mRNA_C-linearis_contig73.14959.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig73.14959.1 vs. uniprot
Match: D7FPH8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPH8_ECTSI) HSP 1 Score: 376 bits (965), Expect = 1.570e-114 Identity = 194/437 (44.39%), Postives = 268/437 (61.33%), Query Frame = 3
Query: 933 SGRGPGRPAR---AVGQPD-IDPISGDHTDKLFNTAAGNPIDVSITVTSMDSGNIPPHVMEKVVLYLKQWSVRGVCSQERGQEKGNLHVQGVATFGVMPTFDSPAKLHAALRKHMREKTGLVGKDRIKLVVKQLEGTQTFDGMVGYCCKDSGKSHYKTFRKNVTKAEANIALTAYRVLQRQDVKDNRVELGKKNFWPIVTRFKQENMKALPVSPLLATQWLINDGEYKPSHTWSIPSSASGMVVEAADAQWVCELTPRLFTRKHTYVLFFSGGYNGRTTTSHRFWD*MDREFEELSVDEAKVCSHNRLQVQGAMDLTRENVAREVAAFRSSEPDGAVRYPLDADSDEEAPVVQNAARTQYVPDPLARIMRDRLSQLGRTSADTSAASADLPLICHPKCIETGCTRGGSFGMVTCAACDGYLHRSCGTLIDEDDDDWT 2231
S R PGRP + A +P I P +GD D + ++ G P D S+T+ + NI + + ++ + +VRG+ S ERG GNLH+QG+ T + F K AALR+ +R G D++K+ +K+L QTF GMVGYC KD G+SH+KT K V++ E NIAL YR LQR V + R ++GKKNFW ++ RFKQE+++ + VSP+ W INDGE PSHTW P+SA M ADA + ++P LFTRK Y+LFFSGG GR ++S WD DREF E++VD+AKVCSH+R +++GAMD+ RE + R++A + P G V +P+DADSD + + R + ++GRT+ADTS+AS +LPLI PKC+E GCT+ G+ MV C CDG LHRSCG E+D W+
Sbjct: 280 SARRPGRPRKSPPASREPSWICPTTGDIADDIIDSGVGAPHDFSVTIGNRSGANIKESLFNEGCAWMTKRAVRGITSMERGDINGNLHLQGIWTLALKKDFGDSKKEEAALRRKLRVDCGWTAADKVKITIKRLIKQQTFSGMVGYCSKDEGRSHFKTVTKGVSRTEVNIALAEYRTLQRFVVSELRTDIGKKNFWGVLRRFKQEHLRGISVSPVQLISWYINDGEGMPSHTWICPTSAFAMEAARADAYFTALMSPSLFTRKDAYLLFFSGGQGGRVSSSFAKWDYQDREFSEMTVDQAKVCSHDRQELEGAMDIARERIMRDIAESHRA-PAGVVNFPVDADSDA-------GSDSDVAXXXXXXXARRQWDRIGRTAADTSSASEELPLIICPKCVEPGCTKAGNIAMVACNLCDGDLHRSCGVRGGEEDASWS 708
BLAST of mRNA_C-linearis_contig73.14959.1 vs. uniprot
Match: D7G8U7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8U7_ECTSI) HSP 1 Score: 330 bits (846), Expect = 1.350e-101 Identity = 175/386 (45.34%), Postives = 235/386 (60.88%), Query Frame = 3
Query: 1134 VRGVCSQERGQEKGNLHVQGVATFGVMPTFDSPAKLHAALRKHMREKTGLVGKDRIKLVVKQLEGTQTFDGMVGYCCKDSGKSHYKTFRKNVTKAEANIALTAYRVLQRQDVKDNRVELGKKNFWPIVTRFKQENMKALPVSPLLATQWLINDGEYKPSHTWSIPSSASGMVVEAADAQWVCELTPRLFTRKHTYVLFFSGGYNGRTTTSHRFWD*MDREFEELSVDEAKVCSHNRLQVQGAMDLTRENVAREVAAFRSSEPDGAVRYPLDADSDEEAPVVQNAARTQYVPDPLARIMRDRLSQLGRTSADTSAASADLPLICHPKCIETGCTRGGSFGMVTCAACDGYLHRSCGTL----IDEDDDDWTDRQCNKCSSAGKGKGR 2279
VRG+ S ERG GNLH+QG+ T G++ FD P K AA+RK +R+ ++K+V+K+L QTF GM+GYC KD G+ H+KT K V++ E N+AL YR LQR V ++RVELGKKNFW ++ RFKQE+++ + VSPL W+I D + PS +W PSSA M ADA + P LF RKH Y+LFF+GG R TSH WD DREF +++VD+AKVCSH+ L+++GAMD RE REVA R P G + DSD +A + + P P +R + + +GRTS D S A+ LPLI PKCIE GCT G+ GM++C C G LHR CG D++ D + ++C C+ +GK R
