match: D8LD48_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD48_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 4.030e-30
Identity = 97/191 (50.79%), Postives = 116/191 (60.73%), Query Frame = 1 
Query:  211 RSSPRLHLTQKKPQTNARRGLG-VGARVASARQQQPSRARGXXXXXXXXXXXXXXXXXXXXXDGRAATKKAVQ-------ADGVSKVTNGLKGDLAAATETGMEKLEAGCDAFAAAALDRCSAAMSGREEEIEATEATLREMESREASVTSPCSEMLKTIESNNVSLSAVVERCSATLDSIQQAESRRLKS 759
            RSSPRLHLTQK+   NARRG G VG R AS  Q+Q ++A+G              XXXXXXX                  AD V+KV   LKGD  A  +  M K+EA C  F    L+ CSA +SGREE  E   A LRE+E+R+AS+ S  SEMLK +ESN+ +LSAVVERC A LDS+QQAESR+LKS
Sbjct:   53 RSSPRLHLTQKRTPANARRGSGPVGNRFAS-NQRQSTKAKGRTSSVGAHRDSSGGXXXXXXXXXXXXXXXXXXXXXXXSPADDVAKVMIDLKGDSTAVIDKAMGKVEAECGTFVMTVLESCSAGVSGREEHDETAAAALREIETRQASLASRRSEMLKEVESNSSNLSAVVERCRAALDSLQQAESRKLKS 242
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BLAST of mRNA_C-linearis_contig74.15006.1 vs. uniprot
Match: A0A6H5LLS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LLS0_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 2.820e-24
Identity = 62/111 (55.86%), Postives = 79/111 (71.17%), Query Frame = 1 
Query:  427 ADGVSKVTNGLKGDLAAATETGMEKLEAGCDAFAAAALDRCSAAMSGREEEIEATEATLREMESREASVTSPCSEMLKTIESNNVSLSAVVERCSATLDSIQQAESRRLKS 759
            ADGV+K+   LKGD+ A  +  M K+EA C  F    L+ CSA +SGREE  E   A LREM++R+AS+ S  SEMLK + SN+ +LSAVVERC A LD++QQAESR+LKS
Sbjct:   59 ADGVAKLMIDLKGDITAVIDKAMGKVEAECGTFVTTVLESCSAGVSGREEHYETAAAALREMKTRQASMASRRSEMLKEVASNSSNLSAVVERCRAALDNLQQAESRKLKS 169
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig74.15006.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LD48_ECTSI4.030e-3050.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LLS0_9PHAE2.820e-2455.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig74contigC-linearis_contig74:335837..339059 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_000440.1
Exons6
Model size778
Cds size777
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig74.15006.1prot_C-linearis_contig74.15006.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig74 335837..339059 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930412.0540109-CDS-C-linearis_contig74:335836..3359451622930412.0540109-CDS-C-linearis_contig74:335836..335945Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 335837..335945 -
1690881056.417725-CDS-C-linearis_contig74:335836..3359451690881056.417725-CDS-C-linearis_contig74:335836..335945Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 335837..335945 -
1622930412.0699544-CDS-C-linearis_contig74:336208..3363501622930412.0699544-CDS-C-linearis_contig74:336208..336350Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 336209..336350 -
