mRNA_C-linearis_contig73.14967.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig73.14967.1 vs. uniprot
Match: D7FH19_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH19_ECTSI) HSP 1 Score: 364 bits (934), Expect = 1.270e-103 Identity = 184/255 (72.16%), Postives = 205/255 (80.39%), Query Frame = 2
Query: 566 PCLGKLASVPGAAPTLPPTYVQRTTMLEEEVAGLTDPHRSASVTHCLLGMGGAGKTLMASSVVRGERVRASFKDGVFWIPVGYESKDVALLLEDLAVELARAPTDKPHRCPDLFNGAEEALRHLSAVRAASDLSCLIVLDNVWSVEVANAFASTGFHVLVTTRQRKVISTAHFGLCTEVGDMSKEDALEVLRKASQARGPLPAEQALQVARDCGMLPLTLGMVGTLVRDQPLNPTSWRAVYESLQENHAKYHQME 1330
P LG LA +P AP LP TYVQRT MLEE V LT PHRSAS THCLLGMGG GKTL+ASSVVR +RVRA FK G+FW+PVG E KDVALLLE LAVEL+R PTD P CP+ F+GAEEALRHLS+V A L CL+VLDNVW+VEV NAFASTGFHVLVTTRQR VIS H G+ TEVGDMS+EDALEVL KASQA GPLPAE+A QVA DCGMLPL LGM+G L +DQPL+P SWRAV++ LQE A + +E
Sbjct: 227 PSLGALAEIPREAPVLPTTYVQRTAMLEEVVDDLTHPHRSASATHCLLGMGGGGKTLIASSVVRDDRVRARFKRGIFWVPVGREGKDVALLLEHLAVELSRVPTDTPRSCPNRFSGAEEALRHLSSVCAEDGLRCLVVLDNVWNVEVVNAFASTGFHVLVTTRQRAVISAVHAGVWTEVGDMSEEDALEVLSKASQADGPLPAEEARQVALDCGMLPLALGMIGALAKDQPLDPLSWRAVHKKLQEKRAMFRDVE 481
BLAST of mRNA_C-linearis_contig73.14967.1 vs. uniprot
Match: A0A6H5L982_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L982_9PHAE) HSP 1 Score: 191 bits (486), Expect = 1.770e-48 Identity = 103/249 (41.37%), Postives = 147/249 (59.04%), Query Frame = 2
Query: 566 PCLGKLASVPGAAPTLPPTYVQRTTMLEEEVAGLTDPHRSASVTHCLLGMGGAGKTLMASSVVRGERVRASFKDGVFWIPVGYESK-DVALLLEDLAVELARAPTDKPHRCPDLFNGAEEALRHLSAVRAASDLSCLIVLDNVWSVEVANAFASTGFHVLVTTRQRKVISTAHFGLCTEVGDMSKEDALEVLRKASQARGPLPAEQALQVARDCGMLPLTLGMVGTL--VRDQPLNPTSWRAVYESLQE 1303
P G++A +P AP LPP +V+R+ ++E L R+ L G+ G GKT+ ASSVVR E VR SFKDG+FW+ VG + LL+ LA +LA AP+++P P F E + HL V +L CL+VLDNVW E+ F TGF LVTTR ++ +G CT V +++ +ALE+L+KAS+A +P ++ L+VA DCG LPL + ++G + R P +P +WR V+ L E
Sbjct: 184 PKTGEMAKIPHNAPALPPAFVERSGLVEAVAQDLAAAERATDTADVLRGIPGGGKTVAASSVVRCENVRRSFKDGIFWVQVGQVGTGNPTALLKGLAEDLAHAPSNRPRTVPHEFRDVEHVVSHLVGVLEQGNLRCLVVLDNVWDREMVPLFLRTGFRCLVTTRDVAMVPRHLWGTCTPVDMLTEAEALELLKKASRATSSIPRDEGLEVADDCGFLPLAIAIIGAMGSSRVNPHSPETWRGVHARLVE 432
BLAST of mRNA_C-linearis_contig73.14967.1 vs. uniprot
Match: A0A6H5LJA6_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJA6_9PHAE) HSP 1 Score: 160 bits (406), Expect = 9.070e-38 Identity = 101/251 (40.24%), Postives = 147/251 (58.57%), Query Frame = 2