Sbjct: 2 VRGLVSLERGNVHGNLHLQGILTAGLVKYFDDPRKEEAAMRKSIRQACEWKSHVKVKIVIKRLMRQQTFSGMLGYCSKDQGRPHFKTSSKGVSQTEINVALAEYRKLQRVCVTEDRVELGKKNFWGLLRRFKQEHLRGIFVSPLQMVTWIIQDQQAVPSSSWICPSSAFPMDAARADAFGIALFCPSLFIRKHAYLLFFAGGQGDRIITSHEDWDTQDREFADMTVDQAKVCSHDHLELEGAMDAARERAVREVANARRYLP-GVANFGFGPDSDSDA---TSDVGARAAPPPRSRRV---WAGIGRTSNDFSEANEPLPLIVSPKCIEPGCTNAGNMGMISCGRCHGDLHRGCGVSGGGNHDDECDSFVGQRCTPCAYPRRGKKR 380
BLAST of mRNA_C-linearis_contig73.14959.1 vs. uniprot
Match: D8LBK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK2_ECTSI) HSP 1 Score: 236 bits (601), Expect = 5.130e-66 Identity = 118/263 (44.87%), Postives = 160/263 (60.84%), Query Frame = 3
Query: 981 IDPISGDHTDKLFNTAAGNPIDVSITVTSMDSGNIPPHVMEKVVLYLKQWSVRGVCSQERGQEKGNLHVQGVATFGVMPTFDSPAKLHAALRKHMREKTGLVGKDRIKLVVKQLEGTQTFDGMVGYCCKDSGKSHYKTFRKNVTKAEANIALTAYRVLQRQDVKDNRVELGKKNFWPIVTRFKQENMKALPVSPLLATQWLINDGEYKPSHTWSIPSSASGMVVEAADAQWVCELTPRLFTRKHTYVLFFSGGYNGRTTTSHR 1769
I P +GD D + ++ G P D S+T+ + NI + + ++ + +VRGV S ERG GNLH+QG+ T + F K AALR+ +R G D++K+ +K+L QTF GMVG C KD G+SH+KT K V++ E NIALT YR LQR V + R E+GKKNFW ++ RFKQE+++ + VSP+ W INDGE PSHTW P+SA M ADA + ++P LFTRK Y+LFFSGG GR + R
Sbjct: 125 ICPTTGDIADDIIDSGVGAPHDFSVTIGNRSGANIKESLFNEGCAWMTKRAVRGVTSMERGDMNGNLHLQGIWTLALKKDFGDSKKEEAALRRKLRVDCGWTAADKVKITIKRLIKQQTFSGMVGDCSKDEGRSHFKTVTKGVSRTEVNIALTEYRTLQRSVVSELRTEIGKKNFWGVLRRFKQEHLRGISVSPVQLISWYINDGEGMPSHTWICPTSAFAMEAARADAYFTALMSPSLFTRKDAYLLFFSGGQGGRVSGPSR 387
BLAST of mRNA_C-linearis_contig73.14959.1 vs. uniprot
Match: D7G6N0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6N0_ECTSI) HSP 1 Score: 134 bits (338), Expect = 2.960e-30 Identity = 96/313 (30.67%), Postives = 138/313 (44.09%), Query Frame = 3
Query: 933 SGRGPGRPAR---AVGQPD-IDPISGDHTDKLFNTAAGNPIDVSITVTSMDSGNIPPHVMEKVVLYLKQWSVRGVCSQERGQEKGNLHVQGVATFGVMPTFDSPAKLHAALRKHMREKTGLVGKDRIKLVVKQLEGTQTFDGMVGYCCKDSGKSHYKTFRKNVTKAEANIALTAYRVLQRQDVKDNRVELGKKNFWPIVTR------------FKQENMKALPVSPLLATQWLINDGEYKPSHTWSIPSSASGMVVEAADAQWVCELTPRLFTRKHTYVLFFSGGYNGRTTTSHRFWD*MDREFEELSVDEAK 1823
S R PGRP + A +P I P +GD + ++ G P D S+T+ + N+ + + ++ + +VRGV S ER GNLH+QG+ T + F K AA R+ +R G D K H++ R+ T+ R R G ++ P + + + + VSP+ W INDGE PSHTW P+SA M ADA + ++P LFTRK Y+LFFSGG GR ++S WD DREF E++VD+AK
Sbjct: 35 SARRPGRPRKSPPASREPSWICPTTGDIAADIIDSGVGAPHDFSVTIGNRSGANMKESLFNEGCAWMTKRAVRGVTSMERRDMNGNLHLQGIWTLSLKKDFGDSKKEEAASRRKLRVDCGWTAAD---------------------------KDHHQAPRQATDIQRTKDVHTSRR--------SPRACRGPRSISPAPSTAPSSDPSSPSFDLSRSTPRGISVSPVQLISWDINDGEGMPSHTWICPTSAFAMEAARADAYFTALISPSLFTRKDAYLLFFSGGQGGRVSSSFEKWDYQDREFSEMTVDQAK 312
BLAST of mRNA_C-linearis_contig73.14959.1 vs. uniprot
Match: D8LFC4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFC4_ECTSI) HSP 1 Score: 122 bits (305), Expect = 8.910e-27 Identity = 68/166 (40.96%), Postives = 99/166 (59.64%), Query Frame = 3
