mRNA_C-linearis_contig73.14966.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig73.14966.1 vs. uniprot
Match: A0A6H5LGC4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGC4_9PHAE) HSP 1 Score: 723 bits (1867), Expect = 5.430e-227 Identity = 709/1627 (43.58%), Postives = 819/1627 (50.34%), Query Frame = 2
Query: 1178 MRSDPSRYPAPNTVCYNAALMALMRRGRWREARGLLTEVAATAKAWGSDDGEXXXXXXXXXXQEAEVLDFLSYNSVIRACAAAGEAK---------------EALKTRDEMRAAGIAADAYTYEALAAACGMAGEWEAAEAVLREMMAGCAECAAGAGAGARAVTPPTATPAAPAAAGDTKGGDNAAAGGGSLVAETAAVEAEAVEAAXXXXXXXSNTYVGDAATAWNGDSAAAPPAPSPTAGHSYSSPSSASTATVGESWNQKLRHELRQRRRQEQLKNGVPPSPRMFHGLMEAYAQAGEWERALECLDDMLHGLKGALEGEQTAGAGQERVGVRAGVKPDSTSVGWAIQACATAGQWERALALLSGARSEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEMASLEARPVGQGAEAEGGNRSGFSSXXXXXXXXXXXXXQRTAGTGPAGVTKRGGDGETFAPWGGTVGPAAGGAFPPPSDSPVPRRSAESFRLVVEACRRAGDTRGALSAFAVMREEGFEPDLACFNEALRACAEGGGRLERAASFLEEVREAALEPNGVSYSAVLKACESCPNQKGAAKTAYDVIQTMIASSNAXXXXXXXXXXXXXXXXXXXXXXXXXXRAGGRGKSGLPTP--SPPDGRDFLAAVRACAGGRSLPGSSSLALRLLTDLKVSAVASXXXXXXXXXXXXXVGIVR--LLPEHYHAAMAACGRDGNSGGVLALLSELRRGGPEGGGAAGEEAAVGLRTAALXXXXXXXXXXXXXXXXSGSESMKEEEEEEARRTVEATRVATASGLVPALSSSATYAAAAAALADMGEWEWCLVLLEELEQHGAEHDXXXXXXXXXXXXXAEAGLRLSPPETAPXXXXXXXXXXXXXXXXXXXXXEEAETVLQVELDET---STPVATTYPNGDGEATEASAETLAA---YTATVRACGEGRAGVKAVVGVLDRMGWAGVAPGQGTYAAAISAFQACGGVWEGIQEGEGEGGREREAKGGVSVEGAAWALIDYEKDRLGTG-WASPFLYSAAIKACAEAGDIANGRQLFAEGRRAAGIATDNARDVAAAAVXXXXXXXXXXTAPAASARVNPGVEAVYMATLTLCAAAGDGNLARDVLRWMKMEGFQTTQEAYVLAIEACCAPAVREDS-SYPAAPAAMPLPP-------PLRPSSSIPPAPRPSTGGTSAEGTVGFRRTLFSQEERGRDRAVGGASQEPAXXXXXXXATLPRNPLPDNGGDASNAQGDGGSGKGVEVEVVGGARVGARRGFSVGDADVVVEEG--RSRTSDVKQAAAGRLII------------QPPPPSEKETEAEQ---FGWVAIPGGRETPPEFDEDGEE--VADAAVAMGGARPMDDVSKRYEGAGAATGDSGXXXXXXXXXXXXXXVLVAETPGTAGVVAASTGARLEGDGGMPVSPPVA----SRAGAVSVLSPVPATTAAR-------QAGVSSGERGMPLVASAAPSAGSASAITSPEPSAGDSGSGGTAEAGGI--------------------EWQRAKAILDDMVAADHLPAPPAAAFQAVLGACDAAGRGGEALEVASAMVEAGHSPSRRLVARLMASHADVLDREMREMEAAAAAPAEDWG 5806