Query: 581 LASVPGAAPTLPPTYVQRTTMLEEEVAGLTDPHRSASVTHCLLGMGGAGKTLMASSVVRGERVRASFKDGVFWIPVGYESKDVAL-LLEDLAVELARAPTDKPHRCPDLFNGAEEALRHLSAVRAASDLSCLIVLDNVWSVEVANAFASTGFHVLVTTRQRKVISTAHFGLCTEVGDMSKEDALEVLRKASQARGPLPAEQALQVARD---CGMLPLTLGMVGTL--VRDQPLNPTSWRAVYESLQENHAK 1315
+A+VP A TLP +YV+R + +E GL P + + ++GMGG GKT++ S+VVR VR F+ GVFW+ VG +K+ L LL+ LA E++ APTD PH P + E+ +HL+ V +A L+VLD+VW EV +A S G VLVTTR R V+ + G E+GDM++E+ALE+L K S+ G E Q+ + CG LPL L + G++ V+ + L +W + + EN AK
Sbjct: 1 MAAVPAGALTLPQSYVERAAV-QEVADGLIKPEEPRA-PYAVVGMGGGGKTMLVSAVVRKSNVREHFRGGVFWMRVGRHAKNSLLSLLQGLAREMSAAPTDTPHGVPHVLESLEQVKQHLATVASAGTSPRLVVLDDVWEREVVDALLSLGLKVLVTTRDRSVVGVS--GGLLELGDMTEEEALELLLKTSRTVGQPGHEVRTQMTKVVVLCGHLPLVLAIAGSMSVVKGKGLTAVAWEELIKEF-ENVAK 246
BLAST of mRNA_C-linearis_contig73.14967.1 vs. uniprot
Match: A0A6H5KXS7_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS7_9PHAE) HSP 1 Score: 162 bits (410), Expect = 1.600e-37 Identity = 107/258 (41.47%), Postives = 153/258 (59.30%), Query Frame = 2
Query: 566 PCLGKLASVPGAAPTLP-PTYVQRTTMLEEEVAGLTDPHRSASVTHCLLGMGGAGKTLMASSVVRGERVRASFKDGVFWIPVGYESKDVAL-LLEDLAVELARAPTDKPHRCPDLFNGAEEALRHLSAVRAASDLSCLIVLDNVWSVEVANAFASTGFHVLVTTRQRKVISTAHFGLCTEVGDMSKEDALEVLRKASQARGPLPAEQA----LQVARDCGMLPLTLGMVGTL--VRDQPLNPTSWRAVYESLQENHAK 1315
P L +A+VP A LP +YV+R + +E GLT P + ++GMGG GK+++AS+VVR VR F+ G+FW+ VG +K L LL+ LA E+ A TD PH P + +G E+ +HL+AV + L+VLD+VW EV +AF GF VL+TTR R V+ L EVGDM++E+ALE+LRK+S A G P + +V CG LPL L + G++ V+ + L +W+ + E+L EN AK
Sbjct: 200 PSLPDMAAVPAGALELPCSSYVERAAV-QEVADGLTSPE-DPRAPYTVVGMGGGGKSVLASAVVRKPSVREHFRGGIFWVRVGRGAKSSLLALLQGLAREMGAARTDAPHTVPHVLDGLEQVKQHLAAVASTGTFPRLVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVVVVPAGRL--EVGDMTEEEALELLRKSSGAVGQ-PGDDVRTKMTKVVALCGHLPLVLAIAGSMSVVKGKGLTAVAWKELAENL-ENVAK 451
BLAST of mRNA_C-linearis_contig73.14967.1 vs. uniprot
Match: D7G722_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI) HSP 1 Score: 155 bits (392), Expect = 1.500e-34 Identity = 104/258 (40.31%), Postives = 150/258 (58.14%), Query Frame = 2
Query: 566 PCLGKLASVPGAAPTLPPT-YVQRTTMLEEEVAGLTDPHRSASVTHCLLGMGGAGKTLMASSVVRGERVRASFKDGVFWIPVGYESKDVAL-LLEDLAVELARAPTDKPHRCPDLFNGAEEALRHLSAVRAASDLSCLIVLDNVWSVEVANAFASTGFHVLVTTRQRKVISTAHFGLCTEVGDMSKEDALEVLRKASQARGPLPAEQA----LQVARDCGMLPLTLGMVGTL--VRDQPLNPTSWRAVYESLQENHAK 1315
