mRNA_C-linearis_contig73.14968.1 (mRNA) Chordaria linearis ClinC8C monoicous
|
Overview
Homology
BLAST of mRNA_C-linearis_contig73.14968.1 vs. uniprot
Match: D7FX73_ECTSI (DRY_EERY domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX73_ECTSI) HSP 1 Score: 589 bits (1519), Expect = 4.920e-193 Identity = 385/520 (74.04%), Postives = 405/520 (77.88%), Query Frame = 3
Query: 48 MADYYYEARKHDKWLRKHAKENKARKERMKQFQRAHSRDHHQSLIVEGTSCKLYRDPAAGAVVEAALMPWNGRHDVLIDRFDARAVLDMVPLSPKDTGDHREKKGLETFLSFERYRGIVDAHRVGMGEKEHASAVSKQVQEKLSDIARFHKGEPDAAEIAAAKEAQEKRNKKAETKAALKEAKNAGVHGHYGPAGGADAATGTAGGGP-PSRGRGAEMALKYGGDVVAGKGXXXXXXXXXXXXXXXXXXE--------AQLDPEILALIEKEVGGGAGGMADGESGSDHDXXXXXXXXXXXXXXXXXXXXXX----NEDAAQALAAAQDRFAEDYGISERRSGYGYSRLLRYERRHRAQHRANRAEEVDAARKRKRPKNKADGTPLEDGGDGGRWGGTVPGTRSSRLGSSLRDSPTYEDFGDPLEARRKKRRXXXXXXXXXXXXXXXX-AGRGRQYISSFEVSDSKPPGGDNGSGSDASLXXXXXXXXXXXXXX-SHLALLENFFPTLADSLRRHLEKKE 1562
MADYYYEARKHDKWLRKHAKENKARKERMKQFQRAHSRDHHQSLI+EG CKLYRDPAAGAVVE ALMPWNGR DVLIDRFDARAVLDMVPLSPK TGDHREKKGLETFLSFERYRGIVDA RVG+GEKEHA AVSKQV+EKLSDIARF KGEPDAAE+AAAKEAQ+KRNKKAETKAA+KEAKNAGVHGHYGP G GG P PSRGRGAE+ALKYGGDVV GK XXXXXXXXXXXXXXXX AQLDPEILALIEKEVG XXXXXXXXXXXXXXXXXXXXXX N DAAQAL+A+QD FAEDYGISE+RSGY YSRLLRYERRHRAQHRANR EVDAA+KRK+PK KADGTP+E+ G LGSSLRDSPTYEDFGDPLEARR+KRR AGRGRQYISSFE+SDSK GG +G SD SL +HL LL+NFFPTLAD+LRRHLEKKE
Sbjct: 1 MADYYYEARKHDKWLRKHAKENKARKERMKQFQRAHSRDHHQSLIIEGRPCKLYRDPAAGAVVEGALMPWNGRRDVLIDRFDARAVLDMVPLSPKGTGDHREKKGLETFLSFERYRGIVDAQRVGLGEKEHALAVSKQVEEKLSDIARFKKGEPDAAELAAAKEAQDKRNKKAETKAAIKEAKNAGVHGHYGPGAGGXXXXXXXGGVPLPSRGRGAEVALKYGGDVVGGKSAGXXXXXXXXXXXXXXXXXXXXXXXXXAQLDPEILALIEKEVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDHKNADAAQALSASQDLFAEDYGISEKRSGYSYSRLLRYERRHRAQHRANRMAEVDAAKKRKKPKKKADGTPVEE----------ENGLSRPYLGSSLRDSPTYEDFGDPLEARRQKRREDRERAGGSARDAAGNGAGRGRQYISSFEISDSKAGGGKSGXXSDGSLLGSESEGDEGGGSGGTHLVLLQNFFPTLADTLRRHLEKKE 510
BLAST of mRNA_C-linearis_contig73.14968.1 vs. uniprot
Match: A0A6H5L0Z8_9PHAE (DRY_EERY domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Z8_9PHAE) HSP 1 Score: 356 bits (914), Expect = 1.250e-110 Identity = 182/196 (92.86%), Postives = 188/196 (95.92%), Query Frame = 3
Query: 48 MADYYYEARKHDKWLRKHAKENKARKERMKQFQRAHSRDHHQSLIVEGTSCKLYRDPAAGAVVEAALMPWNGRHDVLIDRFDARAVLDMVPLSPKDTGDHREKKGLETFLSFERYRGIVDAHRVGMGEKEHASAVSKQVQEKLSDIARFHKGEPDAAEIAAAKEAQEKRNKKAETKAALKEAKNAGVHGHYGPAGG 635
MADYYYEARKHDKWLRKHAKENKARKERMKQFQRAHSRDHHQSLI+EG CKLYRDPAAGAVVE ALMPWNGR DVLIDRFDARAVLDMVPLSPKDTGDHREKKGLETFLSFERYRGIVDA RVG+GEKEHA AVSKQV+EKLSDIARF KGEPDAAE+AAAKEAQ+KRNKKAETKAA+KEAKNAGVHGHYGP GG