MRSDPSRYPAPNTVC+NAALMALMR GRWREARGLL+EVA+ A G + LDFLSYN+VIRACAAAGEA+ EALKTR+EMRAA I ADAYTYEAL+ ACG+AG+WEAAEAV+REM+AGC+ XXXXXXX + W+Q LRH RQRRRQE+L+NGVPPSPR+ HGLMEAY++AGEWERA +CLDDM G L G+ G+ERVG GVKPDSTSVGWAIQACA AGQW+RALA SGA+S+G XXXXXXXXXXXXX EMA+LE+ Q EG + S A G V + D PRRS +S+RL +EACRR GDTRG +S F +M EEGFEPD+ ACAEGGGR ERAA+FLEE++EA L P+ VSYSA L ACESC +Q+GAAKTA+D+IQT+ AS++ AG SG P SPP RD+LAA+ ACA XXXXXXXXXXXXX LLPEHY AAM ACGR GN+ GVL LLSELR GA G A+ G A L XXXXXXXXXXXXX G++P+L S A YAAAA ALAD+GEWEWCLVLLEELEQ A+ D XXXXXXX XXXXX ETVL+VELDE+ + P + T YTA VRACG+G AGV+AVVG+L+RM WAGV PG+ YAAAISAF+ACGG E G E +G +S E AA AL+++E R G WASPFLY R F EGRRAAG+ATD+A +VA XXXXXXX TAP ARVNPGVEAVYM+ LT+CAAAGDG+LARDVLRWMK+EGFQ ++EAY+LAIEACC P V +DS + P + PP PLRP P + G S E G RR LFS+ E A XXXXXXX DNG A + V G VGD V+E R R ++ AAA QPP E+E +AE+ WV IPGGR +PPEFDEDG E VA MGGA + A G G VA V A+T +R +GDGG SP A SRAGAV+VLSP+ A + G SSG+ P V A A +W+RA+AILDDM AADHLP PP AF+AVLGACD+AGR GEALE+A MV AG SPS L+ RLMASHAD LDRE REME AAA PAE+WG
Sbjct: 1 MRSDPSRYPAPNTVCHNAALMALMRDGRWREARGLLSEVASAPPAAGG----------------SVELDFLSYNTVIRACAAAGEAEDVRDNDEAFFGGKALEALKTREEMRAADIPADAYTYEALSTACGLAGDWEAAEAVVREMVAGCSSXXX----------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDPWSQTLRH--RQRRRQERLENGVPPSPRVIHGLMEAYSRAGEWERAQQCLDDMRQAGSGWLPGDD----GRERVGAGTGVKPDSTSVGWAIQACAAAGQWDRALATFSGAKSDGIEPGQLCFXXXXXXXXXXXXXARATSLLAEMATLESE---QRLAREGEEENVSLSLG--------------ANNGVRTVPQLS------------------------EDDAAPRRSTDSYRLGMEACRRGGDTRGVMSTFVIMEEEGFEPDV--------ACAEGGGRFERAAAFLEEMKEAGLCPDNVSYSAALLACESCHDQEGAAKTAFDLIQTISASASESPDAGSNADANGGGESKP---------AGESTGSGGPVAPLSPPSSRDYLAALHACAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPPPCLLPEHYCAAMTACGRGGNAQGVLELLSELREA-----GAGGVAASSG---APLDGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA---------GMLPSL-SPAIYAAAANALADVGEWEWCLVLLEELEQLDADQDDNATGAXXXXXXXXXXXXXXX--XXXXXXXXXNINEEREVPEDGRGDAAAPETVLRVELDESGALAAPASATXXXXXXXXXXXXXXXXXXXXXYTAAVRACGKGGAGVQAVVGLLERMRWAGVDPGEDAYAAAISAFRACGGARE---------GEEASGRGVLSAEEAARALVEHETGRDGAADWASPFLY----------------RLFFVEGRRAAGVATDDAAEVAXXXXXXXXXXXDSGTAPKRPARVNPGVEAVYMSCLTMCAAAGDGSLARDVLRWMKLEGFQASEEAYMLAIEACCNPTVPQDSLAAPQQQSPFTTPPATSRQRLPLRP-------PAVANGAMSPEDLAGVRRKLFSEGEAPESEQHSAAXXXXXXXXXXXXXXRDDGDXGDNGVAAVLRLAT------ADTSVPG-----------VGDPASSVDEDVERGRVAEKVPAAAXXXXXXXXXXSLNPQRPQPPLGEEEERKAEERPGLEWVVIPGGRASPPEFDEDGNEKNVAPPGT-MGGAAWTTGGATAGXXXXGAVGFGGGD--------------VAPFSREGEVTTAAT-SRRDGDGGT-TSPASARGDVSRAGAVNVLSPLAAXXXXXXXXXXXXRGGRSSGQGRTPRVDPDAVVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDWERARAILDDMTAADHLPPPPEEAFRAVLGACDSAGRVGEALEIAQVMVGAGFSPSIALMTRLMASHADELDRERREMEEAAAEPAEEWG 1433
