mRNA_C-linearis_contig73.14953.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig73.14953.1
Unique NamemRNA_C-linearis_contig73.14953.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig73.14953.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig73contigC-linearis_contig73:325557..326146 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size592
Cds size423
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930397.108239-UTR-C-linearis_contig73:325556..3257231622930397.108239-UTR-C-linearis_contig73:325556..325723Chordaria linearis ClinC8C monoicousUTRC-linearis_contig73 325557..325723 +
1690881048.8451512-UTR-C-linearis_contig73:325556..3257231690881048.8451512-UTR-C-linearis_contig73:325556..325723Chordaria linearis ClinC8C monoicousUTRC-linearis_contig73 325557..325723 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930397.124039-CDS-C-linearis_contig73:325723..3261461622930397.124039-CDS-C-linearis_contig73:325723..326146Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 325724..326146 +
1690881048.8572118-CDS-C-linearis_contig73:325723..3261461690881048.8572118-CDS-C-linearis_contig73:325723..326146Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 325724..326146 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig73.14953.1prot_C-linearis_contig73.14953.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig73 325724..326146 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig73.14953.1

>prot_C-linearis_contig73.14953.1 ID=prot_C-linearis_contig73.14953.1|Name=mRNA_C-linearis_contig73.14953.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=141bp
MYVRCKLQRALLCMLMLHDHPQAPPLSPALASIQQRPSACSGAKQRARTA
LHGIQITGGERATQQPAAHVHTRTHTYTHVHTHSAYASSRPQTALTPQEE
PNRCRMRSTSQYPTARRTNKKSRERKPPSHPSQDGPQQQQQ
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mRNA from alignment at C-linearis_contig73:325557..326146+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig73.14953.1 ID=mRNA_C-linearis_contig73.14953.1|Name=mRNA_C-linearis_contig73.14953.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=590bp|location=Sequence derived from alignment at C-linearis_contig73:325557..326146+ (Chordaria linearis ClinC8C monoicous)
GCTTGTTTCGTACGATTCTTCTTTGATGCTACTTTATATACTTAGCCAGG
CTAGGCAGGGGACACTCGCAAACGGCGGTGCACAGCACCCCAAACCTCGG
CGCTGGTAGTAGCGATGCAAAGAAAAGTAGGCACGCAGATAGATCCTCCG
CTTCTTGTCGATCCCGTATGTATGTACGTTGCAAACTACAGCGTGCCTTG
TTGTGCATGCTAATGCTACACGACCACCCGCAAGCACCTCCACTTTCGCC
AGCCTTAGCCTCGATCCAACAACGACCCTCAGCGTGCTCAGGCGCAAAAC
AACGAGCACGGACGGCGTTGCACGGCATACAAATCACAGGAGGAGAGCGG
GCAACACAACAACCTGCAGCACACGTACACACACGTACACACACGTACAC
ACACGTACACACACACTCGGCATACGCGTCGAGTAGGCCGCAAACGGCAC
TCACACCGCAAGAAGAACCGAACAGGTGTCGAATGCGCTCAACATCCCAG
TACCCAACCGCAAGAAGAACAAACAAGAAGAGCCGGGAAAGGAAACCACC
CTCCCACCCATCCCAGGACGGGCCGCAGCAACAACAGCAA
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Coding sequence (CDS) from alignment at C-linearis_contig73:325557..326146+

>mRNA_C-linearis_contig73.14953.1 ID=mRNA_C-linearis_contig73.14953.1|Name=mRNA_C-linearis_contig73.14953.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=846bp|location=Sequence derived from alignment at C-linearis_contig73:325557..326146+ (Chordaria linearis ClinC8C monoicous)
ATGTATGTACGTTGCAAACTACAGCGTGCCTTGTTGTGCATGCTAATGCT
ACACGACCACCCGCAAGCACCTCCACTTTCGCCAGCCTTAGCCTCGATCC
AACAACGACCCTCAGCGTGCTCAGGCGCAAAACAACGAGCACGGACGGCG
TTGCACGGCATACAAATCACAGGAGGAGAGCGGGCAACACAACAACCTGC
AGCACACGTACACACACGTACACACACGTACACACACGTACACACACACT
CGGCATACGCGTCGAGTAGGCCGCAAACGGCACTCACACCGCAAGAAGAA
CCGAACAGGTGTCGAATGCGCTCAACATCCCAGTACCCAACCGCAAGAAG
AACAAACAAGAAGAGCCGGGAAAGGAAACCACCCTCCCACCCATCCCAGG
ACGGGCCGCAGCAACAACAGCAAATGTATGTACGTTGCAAACTACAGCGT
GCCTTGTTGTGCATGCTAATGCTACACGACCACCCGCAAGCACCTCCACT
TTCGCCAGCCTTAGCCTCGATCCAACAACGACCCTCAGCGTGCTCAGGCG
CAAAACAACGAGCACGGACGGCGTTGCACGGCATACAAATCACAGGAGGA
GAGCGGGCAACACAACAACCTGCAGCACACGTACACACACGTACACACAC
GTACACACACGTACACACACACTCGGCATACGCGTCGAGTAGGCCGCAAA
CGGCACTCACACCGCAAGAAGAACCGAACAGGTGTCGAATGCGCTCAACA
TCCCAGTACCCAACCGCAAGAAGAACAAACAAGAAGAGCCGGGAAAGGAA
ACCACCCTCCCACCCATCCCAGGACGGGCCGCAGCAACAACAGCAA
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