P L +A+VP A LP + YV+R + +E GLT P S + + ++GMGG GK+++AS+ VR VR F+ G+FW+ VG +K L LL+ LA ++ APTD PH P + + E+ +HL+AV + L+VLD+VW EV +AF GF VL+TTR R V+ L E+GDM++E+ALE+LRK S G P + +V CG LPL L + G++ VR + L +W + + L EN AK
Sbjct: 254 PSLPDMAAVPTGALELPSSSYVERAAV-QEVADGLTTPEESRA-PYTVVGMGGGGKSVLASAAVRKPSVREHFRGGIFWVRVGRGAKSSLLALLQGLAWDVGAAPTDAPHGVPHVLDRLEQVQQHLAAVASTGTSPRLVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVVGLPAGRL--ELGDMTEEEALELLRKTSGTVGQ-PGDDVRTKMTKVVALCGHLPLVLAIAGSMSVVRGKGLTAVAWEELAKEL-ENVAK 505
BLAST of mRNA_C-linearis_contig73.14967.1 vs. uniprot
Match: D7G720_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G720_ECTSI) HSP 1 Score: 154 bits (389), Expect = 4.040e-34 Identity = 104/258 (40.31%), Postives = 151/258 (58.53%), Query Frame = 2
Query: 566 PCLGKLASVPGAAPTLPPT-YVQRTTMLEEEVAGLTDPHRSASVTHCLLGMGGAGKTLMASSVVRGERVRASFKDGVFWIPVGYESKDVAL-LLEDLAVELARAPTDKPHRCPDLFNGAEEALRHLSAVRAASDLSCLIVLDNVWSVEVANAFASTGFHVLVTTRQRKVISTAHFGLCTEVGDMSKEDALEVLRKASQARGPLPAEQA----LQVARDCGMLPLTLGMVGTL--VRDQPLNPTSWRAVYESLQENHAK 1315
P L +A+VP A LP + YV+R + +E GLT P S + + ++GMGG GK+++AS+VVR VR F+ G+FW+ VG +K L LL+ LA ++ APTD P P + + E+ +HL+AV + L+VLD+VW EV +AF GF VL+TTR R V+ L E+GD+++E+ALE+LRK S A G P + +V CG LPL L + G++ VR + L +W + + L EN AK
Sbjct: 237 PSLPDMAAVPAGALELPSSSYVERAAV-QEVADGLTAPEESRA-PYTVVGMGGGGKSVLASAVVRKPSVREHFRGGIFWVRVGRGAKSSLLALLQGLARDVGAAPTDAPCGVPRVLDSLEQVRQHLAAVTSTGTSQRLVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVVGVPAGRL--ELGDVTEEEALELLRKTSGAVGQ-PGDDVRTKMTKVVALCGHLPLVLAIAGSMSVVRGKGLTAVAWEELAKEL-ENVAK 488
BLAST of mRNA_C-linearis_contig73.14967.1 vs. uniprot
Match: D8LPV9_ECTSI (NB-ARC and TPR repeat-containig protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPV9_ECTSI) HSP 1 Score: 152 bits (384), Expect = 1.150e-33 Identity = 99/267 (37.08%), Postives = 152/267 (56.93%), Query Frame = 2
Query: 521 KSLSTSRI*LMPPWSPCLGKLASVPGAAPTLPPTYVQRTTMLEEEVAGLTDPHRSASVTHCLLGMGGAGKTLMASSVVRGERVRASFKDGVFWIPVGY-ESKDVALLLEDLAVELARAPTDKPHRCPDLFNGAEEALRHLSAVRAASDLSCLIVLDNVWSVEVANAFASTGFHVLVTTRQRKVISTAHFGLCTEVGDMSKEDALEVLRKASQARGPLPAE----QALQVARDCGMLPLTLGMVGTL--VRDQPLNPTSWRAVYESLQ 1300
