mRNA_C-linearis_contig73.14965.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig73.14965.1
Unique NamemRNA_C-linearis_contig73.14965.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig73.14965.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig73contigC-linearis_contig73:617178..617749 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size572
Cds size354
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig73.14965.1prot_C-linearis_contig73.14965.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig73 617240..617593 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930397.3795986-UTR-C-linearis_contig73:617177..6172391622930397.3795986-UTR-C-linearis_contig73:617177..617239Chordaria linearis ClinC8C monoicousUTRC-linearis_contig73 617178..617239 +
1690881048.938052-UTR-C-linearis_contig73:617177..6172391690881048.938052-UTR-C-linearis_contig73:617177..617239Chordaria linearis ClinC8C monoicousUTRC-linearis_contig73 617178..617239 +
1622930397.4149895-UTR-C-linearis_contig73:617593..6177491622930397.4149895-UTR-C-linearis_contig73:617593..617749Chordaria linearis ClinC8C monoicousUTRC-linearis_contig73 617594..617749 +
1690881048.9597402-UTR-C-linearis_contig73:617593..6177491690881048.9597402-UTR-C-linearis_contig73:617593..617749Chordaria linearis ClinC8C monoicousUTRC-linearis_contig73 617594..617749 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930397.397412-CDS-C-linearis_contig73:617239..6175931622930397.397412-CDS-C-linearis_contig73:617239..617593Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 617240..617593 +
1690881048.9487078-CDS-C-linearis_contig73:617239..6175931690881048.9487078-CDS-C-linearis_contig73:617239..617593Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 617240..617593 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig73.14965.1

>prot_C-linearis_contig73.14965.1 ID=prot_C-linearis_contig73.14965.1|Name=mRNA_C-linearis_contig73.14965.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=118bp
MSQHQSSTQASAFITRGRECKRLDCVSLAKCHHWSTPQAKLSSLYETPIQ
KWKRHYHASLDFRIFQAQAIIARKLTRNACSSTDELLSSWPSKRLVLHGI
TIVVRPHHVRQDRLLLH*
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mRNA from alignment at C-linearis_contig73:617178..617749+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig73.14965.1 ID=mRNA_C-linearis_contig73.14965.1|Name=mRNA_C-linearis_contig73.14965.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=572bp|location=Sequence derived from alignment at C-linearis_contig73:617178..617749+ (Chordaria linearis ClinC8C monoicous)
CGCCCCCGCTACACAAATGGACACATCTGTCCCTCTTTGCAACATAGACA
CGCCTGTACTGCATGTCTCAGCATCAATCATCAACGCAGGCATCAGCTTT
CATCACCCGCGGACGAGAATGTAAACGCCTTGACTGCGTTTCCCTCGCAA
AATGTCATCACTGGTCGACACCGCAAGCGAAATTATCATCACTCTACGAA
ACACCAATTCAGAAATGGAAACGCCATTACCACGCATCCCTTGATTTTCG
GATTTTTCAAGCACAAGCCATTATCGCTCGTAAACTAACCAGAAACGCCT
GCTCCTCCACCGATGAGCTCTTGTCATCCTGGCCTTCAAAACGCCTGGTT
CTCCACGGAATCACAATCGTTGTCAGACCCCATCACGTACGCCAAGATCG
CCTGCTCCTCCACTGATGGGCACTTGTCCTCCTTGTGGCCCTCGACAGGA
AGTCCTCCTCTTGCTGTTATCACCGTACTTTGCAACAACACGCTCAGCAG
CACCCTCACCTTGGGGGCTATCAAGCCCTCCAGACTCCTGTGACCCCTCT
GGGTCAACAGCAGGTGTGTGGC
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Coding sequence (CDS) from alignment at C-linearis_contig73:617178..617749+

>mRNA_C-linearis_contig73.14965.1 ID=mRNA_C-linearis_contig73.14965.1|Name=mRNA_C-linearis_contig73.14965.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at C-linearis_contig73:617178..617749+ (Chordaria linearis ClinC8C monoicous)
ATGTCTCAGCATCAATCATCAACGCAGGCATCAGCTTTCATCACCCGCGG
ACGAGAATGTAAACGCCTTGACTGCGTTTCCCTCGCAAAATGTCATCACT
GGTCGACACCGCAAGCGAAATTATCATCACTCTACGAAACACCAATTCAG
AAATGGAAACGCCATTACCACGCATCCCTTGATTTTCGGATTTTTCAAGC
ACAAGCCATTATCGCTCGTAAACTAACCAGAAACGCCTGCTCCTCCACCG
ATGAGCTCTTGTCATCCTGGCCTTCAAAACGCCTGGTTCTCCACGGAATC
ACAATCGTTGTCAGACCCCATCACGTACGCCAAGATCGCCTGCTCCTCCA
CTGAATGTCTCAGCATCAATCATCAACGCAGGCATCAGCTTTCATCACCC
GCGGACGAGAATGTAAACGCCTTGACTGCGTTTCCCTCGCAAAATGTCAT
CACTGGTCGACACCGCAAGCGAAATTATCATCACTCTACGAAACACCAAT
TCAGAAATGGAAACGCCATTACCACGCATCCCTTGATTTTCGGATTTTTC
AAGCACAAGCCATTATCGCTCGTAAACTAACCAGAAACGCCTGCTCCTCC
ACCGATGAGCTCTTGTCATCCTGGCCTTCAAAACGCCTGGTTCTCCACGG
AATCACAATCGTTGTCAGACCCCATCACGTACGCCAAGATCGCCTGCTCC
TCCACTGA
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