mRNA_C-linearis_contig73.14977.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig73.14977.1
Unique NamemRNA_C-linearis_contig73.14977.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig73.14977.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig73contigC-linearis_contig73:815308..816286 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size581
Cds size450
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig73.14977.1prot_C-linearis_contig73.14977.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig73 815315..816162 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930405.8188484-UTR-C-linearis_contig73:815307..8153141622930405.8188484-UTR-C-linearis_contig73:815307..815314Chordaria linearis ClinC8C monoicousUTRC-linearis_contig73 815308..815314 +
1690881053.4208698-UTR-C-linearis_contig73:815307..8153141690881053.4208698-UTR-C-linearis_contig73:815307..815314Chordaria linearis ClinC8C monoicousUTRC-linearis_contig73 815308..815314 +
1622930405.9119694-UTR-C-linearis_contig73:816162..8162861622930405.9119694-UTR-C-linearis_contig73:816162..816286Chordaria linearis ClinC8C monoicousUTRC-linearis_contig73 816163..816286 +
1690881053.4597259-UTR-C-linearis_contig73:816162..8162861690881053.4597259-UTR-C-linearis_contig73:816162..816286Chordaria linearis ClinC8C monoicousUTRC-linearis_contig73 816163..816286 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930405.8356984-CDS-C-linearis_contig73:815314..8157131622930405.8356984-CDS-C-linearis_contig73:815314..815713Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 815315..815713 +
1690881053.4324281-CDS-C-linearis_contig73:815314..8157131690881053.4324281-CDS-C-linearis_contig73:815314..815713Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 815315..815713 +
1622930405.8567517-CDS-C-linearis_contig73:816111..8161621622930405.8567517-CDS-C-linearis_contig73:816111..816162Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 816112..816162 +
1690881053.448079-CDS-C-linearis_contig73:816111..8161621690881053.448079-CDS-C-linearis_contig73:816111..816162Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 816112..816162 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig73.14977.1

>prot_C-linearis_contig73.14977.1 ID=prot_C-linearis_contig73.14977.1|Name=mRNA_C-linearis_contig73.14977.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=150bp
MALAARRAEATLKVSSRGPSYFESQTLPCPPLLPLHPATQAASDGVNGLP
IPDRVAQFAVTCGLGARVAPQLLPLMISSVYGEAYARSVTVMSAEVVENM
IDVFWRNEIAPFSVEETLSRLGVTFYGNGGIGEGFIYASPSTLLVCNLW*
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mRNA from alignment at C-linearis_contig73:815308..816286+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig73.14977.1 ID=mRNA_C-linearis_contig73.14977.1|Name=mRNA_C-linearis_contig73.14977.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=979bp|location=Sequence derived from alignment at C-linearis_contig73:815308..816286+ (Chordaria linearis ClinC8C monoicous)
GGCGGCGATGGCGTTGGCGGCACGCCGAGCGGAAGCGACGCTGAAGGTGT
CGAGCAGGGGCCCGAGCTACTTCGAGTCCCAAACGCTTCCGTGCCCCCCG
CTGCTGCCACTGCACCCGGCCACCCAAGCCGCTTCTGACGGCGTGAACGG
TCTGCCTATTCCCGACCGGGTGGCGCAGTTTGCGGTGACGTGCGGGTTGG
GGGCAAGAGTAGCTCCGCAGTTACTCCCGCTGATGATTTCATCAGTGTAT
GGAGAGGCGTATGCACGCAGCGTTACGGTCATGTCGGCCGAGGTTGTGGA
GAACATGATTGACGTCTTCTGGCGAAACGAGATCGCGCCGTTCAGCGTGG
AGGAAACCCTCTCCAGGCTGGGTGTCACCTTTTACGGCAACGGGGGTATC
GGTGAGGTGAGAAATGTTTAGTTGCGAGGCGTGCGCAGAGGAAGAGGTAC
CACGGTCTTGTTCTCATGTATGTTTCGGGACGCGGTTTTATGTCTGGTAC
TACCCTCTCGAGTTATGATAGTTCGGTGTTCGTGCAACCTAGCTGTGGAT
AGCTCACGCCTCCTGCTGGTGAAGCATAAGTCGTGCCTTGTGGATCGACC
GCCCGCCACGGCTCAAAGTCGATGTTGCAACTGAAACACGTTCGGTGCCT
GTGCTTGCTTGTTTCCCTGCGGTGTGCGAACCCAACACACAGCAATATCT
TGAGAGGAGTGCCACTAGCAGCACTAATTCAGCACTACTTTCGATATCGC
GCCGACCCTACCTCAACACAACATCTTACCCCGACCATCCCCGTTTCCAT
GCAGGGCTTCATCTACGCCTCGCCGTCAACGCTATTGGTATGTAACCTGT
GGTAGGTGTATACCTTGACGATGTGGCACTGTGTAGAAACAGTGTGCAGA
GGCTCACAGAGTGACTGTTAAGTACACTTGGATGTAGACCAGATAAATGG
TGTTAATGTGGCGCTTAATTGGCCAAGAA
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Coding sequence (CDS) from alignment at C-linearis_contig73:815308..816286+

>mRNA_C-linearis_contig73.14977.1 ID=mRNA_C-linearis_contig73.14977.1|Name=mRNA_C-linearis_contig73.14977.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=900bp|location=Sequence derived from alignment at C-linearis_contig73:815308..816286+ (Chordaria linearis ClinC8C monoicous)
ATGGCGTTGGCGGCACGCCGAGCGGAAGCGACGCTGAAGGTGTCGAGCAG
GGGCCCGAGCTACTTCGAGTCCCAAACGCTTCCGTGCCCCCCGCTGCTGC
CACTGCACCCGGCCACCCAAGCCGCTTCTGACGGCGTGAACGGTCTGCCT
ATTCCCGACCGGGTGGCGCAGTTTGCGGTGACGTGCGGGTTGGGGGCAAG
AGTAGCTCCGCAGTTACTCCCGCTGATGATTTCATCAGTGTATGGAGAGG
CGTATGCACGCAGCGTTACGGTCATGTCGGCCGAGGTTGTGGAGAACATG
ATTGACGTCTTCTGGCGAAACGAGATCGCGCCGTTCAGCGTGGAGGAAAC
CCTCTCCAGGCTGGGTGTCACCTTTTACGGCAACGGGGGTATCGGTGAGA
TGGCGTTGGCGGCACGCCGAGCGGAAGCGACGCTGAAGGTGTCGAGCAGG
GGCCCGAGCTACTTCGAGTCCCAAACGCTTCCGTGCCCCCCGCTGCTGCC
ACTGCACCCGGCCACCCAAGCCGCTTCTGACGGCGTGAACGGTCTGCCTA
TTCCCGACCGGGTGGCGCAGTTTGCGGTGACGTGCGGGTTGGGGGCAAGA
GTAGCTCCGCAGTTACTCCCGCTGATGATTTCATCAGTGTATGGAGAGGC
GTATGCACGCAGCGTTACGGTCATGTCGGCCGAGGTTGTGGAGAACATGA
TTGACGTCTTCTGGCGAAACGAGATCGCGCCGTTCAGCGTGGAGGAAACC
CTCTCCAGGCTGGGTGTCACCTTTTACGGCAACGGGGGTATCGGTGAGGG
CTTCATCTACGCCTCGCCGTCAACGCTATTGGTATGTAACCTGTGGTAGG
GCTTCATCTACGCCTCGCCGTCAACGCTATTGGTATGTAACCTGTGGTAG
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