BLAST of mRNA_C-linearis_contig73.14966.1 vs. uniprot
Match: D7FX74_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX74_ECTSI) HSP 1 Score: 467 bits (1202), Expect = 3.200e-136 Identity = 564/1609 (35.05%), Postives = 647/1609 (40.21%), Query Frame = 2
Query: 1175 RMRSDPSRYPAPNTVCYNAALMALMRRGRWREARGLLTEVAATAKAWGSDDGEXXXXXXXXXXQEAEVLDFLSYNSVIRACAAAGEAKEALKTRDEMRAAGIAADAYTYEALAAACGMAGEWEAAEAVLREMMAGCAECAAGAGAGARAVTPPTATPAAPAAAGDTKGGDNAAAGGGSLVAETAAVEAEAVEAAXXXXXXXSNTYVGDAATAWNGDSAAAPPAPSPTAGHSYSSPSSASTATVGESWNQKLRHELRQRRRQEQLKNGVPPSPRMFHGLMEAYAQAGEWERALECLDDMLHGLKGALEGEQTAGAGQERVGVRAGVKPDSTSVGWAIQACATAGQWERALALLSGARSEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEMASLEARPVGQGAEAEGGNRSGFSSXXXXXXXXXXXXXQRTAGTGPAGVTKRGGDGETFAPWGGTVGPAAGGAFPPPSDSPVPRRSAESFRLVVEACRRAGDTRGALSAFAVMREEGFEPDLACFNEALRACAEGGGRLERAASFLEEVREAALEPNGVSYSAVLKACESCPNQKGAAKTAYDVIQTMIASSNAXXXXXXXXXXXXXXXXXXXXXXXXXXRAGGRGKSGLPTPSPPDGRDFLAAVRACAGGRSLPGSSSLALRLLTDLKVSAVASXXXXXXXXXXXXXVGIVRLLPEHYHAAMAACGRDGNSGGVLALLSELRRGGPEGGGAAGEEAAVGLRTAALXXXXXXXXXXXXXXXXSGSESMKEEEEEEARRTVEATRVATASGLVPALSSSATYAAAAAALADMGEWEWCLVLLEELEQHGAEHDXXXXXXXXXXXXXAEAGLRLSPPETAPXXXXXXXXXXXXXXXXXXXXXEEAETVLQVELDETSTPVA--TTYPNGDGEATEASAETLA-AYTATVRACGEGRAGVKAVVGVLDRMGWAGVAPGQGTYAAAISAFQACGGVWEGIQEGEGEGGREREAKGGVSVEGAAWALIDYEKDRLGTG-WASPFLYSAAIKACAEAGDIANGRQLFAEGRRAAGIATDNARDVAAAAVXXXXXXXXXXTAPAASARVNPGVEAVYMATLTLCAAAGDGNLARDVLRWMKMEGFQTTQEAYVLAIEACCAPAVREDS-SYPAAPAAMPLPPPLRPSSSIPPAPRPSTGGTSAEGTVGFRRTLFSQEERGRDRAVGGASQEPAXXXXXXXATLPRNPLPDNGGDASNAQGDGGSGKGVEVEVVGGARVGARRGFSVGDADVVVEEGRSRTSDVKQAAAGRLIIQPPPPS---------------EKETEAEQFGWVAIPGGRETPPEFDEDGEEV-ADAAVAMGGARPMDDVSKRYEGAGAATGDSGXXXXXXXXXXXXXXVLVAETPGTAGVVAASTGARLEGDGGMPVSPPVA----SRAGAVSVLSPVPATTAARQA----GVSSGERGMPLVASAAPSAGSASAITSPEPSAGDSGSGGTAEAGGI------------------------------------EWQRAKAILDDMVAADHLPAPPAAAFQAVLGACDAAGRGGEALEVASAMVEAGHSPSRRLVARLMASHADVLDREMREMEAAAAAPAEDWG 5806