Sbjct: 1 MADYYYEARKHDKWLRKHAKENKARKERMKQFQRAHSRDHHQSLIIEGRPCKLYRDPAAGAVVEGALMPWNGRRDVLIDRFDARAVLDMVPLSPKDTGDHREKKGLETFLSFERYRGIVDAQRVGLGEKEHALAVSKQVEEKLSDIARFKKGEPDAAELAAAKEAQDKRNKKAETKAAIKEAKNAGVHGHYGPGGG 196
BLAST of mRNA_C-linearis_contig73.14968.1 vs. uniprot
Match: A0A6H5KYK4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYK4_9PHAE) HSP 1 Score: 288 bits (736), Expect = 4.470e-80 Identity = 338/514 (65.76%), Postives = 359/514 (69.84%), Query Frame = 3
Query: 657 AGGGPP--SRGRGAEMALKYGGDVVAGKGXXXXXXXXXXXXXXXXXXEAQLDPEILALIEKEVGGGAGGMADGESGSDHDXXXXXXXXXXXXXXXXXXXXXX------NED--AAQALAAAQDRFAEDYGISERRSGYGYSRLLRYERRHRAQHRANRAEEVDAARKRKRPKNKADGTPLEDGGDGGRWGGTVPGTRSSRLGSSLRDSPTYEDFGDPLEARRKKRRXXXXXXXXXXXXXXXXAG-RGRQYISSFEVSDSKPPGGDNGSGSDASLXXXXXXXXXXXXXX-SHLALLENFFPTLADSLRRHLEKKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGGSSRTGRAGSGSKQTKA---------------------PPKGDKKLTPMEMMKLRMRKALDSQLQKDKTAIAKKSTKESRMAELDRKQQRLDEEQHERLQSK 2099
AGGG P SRGRGAE+ALKYGGDVV GK XXXXXXXXXXXXXXXXXX AQLDPEILALIEKE XXXXXXXXXXXXXXXXXXXXXX N D AAQAL+AAQD FAEDYGISE+RSGY YSRLLRYERRHRA HRANR EVDAA+KRK+PK KADGTP+E+ G+ LGSSLRDSPTYEDFGDPLEARR+KRR G RGRQYISSFE+SDSK GG +GSGSD SL +HL LLENFFPTLAD+LRRHLEKK+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX X XXXXXXXXXXXXXXX S R R G PPK +KKLTPMEMMKLRMR+ALDSQLQKDKTAIAKKSTK+S+MAELDRKQQ+ EEQHERLQ++
Sbjct: 2 AGGGMPLPSRGRGAEVALKYGGDVVGGKSXXXXXXXXXXXXXXXXXXXAQLDPEILALIEKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDHKNADDLAAQALSAAQDLFAEDYGISEKRSGYSYSRLLRYERRHRALHRANRMAEVDAAKKRKKPKKKADGTPVEE----------ENGSSRPYLGSSLRDSPTYEDFGDPLEARRQKRREDRERAGGSARDAAGNGGGRGRQYISSFEISDSKAGGGKSGSGSDGSLLGSESEGDEGGGSGGTHLILLENFFPTLADTLRRHLEKKQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGSSRRSRRDSRSRXSGRDGXXXXXXXXXXXXXXX------SGRGRRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPPKAEKKLTPMEMMKLRMRRALDSQLQKDKTAIAKKSTKDSKMAELDRKQQQXXEEQHERLQAR 499
BLAST of mRNA_C-linearis_contig73.14968.1 vs. uniprot
Match: A0A1D1XUM7_9ARAE (CLK4-associating serine/arginine rich protein (Fragment) n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1XUM7_9ARAE) HSP 1 Score: 78.2 bits (191), Expect = 1.640e-12 Identity = 43/112 (38.39%), Postives = 66/112 (58.93%), Query Frame = 3
Query: 162 DHHQSLIVEGTSCKLYRDPAAGAVVE--AALMPWNGRHDVLIDRFDARAVLDMVPLSPKDTGDHR------EKKGLETFLSFERYRGIVDAHRVGMGEKEHASAVSKQVQEK 473
D QSL V GT C++YRD + L+PWNG+ D+LIDRFD RA+LD + S D+ HR E++ +E F++FERYR ++ R G ++E +++++ K
Sbjct: 36 DPQQSLQVAGTRCRMYRDDGLYQATQDQQGLIPWNGKQDILIDRFDGRALLDFIRDS--DSRPHRVQEKTEEEEEVEEFVNFERYRDLIMHRRRGFTDEEGLQFANQELEAK 145
BLAST of mRNA_C-linearis_contig73.14968.1 vs. uniprot