Query: 1803 LSVDEAKVCSHNRLQVQGAMDLTRENVAREVAAFRSSEPDGAVRYPL--DADSDEEAPVVQNAARTQYVPDPLARIMRDRLSQLGRTSADTSAASADLPLICHPKCIETGCTRGGSFGMVTCAACDGYLHRSCGTL-----IDEDDDDWTDRQCNKCSSAGKGKGR 2279
+S AK CSH+RL ++G MD RE + R++AA R + P G V +P+ D+D++++A ++ T+ P P A R LGR ADTSAASA+LP+I P CIE C G+ MV+C C+G +HR CG L D + +D+ +C+ C++A KGK R
Sbjct: 139 ISPSRAKACSHSRLTLEGEMDAAREKIVRDLAAARGA-PSGVVNFPVGPDSDNEDDAGHRNSSDNTRSTPRPTAL----RHGDLGRAEADTSAASANLPVIYCPACIEPECNMSGNMSMVSCNICNGNIHRFCGVLGGTRNDDGETNDFEGTRCSPCAAANKGKKR 299
BLAST of mRNA_C-linearis_contig73.14959.1 vs. uniprot
Match: A0A6H5JMG5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMG5_9PHAE) HSP 1 Score: 119 bits (297), Expect = 8.710e-26 Identity = 94/289 (32.53%), Postives = 124/289 (42.91%), Query Frame = 3
Query: 1155 ERGQEKGNLHVQGVATFGVMPTFDSPAKLHAALRKHMREKTGLVGKDRIKLVVKQLEGTQTFDGMVGYCCKDSGKSHYKTFRKNVTKAEANIALTAYRVLQRQDVKDNRVELGKKNFWPIVTRFKQENMKALPVSPLLATQWLINDGEYKPSHTWSIPSSASGMVVEAADAQWVCELTPRLFTRKHTYVLFFSGGYNGRTTTSHRFWD*MDREFEELSVDEAKVCSHNRLQVQGAMDLTRENVAREVAAFRSSEPDGAVRYPLDADSDEEAPVVQNAARTQYVPDPLAR 2021
+ G+ G+L +Q V T G+ + AK AAL K + G DR+K+ +K+L+ QTF+ G+ H++T KNV++ + N L YRVLQR + VS L W I G PS T PS M ADA + +TP LF RKH Y LFFSGG EFE ++ D+AK CSH R+ ++G +D R A E A R S GAV SD E + A PD AR
Sbjct: 63 DMGELHGHLQLQCVVTLGIRKQYTDEAKELAALSKKISVDNGWTTADRVKITIKRLQRGQTFNRR--------GQVHFRTHAKNVSRPDINETLAEYRVLQRA--------------------------VGVEVSILQLMTWYIQPGLGMPSPTCVTPSGGWPMCPMRADAYMIALMTPELFPRKHCYSLFFSGGAG---------------EFEGMTHDQAKECSHKRMLLEGRLDQARAKAALEKVAARLST--GAVPGLCQDSSDSEG---EQAVEQSRRPDQPAR 297 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig73.14959.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig73.14959.1 >prot_C-linearis_contig73.14959.1 ID=prot_C-linearis_contig73.14959.1|Name=mRNA_C-linearis_contig73.14959.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=392bp MVPVLRRRGYGRRAGLATRRRLLPGVNPSHAVRSKRRQFLDDDEAAAEAAback to top mRNA from alignment at C-linearis_contig73:503900..507432+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig73.14959.1 ID=mRNA_C-linearis_contig73.14959.1|Name=mRNA_C-linearis_contig73.14959.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3533bp|location=Sequence derived from alignment at C-linearis_contig73:503900..507432+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig73:503900..507432+ >mRNA_C-linearis_contig73.14959.1 ID=mRNA_C-linearis_contig73.14959.1|Name=mRNA_C-linearis_contig73.14959.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2352bp|location=Sequence derived from alignment at C-linearis_contig73:503900..507432+ (Chordaria linearis ClinC8C monoicous)back to top |