RMRSDPSRYPAPNTVC+NAALMALMR GRWREARGLL+EVA+ A G LDFLSYN+VIRACAAAGEA+EALKTR+EMRAAGI AAEAV+REM+ AY++AGEWERA +CLDDM G E + GQERVG GVKPDSTSVGWAIQACA AGQW+RALA SGA+S+G XXXXXXXXXXXXXXXXXXXXXX EMA+LE+ R A R G+ E +P G P D PRRS +S+RL +EACRR GD RG +S F +M EEGFE D+ +E EEE A R+ EAT+ A A+ ++P+L S A YAAAA ALAD+GEWEWCLVLLEELEQ AE D A S XXXXXXXXXXXXXXXXXXX E ETVL+VELDE A T +G A EA+ AYTA VRACGEG AGV+ VVGVL+RM W GV PG+ YAAA+SAF G +EGE GR G + E AA AL+++E R G WASPFLY R LF EGRRAAG+ATD+A +VA XXXXXXX TAP ARVN GVEAVYM+ LT+CAAAGDG+LARDVLRWMK+EGFQ ++EAY+LAIEACC PAV +DS + P P++ PP P P ++G TS E G RR LFS+ E + Q A XXXXXX G D A V G V VGD V+E R ++ A K + WV IPGGR +PPEFDEDG E MGGA +K G A G G G A AAS R +GDGG SP A SRAGAV+VLSP+ A G SSG+R P V +P A +W+RA+AILDDM AADHLP PP AF+AVLGACD+AGR GEALE+A MV AG SPS L+ RL+ASHAD LDRE REME AAA PAE+WG
Sbjct: 100 RMRSDPSRYPAPNTVCHNAALMALMRDGRWREARGLLSEVASATPATGG----------------GVELDFLSYNTVIRACAAAGEAEEALKTREEMRAAGIXXXXXXXXXXXXXXXXXXXXXAAEAVVREMV---------------------------------------------------------------------------------------------------------------------------------------------------AYSRAGEWERAQQCLDDMRQGSGWLPEDD-----GQERVGAGTGVKPDSTSVGWAIQACAAAGQWDRALATFSGAKSDGIXXXXXXXXXXXXXXXXXXXXXXATSLLAEMATLESE-------------------------------HRLA---------RLGEEEKASPSLGANNQGVRTVPQPSEDDAAPRRSTDSYRLGMEACRRGGDARGVMSTFVIMEEEGFEADV------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EEAEEEAASRSAEATQTAAAAEMLPSL-SPAIYAAAANALADVGEWEWCLVLLEELEQLDAEQDDG-----------ATGATATSTXXXXXXXXXXXXXXXXXXXXXXXXEQEAPETVLRVELDENGALAAPATATSQKEGSAPEAAXXXXXXAYTAAVRACGEGGAGVQTVVGVLERMRWVGVDPGEDAYAAAVSAFXXX--XXXGAREGEEGSGR-----GVLFAEEAARALVEHETGRDGAADWASPFLY----------------RMLFVEGRRAAGVATDDAAEVAXXXXXXXXXXXDSGTAPKRPARVNAGVEAVYMSCLTMCAAAGDGSLARDVLRWMKLEGFQASEEAYMLAIEACCNPAVPQDSPAAPQQPSSFTTPPATSRQRLPLPPPTFASGATSPEDLAGVRRKLFSEGE------APESEQHSAAXXXXXXXXXXXXXXXXXGDDGVAA---------VLRPATAGTSV-----PGVGDPASSVDEDVERGRVAEEMPAXXXXXXXXXXXXXXXXXXXXXXXXXXRKAERRPELEWVVIPGGRVSPPEFDEDGNEKNVTPPGTMGGAAWATGGAKAGPGGSGAVGFGGGDGAPFPRE------------GEATTAAAS---RRDGDGGT-TSPASARADVSRAGAVNVLSPLAAAXXXXXXXXXXGRSSGQRLTPRV----------------DPDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADWERARAILDDMTAADHLPPPPEEAFRAVLGACDSAGRVGEALEIAQVMVGAGFSPSISLMTRLIASHADELDRERREMEEAAAEPAEEWG 1167