Match: A0A453HXP9_AEGTS (DRY_EERY domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453HXP9_AEGTS) HSP 1 Score: 79.7 bits (195), Expect = 1.640e-12 Identity = 45/127 (35.43%), Postives = 70/127 (55.12%), Query Frame = 3
Query: 162 DHHQSLIVEGTSCKLYRDPAAGAVVE--AALMPWNGRHDVLIDRFDARAVLDMVPLSPKDTGDHREK----KGLETFLSFERYRGIVDAHRVGMGEKEHASAVSKQVQEKLSDIARFHKGEPDAAEI 524
D HQSL V G C+++RD + E L+PWNG+ D+LIDRFD RA+LD + S + +EK + LE F++FERYR ++ R G ++ V+++++ K F K + A +
Sbjct: 36 DPHQSLQVSGARCRVHRDDSLYQATEDQQGLIPWNGKQDILIDRFDGRALLDFIRDSSSRSFQTQEKSEEEEELEDFVNFERYRDLIKHRRRGFSDEAGLQHVAQELEAKAILPFSFEKSQSSQAPV 162
BLAST of mRNA_C-linearis_contig73.14968.1 vs. uniprot
Match: UPI001FB0D38E (CLK4-associating serine/arginine rich protein isoform X1 n=2 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB0D38E) HSP 1 Score: 83.2 bits (204), Expect = 1.690e-12 Identity = 44/120 (36.67%), Postives = 69/120 (57.50%), Query Frame = 3
Query: 162 DHHQSLIVEGTSCKLYRDPAAGAVVE--AALMPWNGRHDVLIDRFDARAVLDMV--PLSPKDTGDHREKKGLETFLSFERYRGIVDAHRVGMGEKEHASAVSKQVQEKLSDIARFHKGEP 509
D QS+ GT C+LYRD + L+PWNG+ D+LIDRFD RA+LD + P+S + E+K LE F++FERYR ++ R G +++ V+++++ K F + +P
Sbjct: 36 DPQQSIQAIGTRCRLYRDEGLYQATQDQQGLIPWNGKQDILIDRFDGRALLDFIRNPVSRRAPEKTEEEKELEEFVNFERYRDLIKHRRRGFLDEDGLQHVNQEMETKAVASIGFDRSQP 155
BLAST of mRNA_C-linearis_contig73.14968.1 vs. uniprot
Match: UPI000C1D555D (CLK4-associating serine/arginine rich protein-like isoform X1 n=2 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D555D) HSP 1 Score: 82.8 bits (203), Expect = 2.000e-12 Identity = 51/148 (34.46%), Postives = 82/148 (55.41%), Query Frame = 3
Query: 60 YYEARKHDKWLRKHAKENKARKERMKQFQRAHSRDHHQSLIVEGTSCKLYRDPAAGAVVE--AALMPWNGRHDVLIDRFDARAVLDMVPLSPKDTGDHR------EKKGLETFLSFERYRGIVDAHRVGMGEKEHASAVSKQVQEKLS 479
++EAR+ +K + + + R +R + D QS+ GT C+++RD A E L+PWNG+ D++IDRFD RA+LD + T HR E++ LE F+SFERYR ++ R G +KE V+++++ K+S
Sbjct: 2 WHEARRSEKKVHEMMDAARKRAQRRAIYLAKRRGDPSQSIQAVGTRCRIHRDDALYQATEDQQGLIPWNGKQDIMIDRFDGRALLDFI--RDGSTRRHRVSEITEEEEELEEFVSFERYRDLIKHRRRGFTDKEGLQHVNQEMEAKIS 147
BLAST of mRNA_C-linearis_contig73.14968.1 vs. uniprot
Match: A0A444ZA71_ARAHY (DRY_EERY domain-containing protein n=4 Tax=Arachis TaxID=3817 RepID=A0A444ZA71_ARAHY) HSP 1 Score: 82.8 bits (203), Expect = 2.340e-12 Identity = 51/148 (34.46%), Postives = 82/148 (55.41%), Query Frame = 3
Query: 60 YYEARKHDKWLRKHAKENKARKERMKQFQRAHSRDHHQSLIVEGTSCKLYRDPAAGAVVE--AALMPWNGRHDVLIDRFDARAVLDMVPLSPKDTGDHR------EKKGLETFLSFERYRGIVDAHRVGMGEKEHASAVSKQVQEKLS 479
++EAR+ +K + + R +R + D HQS+ + G C+ YRD A + L+PWNG+ DVLIDRFD RA+LD + +DTG R E++ LE F++FERYR ++ R G ++E V+++++ K +
Sbjct: 2 WHEARRSEKKVHDMMDAARKRAQRRAVYLAKRRGDPHQSIQLLGFRCRTYRDDALYQATQDQQGLIPWNGKQDVLIDRFDGRALLDFI----RDTGHRRIQEKSEEEEELEEFVNFERYRDLIKHRRRGYTDEEALQHVNQEMEAKAA 145