1690881056.4291825-CDS-C-linearis_contig74:336208..3363501690881056.4291825-CDS-C-linearis_contig74:336208..336350Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 336209..336350 -
1622930412.0909247-CDS-C-linearis_contig74:336835..3370521622930412.0909247-CDS-C-linearis_contig74:336835..337052Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 336836..337052 -
1690881056.4405572-CDS-C-linearis_contig74:336835..3370521690881056.4405572-CDS-C-linearis_contig74:336835..337052Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 336836..337052 -
1622930412.1031408-CDS-C-linearis_contig74:337397..3375141622930412.1031408-CDS-C-linearis_contig74:337397..337514Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 337398..337514 -
1690881056.4519079-CDS-C-linearis_contig74:337397..3375141690881056.4519079-CDS-C-linearis_contig74:337397..337514Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 337398..337514 -
1622930412.1177964-CDS-C-linearis_contig74:338242..3384001622930412.1177964-CDS-C-linearis_contig74:338242..338400Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 338243..338400 -
1690881056.462721-CDS-C-linearis_contig74:338242..3384001690881056.462721-CDS-C-linearis_contig74:338242..338400Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 338243..338400 -
1622930412.1361783-CDS-C-linearis_contig74:339025..3390591622930412.1361783-CDS-C-linearis_contig74:339025..339059Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 339026..339059 -
1690881056.4783118-CDS-C-linearis_contig74:339025..3390591690881056.4783118-CDS-C-linearis_contig74:339025..339059Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 339026..339059 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig74.15006.1

>prot_C-linearis_contig74.15006.1 ID=prot_C-linearis_contig74.15006.1|Name=mRNA_C-linearis_contig74.15006.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=259bp
EVRSTHGAPEAGVTKSTDRNLSYHAFTSMALFPKAQQGRRGVGDRGAVSS
SAAARKKTPRQNKQQKNVGGRSSPRLHLTQKKPQTNARRGLGVGARVASA
RQQQPSRARGGASASGARRNGTTTSRSGGGGDGRAATKKAVQADGVSKVT
NGLKGDLAAATETGMEKLEAGCDAFAAAALDRCSAAMSGREEEIEATEAT
LREMESREASVTSPCSEMLKTIESNNVSLSAVVERCSATLDSIQQAESRR
LKSRVSAQT
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mRNA from alignment at C-linearis_contig74:335837..339059-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig74.15006.1 ID=mRNA_C-linearis_contig74.15006.1|Name=mRNA_C-linearis_contig74.15006.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3223bp|location=Sequence derived from alignment at C-linearis_contig74:335837..339059- (Chordaria linearis ClinC8C monoicous)