K+ ST ++PP P + A+VP A LP +YV+R + +E + L DP + A + ++GMGG GKT++AS++VR V F+ G+FW+ +G +K + L+ LA E+ APTD PH P +F+ E+ ++HL+AV + L+VLD+VW EV AF G VLVTTR R ++ G E+GDM++++ALE+L K S G P + Q +V CG LPL L + G++ V+ + L +W + E +
Sbjct: 220 KAFSTMIRDVLPPTLP---QRAAVPTGALALPRSYVERPGV-QEAMGDLMDPEK-ALAPYMIVGMGGGGKTVLASALVRKSSVLEHFRGGIFWMEMGRGANKSLLHRLQGLAREMGAAPTDAPHGVPHVFDSLEQVMQHLAAVVSRGSSPRLVVLDDVWEREVVAAFLGVGLKVLVTTRDRSIVGVP--GGLLELGDMAEDEALELLWKTSGTVGQ-PGDGVRTQMTKVVDRCGRLPLVLAIAGSMPVVKGKGLKDGAWEELIEEFE 478
BLAST of mRNA_C-linearis_contig73.14967.1 vs. uniprot
Match: A0A6H5KU94_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU94_9PHAE) HSP 1 Score: 146 bits (369), Expect = 6.910e-32 Identity = 96/253 (37.94%), Postives = 140/253 (55.34%), Query Frame = 2
Query: 566 PCLGKLASVPGAAPTLPPT-YVQRTTMLEEEVAGLTDPHRSASVTHCLLGMGGAGKTLMASSVVRGERVRASFKDGVFWIPVGYESKDVAL-LLEDLAVELARAPTDKPHRCPDLFNGAEEALRHLSAVRAASDLSCLIVLDNVWSVEVANAFASTGFHVLVTTRQRKVISTAHFGLCTEVGDMSKEDALEVLRKASQARGPLPAEQA----LQVARDCGMLPLTLGMVGTL--VRDQPLNPTSWRAVYESLQ 1300
P L +A VP A L + YV+R + + G+T+P + + + GMGG GK+++AS+VVR VR F+ G+FW+ VG +K L LL+ L ++ APTD PH P + + E+ RHL AV + L+VLD+VW EV +A GF VLVTTR R V+ C E+GDM++E+ALE+L K S G P + +V CG LPL L + G+L V+ + L +W + + L+
Sbjct: 131 PSLPDMAKVPAEAVALSDSLYVERAAV-RKVADGITNPEEPRA-PYTVFGMGGGGKSVLASAVVRKSSVREHFRGGIFWLTVGRGAKKRLLPLLQGLTGDMGAAPTDTPHGVPHVLDSLEQVQRHLGAVASTGTSPRLVVLDDVWEREVVDALLPLGFKVLVTTRDRSVVGVPT--RCLELGDMTEEEALELLLKTSGTVGR-PGDSVRTVMTKVVTLCGRLPLVLAIAGSLPVVKGKGLTAGAWGKLIDELE 378
BLAST of mRNA_C-linearis_contig73.14967.1 vs. uniprot
Match: D7FUD7_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD7_ECTSI) HSP 1 Score: 146 bits (369), Expect = 8.850e-32 Identity = 98/256 (38.28%), Postives = 148/256 (57.81%), Query Frame = 2
Query: 566 PCLGKLASVPGAAPTLP-PTYVQRTTMLEEEVAGLTDPHRSASVTHCLLGMGGAGKTLMASSVVRGERVRASFKDGVFWIPVGYESKDVAL-LLEDLAVELARAPTDKPHRCPDLFNGAEEALRHLSAVRAASDLSCLIVLDNVWSVEVANAFASTGFHVLVTTRQRKVISTAHFGLCTEVGDMSKEDALEVLRKASQARGPLP--AEQALQVARDCGMLPLTLGMVGTL--VRDQPLNPTSWRAVYESLQENHAK 1315
P L +A VP A LP +YV+R + +E GLT+P + + ++G+GG GK+++AS+VVR VR F+ G+ W+ VG +K+ L LL+ LA E+ APTD PH P + E+ +HL+AV + + L+VLD+VW EV +AF GF +L+TTR R ++ L E+GDM++E+ALE+LRK S P + +V CG LPL L + G++ V+ + L +W + + EN AK