BLAST of mRNA_C-linearis_contig73.14968.1 vs. uniprot
Match: A0A7J7CPY7_TRIWF (CLK4-associating serine/arginine rich protein n=1 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7CPY7_TRIWF) HSP 1 Score: 79.3 bits (194), Expect = 2.920e-12 Identity = 53/167 (31.74%), Postives = 90/167 (53.89%), Query Frame = 3
Query: 60 YYEARKHDKWLRKHAKENKARKERMKQFQRAHSRDHHQSLIVEGTSCKLYRDPAAGAVVE--AALMPWNGRHDVLIDRFDARAVLDMVPLS------PKDTGDHREKKGLETFLSFERYRGIVDAHRVGMGEKEHASAVSKQVQEKLSDIARFHKGEPDAAEIAAAK 536
++EAR+ ++ + + R +R F D QS+ V G+ C+ YRD A + L+PWNG+ D+LIDRFD RA+LD + S P++ + E+ LE F++FERYR ++ R G ++E V+++++ K+ +A F P + +A+K
Sbjct: 2 WHEARRSERKVHDMMDAARKRAQRRAVFLAKRRGDPQQSIQVMGSRCRTYRDDALYQATQDQQGLIPWNGKQDILIDRFDGRALLDFIRESGSRHFRPQEKSEEEEE--LEEFVNFERYRDLIKHRRRGFTDEEGLHHVNQEMEAKV--VAPFTSDRPQLPQPSASK 164
BLAST of mRNA_C-linearis_contig73.14968.1 vs. uniprot
Match: B9F8V4_ORYSJ (DRY_EERY domain-containing protein n=6 Tax=Oryza TaxID=4527 RepID=B9F8V4_ORYSJ) HSP 1 Score: 81.6 bits (200), Expect = 4.240e-12 Identity = 50/146 (34.25%), Postives = 79/146 (54.11%), Query Frame = 3
Query: 60 YYEARKHDKWLRKHAKENKARKERMKQFQRAHSRDHHQSLIVEGTSCKLYRDPAAGAVVE--AALMPWNGRHDVLIDRFDARAVLDMV------PLSPKDTGDHREKKGLETFLSFERYRGIVDAHRVGMGEKEHASAVSKQVQEK 473
++EARK ++ + + R +R + D HQSL V G C+++RD A E L+PWNG+ DVLIDRFD RA+LD + P ++ + E+ LE F++FERYR ++ R G ++ VS++++ K
Sbjct: 2 WHEARKSERKVHDLMDAARRRAQRRAAYLARRRGDPHQSLQVSGARCRVHRDDALYQATEDQQGLIPWNGKQDVLIDRFDGRALLDFIRDSSSRPFRVQEKSEEEEE--LEEFVNFERYRDLIKHRRRGFSDEAGLQHVSQELEAK 145 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig73.14968.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig73.14968.1 >prot_C-linearis_contig73.14968.1 ID=prot_C-linearis_contig73.14968.1|Name=mRNA_C-linearis_contig73.14968.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=901bp MADYYYEARKHDKWLRKHAKENKARKERMKQFQRAHSRDHHQSLIVEGTSback to top mRNA from alignment at C-linearis_contig73:674168..688441- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig73.14968.1 ID=mRNA_C-linearis_contig73.14968.1|Name=mRNA_C-linearis_contig73.14968.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=14274bp|location=Sequence derived from alignment at C-linearis_contig73:674168..688441- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig73:674168..688441- >mRNA_C-linearis_contig73.14968.1 ID=mRNA_C-linearis_contig73.14968.1|Name=mRNA_C-linearis_contig73.14968.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=5406bp|location=Sequence derived from alignment at C-linearis_contig73:674168..688441- (Chordaria linearis ClinC8C monoicous)back to top |