GAAGTGAGGTCGACACACGGCGCCCCGGAAGCAGGTGCAGGTGGTGTGCC
AAAGTGTTCGGTTTGCACAGCGGTTGGTTGCACCGTCCACGAGTGTGAGA
ACCCTTGTGACACCCGTCATACTGAAGTGAAGAGCGGCGGTAGGTGTGAG
TTAGTGCCCGCGTTGTGGTCCAAAGCTGGGTGGTTCCGTTGGAATTTTGA
AATTCGAAACTCTCTCAAGTGACCCTCACATCTTGTGTGCACACGGTGTA
CATATGACACTAATCGATGTGGGAAAATGAAGCTATATTTATATTTCTCT
GTCGAGCGTCTTCATTCAAGTTGATTTTTTCTTACGTTTGACTGTGAGTA
CGTGCAGTGGACTACATGCCGACATGTTGCTTGACTGAACAAATGTAGAT
GAATCAGGAACAAGAGCAAGAACTCAGCCTTCACTCCCCTTTGCGCGGTG
CCCTCGCCCGGCTTCCTCTCGTCTTTGCCAAAAGTTCTGGTGCCTCGGTT
CGGTGTATGTAGCTTCATCTCAAATGTTTCGCGATATCGCCAAGGGCGCA
GCCCCCCTCAAACGTGGCATTCGGCCCGTTGCATCTCACGAACGTTACCG
TTCGTGTTCTCCATCTGAGCGCCACGGCGTGCTTGCTTCGCAATGGTCGG
TTGCAACAGGTGTCACCAAGTCAACGGATCGGAACTTGAGCTACCACGCA
TTCACCTCGATGGCGCTGTTTCCAAAGGCCCAGCAGGGACGCCGCGGCGT
TGGCGACAGAGGCGCGGTTTCGTCATCGGCCGCGGCAAGAAAGAAAACCC
CAAGGCAAAACAAGCAGGTGAGAGGAACAGCGGATAGAGGATGGGGCGGC
GTCTCTACGGAAGCCAAACACCGTAGTTCGGGTTCAGGTGGACAGAAGCG
TTGCTAACCAAACTTCAGCCGATTGAAACCTGCACAGCAGGTCTGACTGT
TGAGACGCACAACAATGTGGACGGGGTGCCGTTGCTGATGTCGCGGGCGC
TTAGATTCGATAGTTCAGCCTTCCCACGCCGGGTCGTTTGTCTCAACCCC
AGCTATACTTGGCCGAGGCATGATGGTTGCTTTCCGCTCACGTGCGGCAG
GGAAGGCTGACCGCTGCATCTTCCAGCTGGGACATCACCGTTTAGTGCTT
TACGCCCATGGCAATAGGGCACTGATATTCTCTTGGTGTCTCCAATACCG
CAACCGGAAACAGAGTTACACGCAACGCAGCACCACCACCACCACCATCA
CCAGCGATATAGACTGGACTTAACCATTCCTCCAACGAAACGTATCGTTC
TCGACACGCTGACGTAGGAATAGGAAAAAAAGTGTCCGACCGCAGTTCCC
TTCATTTGTCAACTCGTTTCGACATCGGCCCTTGAAACCATTGCACGTCC
CCTGTAGCCCCATTGCCGATTCAAACCTTTGTGTTGTTCGAAGATGGCCC
TAGACGTTCCACCAGTTCCAAGCAAAATCGGTCGACCACTCACGGTGGTT
CCAAGCTTAGGCTACACCCCGTGAAACGTGTCCGTCTTTCCGTAGCAGAA
GAACGTCGGCGGCCGGTCTTCCCCCAGGCTACACCTGACACAGAAAAAAC
CGCAGACCAACGCTAGACGCGGCTTAGGGGTCGGGGCACGGGTCGCTTCC
GCCCGCCAGCAGGTGAGTCCAGGTGTTACGGGGATGTAAGCGAGTTAGCT
GGCGTGCAACTACCGCGCTATTCGCACATTCCTCACAGACAACCTTCAAC
CTTCATAGTCTCTGTGCTACAGCCCCCGAGACCAACGGGTTCGCCTTGAG
ACAGGTGTTGCGGGGGCACAGCCACGGCAATACACAAGCGCGCCTCCCCC
CTGTCATCCACACACGTCACGAAGCTTTGTGTTGTCTTCGTGGATACGGG
TTGGCCGTTTGTACTTCCGTGTCAAGTTGTATTATGTTGTACTTGTACTC
TCATCTCCCGCTTGCACGAGTTCATCTCTACACATCCAATGCTTCACCGA
CCACAAGCAGCCCTCGAGAGCGAGGGGAGGAGCTTCCGCTTCGGGCGCAA
GGCGCAACGGAACCACTACCTCCCGCAGCGGTGGTGGCGGTGATGGCCGT
GCGGCAACGAAGAAGGCGGTGCAGGCGGACGGTGTTTCGAAGGTCACGAA
CGGCCTGAAGGGCGACCTGGCCGCGGCTACGGAGACGGGCATGGAGAAGC
TGGAGGCAGGGTGCGACGCGTTCGGTGAGTGGACCAAGCTCGTGCAGTAT
TTTGAGGAAGAGAGTCTCACCTCGGCATGTTTTTTTTCATATTCGCATGC
CGCGTTTTTCACGTGTTGCCGACGATCTATGGTGCCAATCAATCAAGCGG
GGAGTCATACGACCGCTCCGCGGTGTGTAGCGGGCTAACCCATGGGGCTT
GATGTGAGATGCTTTGACGTGGTGGCAGTGATCGCTGCCGCCACGGTCTA
GGCGTTTATCCCAGTTTACTGTTTGTCGAATGTGCAAGCGTATGGCAGCC
GCCCTTGTCACGGTAAAATGCTGCTCATCATGCTCTAGCATACAAGCACG
ATTTCAGTATGTGGTTTTATTTGCTTGTTCTTGGTGATGTTAAAGACATG
TTTATGATTTTAAAGACATCATATGTTCGTGATTTTAAAGACAGTACCTT