Sbjct: 39 PSLPDMAEVPVGALELPHSSYVERAAV-QEVADGLTNPEEPRT-PYTVVGIGGGGKSVLASAVVRMPSVREHFRGGISWVRVGRGAKNSLLPLLQGLAREVGAAPTDAPHGVPHALDSLEQVQQHLAAVASTRNSPRLVVLDDVWEREVVDAFVPLGFKLLLTTRDRSIVCDPAGRL--ELGDMTEEEALELLRKTSGTVDPGDDVRMKMTKVVALCGHLPLVLAIAGSMSAVKGKGLTAVAWEELAKEF-ENVAK 289
BLAST of mRNA_C-linearis_contig73.14967.1 vs. uniprot
Match: D8LGG5_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGG5_ECTSI) HSP 1 Score: 146 bits (368), Expect = 1.490e-31 Identity = 101/258 (39.15%), Postives = 151/258 (58.53%), Query Frame = 2
Query: 566 PCLGKLASVPGAAPTLPPTYVQRTTMLEEEVAGLTDPHRSASVTHCLLGMGGAGKTLMASSVVRGERVRASFKDGVFWIPVGYESKDVAL-LLEDLAVELARAPTDKPHRCPDLFNGAEEALRHLSAVRAASDLSC-LIVLDNVWSVEVANAFASTGFHVLVTTRQRKVISTAHFGLCTEVGDMSKEDALEVLRKASQARGPLPAE----QALQVARDCGMLPLTLGMVGTL--VRDQPLNPTSWRAVYESLQENHAK 1315
P L +A+VP A LP YV+R + +E GLT P + + ++G+GG GK+++AS+VVR VR F+ G+ W+ VG +K+ L LL+ LA E+ APTD PH P + + E+ +HL+AV A++ S L+VLD+VW EV +A GF VL+TTR V+ L ++GDM++E+ALE+LRK S G P + + +V CG LPL L + G++ V+ + L +W + +S EN AK
Sbjct: 212 PRLLDMAAVPAGALDLPRGYVERAAV-QEVADGLTAPEEPRA-PYTVVGLGGGGKSVLASAVVRKPSVREHFRGGISWVRVGRGAKNSLLPLLQGLAREMGVAPTDAPHAVPQVLDSLEQVQQHLAAVVASTGTSPRLVVLDDVWEREVVDALVPLGFKVLLTTRDWSVVVVPARRL--DLGDMTEEEALELLRKTSGTVGQ-PGDYVRMKMTKVVALCGHLPLVLAIAGSMSAVKGKGLTAVAWEELAKSF-ENVAK 463 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig73.14967.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig73.14967.1 >prot_C-linearis_contig73.14967.1 ID=prot_C-linearis_contig73.14967.1|Name=mRNA_C-linearis_contig73.14967.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=274bp MPPWSPCLGKLASVPGAAPTLPPTYVQRTTMLEEEVAGLTDPHRSASVTHback to top mRNA from alignment at C-linearis_contig73:655958..663150- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig73.14967.1 ID=mRNA_C-linearis_contig73.14967.1|Name=mRNA_C-linearis_contig73.14967.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=7193bp|location=Sequence derived from alignment at C-linearis_contig73:655958..663150- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig73:655958..663150- >mRNA_C-linearis_contig73.14967.1 ID=mRNA_C-linearis_contig73.14967.1|Name=mRNA_C-linearis_contig73.14967.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1644bp|location=Sequence derived from alignment at C-linearis_contig73:655958..663150- (Chordaria linearis ClinC8C monoicous)back to top |