BLAST of mRNA_C-linearis_contig73.14966.1 vs. uniprot
Match: A0A6H5K4Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4Z1_9PHAE) HSP 1 Score: 183 bits (465), Expect = 9.860e-48 Identity = 97/145 (66.90%), Postives = 109/145 (75.17%), Query Frame = 2
Query: 464 DRRQKKFTIAMKELGYSSRWKAVPVLIAEAGRVGLPLNVICLNAAMSVLARSGRWYEALDLLAKMRRGEALRSVGL----AVSDQETNPRGNPLGERDGETKRVLFLPEPDTITFNAAISACGRGKKWKPAVDLLDTMRREGLTP 886
D RQ+KFT MK+LGY WKAV LIAEAGRVGLPLNVICLNAAMSVLARSGRWYEALDLL+ MRRG L V + +DQ T R + + + +L LPEPDTITFN AI+ACGRGKKWKPAV+LLD+MRREGL P
Sbjct: 69 DLRQRKFTKGMKQLGYRGGWKAVRGLIAEAGRVGLPLNVICLNAAMSVLARSGRWYEALDLLSMMRRGALLVDVDGGGDGSGADQGTGFREPRVEGEEASSSTMLVLPEPDTITFNTAITACGRGKKWKPAVELLDSMRREGLVP 213
BLAST of mRNA_C-linearis_contig73.14966.1 vs. uniprot
Match: D7FX75_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX75_ECTSI) HSP 1 Score: 55.1 bits (131), Expect = 3.910e-5 Identity = 23/28 (82.14%), Postives = 26/28 (92.86%), Query Frame = 2
Query: 803 AISACGRGKKWKPAVDLLDTMRREGLTP 886
A+ ACGRGKKWKPAV+LLD+MRREGL P
Sbjct: 82 AVRACGRGKKWKPAVELLDSMRREGLVP 109 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig73.14966.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig73.14966.1 >prot_C-linearis_contig73.14966.1 ID=prot_C-linearis_contig73.14966.1|Name=mRNA_C-linearis_contig73.14966.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=1918bp MPASHLTVLVAAAAAGNTVLAVAPRRGSSTDGLCFISPASSCAPTKTARRback to top mRNA from alignment at C-linearis_contig73:626094..638200+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig73.14966.1 ID=mRNA_C-linearis_contig73.14966.1|Name=mRNA_C-linearis_contig73.14966.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=12107bp|location=Sequence derived from alignment at C-linearis_contig73:626094..638200+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig73:626094..638200+ >mRNA_C-linearis_contig73.14966.1 ID=mRNA_C-linearis_contig73.14966.1|Name=mRNA_C-linearis_contig73.14966.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=11508bp|location=Sequence derived from alignment at C-linearis_contig73:626094..638200+ (Chordaria linearis ClinC8C monoicous)back to top |