AAATAAATGTTTGGTATTTTAAAGACATGTGGCATGTACTTGTTTTTTTT
TTACGGCAGCGGCAGCGGCGCTGGACAGGTGCTCCGCTGCCATGTCTGGT
AGGGAGGAGGAAATCGAGGCGACTGAGGCAACACTGCGCGAGATGGAGAG
CAGAGAGGCCTCCGTCACTTCGCCCTGTTCGGAGATGCTCAAGACTATCG
AGTGAGTAATCCCAGCTGACTCCATTCCTACCTGGTGTTGTGGTGGTTGC
GCTGATTCTCGTGCGGCAGAAAGCGCTTCCGGCGAAATCCGCCGATAGTT
GCGAACGCCACTTTTCTGGTGCTGGTTGCGCACGAAAGCGTTGATTTAGA
TGCCGATAATGATAGAAAGTGTCTGTCTCTCCCCCTATCCCCTTTCTCCC
TGACACCCAGATCACCTGCTTCCGCACGACGGTTTTTGTTTGTTTCCGTG
TTGGCCGCCGTCAGGAGCAACAACGTTAGCCTGTCAGCAGTGGTGGAGCG
CTGTAGCGCGACCTTGGACAGCATCCAGCAGGCGGAAAGCCGAAGGCTGA
AGAGCAGGGTGAGTGCACAAACG
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Coding sequence (CDS) from alignment at C-linearis_contig74:335837..339059-

>mRNA_C-linearis_contig74.15006.1 ID=mRNA_C-linearis_contig74.15006.1|Name=mRNA_C-linearis_contig74.15006.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1554bp|location=Sequence derived from alignment at C-linearis_contig74:335837..339059- (Chordaria linearis ClinC8C monoicous)
GAAGTGAGGTCGACACACGGCGCCCCGGAAGCAGGAAGTGAGGTCGACAC
ACGGCGCCCCGGAAGCAGGTGTCACCAAGTCAACGGATCGGAACTTGAGC
TACCACGCATTCACCTCGATGGCGCTGTTTCCAAAGGCCCAGCAGGGACG
CCGCGGCGTTGGCGACAGAGGCGCGGTTTCGTCATCGGCCGCGGCAAGAA
AGAAAACCCCAAGGCAAAACAAGCAGGTGTCACCAAGTCAACGGATCGGA
ACTTGAGCTACCACGCATTCACCTCGATGGCGCTGTTTCCAAAGGCCCAG
CAGGGACGCCGCGGCGTTGGCGACAGAGGCGCGGTTTCGTCATCGGCCGC
GGCAAGAAAGAAAACCCCAAGGCAAAACAAGCAGCAGAAGAACGTCGGCG
GCCGGTCTTCCCCCAGGCTACACCTGACACAGAAAAAACCGCAGACCAAC
GCTAGACGCGGCTTAGGGGTCGGGGCACGGGTCGCTTCCGCCCGCCAGCA
GCAGAAGAACGTCGGCGGCCGGTCTTCCCCCAGGCTACACCTGACACAGA
AAAAACCGCAGACCAACGCTAGACGCGGCTTAGGGGTCGGGGCACGGGTC
GCTTCCGCCCGCCAGCAGCAGCCCTCGAGAGCGAGGGGAGGAGCTTCCGC
TTCGGGCGCAAGGCGCAACGGAACCACTACCTCCCGCAGCGGTGGTGGCG
GTGATGGCCGTGCGGCAACGAAGAAGGCGGTGCAGGCGGACGGTGTTTCG
AAGGTCACGAACGGCCTGAAGGGCGACCTGGCCGCGGCTACGGAGACGGG
CATGGAGAAGCTGGAGGCAGGGTGCGACGCGTTCGCAGCCCTCGAGAGCG
AGGGGAGGAGCTTCCGCTTCGGGCGCAAGGCGCAACGGAACCACTACCTC
CCGCAGCGGTGGTGGCGGTGATGGCCGTGCGGCAACGAAGAAGGCGGTGC
AGGCGGACGGTGTTTCGAAGGTCACGAACGGCCTGAAGGGCGACCTGGCC
GCGGCTACGGAGACGGGCATGGAGAAGCTGGAGGCAGGGTGCGACGCGTT
CGCGGCAGCGGCGCTGGACAGGTGCTCCGCTGCCATGTCTGGTAGGGAGG
AGGAAATCGAGGCGACTGAGGCAACACTGCGCGAGATGGAGAGCAGAGAG
GCCTCCGTCACTTCGCCCTGTTCGGAGATGCTCAAGACTATCGACGGCAG
CGGCGCTGGACAGGTGCTCCGCTGCCATGTCTGGTAGGGAGGAGGAAATC
GAGGCGACTGAGGCAACACTGCGCGAGATGGAGAGCAGAGAGGCCTCCGT
CACTTCGCCCTGTTCGGAGATGCTCAAGACTATCGAGAGCAACAACGTTA
GCCTGTCAGCAGTGGTGGAGCGCTGTAGCGCGACCTTGGACAGCATCCAG
CAGGCGGAAAGCCGAAGGCTGAAGAGCAGGGTGAGTGCACAAACGGAGCA
ACAACGTTAGCCTGTCAGCAGTGGTGGAGCGCTGTAGCGCGACCTTGGAC
AGCATCCAGCAGGCGGAAAGCCGAAGGCTGAAGAGCAGGGTGAGTGCACA
AACG
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