mRNA_C-linearis_contig73.14949.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig73.14949.1
Unique NamemRNA_C-linearis_contig73.14949.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig73.14949.1 vs. uniprot
Match: A0A6H5JGF9_9PHAE (Complex1_LYR_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGF9_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 9.600e-44
Identity = 74/88 (84.09%), Postives = 80/88 (90.91%), Query Frame = 1 
Query:    1 MTARLSGVQREVNQLYRLLLRAAKLKDGGGWDGTTTALVRAEFREQAESVGRADFRTIEHLLRVGNKKLKLLKMPGVKAAAGVTVERR 264
            M+ARLSGVQREVN+LYRLLLRAA++KDGG W G+TT LVRAEFR QAESV R DFRTIEHLLR GNKKLKLLKMPGVKAAAG+TV RR
Sbjct:    1 MSARLSGVQREVNKLYRLLLRAARVKDGGEWAGSTTELVRAEFRAQAESVARTDFRTIEHLLRAGNKKLKLLKMPGVKAAAGITVVRR 88
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BLAST of mRNA_C-linearis_contig73.14949.1 vs. uniprot
Match: D7FX23_ECTSI (Heat shock protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX23_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 8.740e-40
Identity = 69/83 (83.13%), Postives = 74/83 (89.16%), Query Frame = 1 
Query:   16 SGVQREVNQLYRLLLRAAKLKDGGGWDGTTTALVRAEFREQAESVGRADFRTIEHLLRVGNKKLKLLKMPGVKAAAGVTVERR 264
            S  +REVNQLYRLLLRAA++KDGG W G+TT LVRAEFR QAESVGR DFRTIEHLLR GNKKLKLLKMPGVKAAAG+TV RR
Sbjct:   52 SPTKREVNQLYRLLLRAARVKDGGEWAGSTTELVRAEFRAQAESVGRTDFRTIEHLLRAGNKKLKLLKMPGVKAAAGITVARR 134
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BLAST of mRNA_C-linearis_contig73.14949.1 vs. uniprot
Match: A0A7S1ZYE5_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZYE5_TRICV)

HSP 1 Score: 65.1 bits (157), Expect = 1.240e-11
Identity = 32/74 (43.24%), Postives = 45/74 (60.81%), Query Frame = 1 
Query:   40 QLYRLLLRAAKLKDGGGWDGTTTALVRAEFREQAESVGRADFRTIEHLLRVGNKKLKLLKMPGVKAAAGVTVER 261
            + + +LL   K       D TTT+  R+EFR++A S+ R DFRTIEH++R G K++KLL+MPGV         R
Sbjct:   41 EYFLVLLSTDKCPSSPPGDATTTSYARSEFRKKAASIPRNDFRTIEHMIRWGQKQIKLLRMPGVSFVGSPNARR 114
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BLAST of mRNA_C-linearis_contig73.14949.1 vs. uniprot
Match: C5DJD6_LACTC (KLTH0F15576p n=2 Tax=Lachancea TaxID=300275 RepID=C5DJD6_LACTC)

HSP 1 Score: 62.8 bits (151), Expect = 4.060e-11
Identity = 38/78 (48.72%), Postives = 49/78 (62.82%), Query Frame = 1 
Query:    1 MTARLSGVQREVNQLYRLLLRAAKLKDGGGWDGTTTALVRAEFREQAESVGRADFRTIEHLLRVGNKKLKLLKMPGVK 234
            M  RLSG+QREV Q+YR  +RAA  K         T  +R EFR Q + + R DF TIEHLLRVG+++L++   P VK
Sbjct:    1 MAKRLSGLQREVLQMYRQCIRAAHDKPKANQPNFVTH-IRKEFR-QYQDLPRKDFSTIEHLLRVGHRRLEMYSQPEVK 76
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BLAST of mRNA_C-linearis_contig73.14949.1 vs. uniprot
Match: A0A6U0URI4_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0URI4_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.620e-10
Identity = 39/68 (57.35%), Postives = 47/68 (69.12%), Query Frame = 1 
Query:   16 SGVQREVNQLYRLLLRAAKLKDGGGWDGTTTALVRAEFREQAESVGRADFRTIEHLLRVGNKKLKLLK 219
            SGVQ EV  LYR LLR AK K   G D  T A+VR +FRE A SV R++ R IEHL+R G KK++LL+
Sbjct:   65 SGVQTEVLNLYRQLLRLAKAK---GPD--TYAMVRNKFREDARSVKRSEIRLIEHLVRQGKKKVRLLQ 127
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BLAST of mRNA_C-linearis_contig73.14949.1 vs. uniprot
Match: A0A5J5FAV1_9PEZI (Complex 1 protein-domain-containing protein n=1 Tax=Sphaerosporella brunnea TaxID=1250544 RepID=A0A5J5FAV1_9PEZI)

HSP 1 Score: 61.6 bits (148), Expect = 1.670e-10
Identity = 38/78 (48.72%), Postives = 44/78 (56.41%), Query Frame = 1 
Query:    1 MTARLSGVQREVNQLYRLLLRAAKLKDGGGWDGTTTALVRAEFREQAESVGRADFRTIEHLLRVGNKKLKLLKMPGVK 234
            M  RLSG+QREV  LYR  LR  K K             R EFR+    + + DF TIEHLLRVG KKL+L   PG+K
Sbjct:    1 MMPRLSGIQREVLSLYRSCLRMIKEKPAESQQNFRE-YARHEFRQNL-GLNKKDFATIEHLLRVGQKKLELYSQPGIK 76
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BLAST of mRNA_C-linearis_contig73.14949.1 vs. uniprot
Match: A0A4S2N7G0_9PEZI (Complex1_LYR_dom domain-containing protein n=1 Tax=Ascodesmis nigricans TaxID=341454 RepID=A0A4S2N7G0_9PEZI)

HSP 1 Score: 60.1 bits (144), Expect = 5.020e-10
Identity = 37/80 (46.25%), Postives = 48/80 (60.00%), Query Frame = 1 
Query:    4 TARLSGVQREVNQLYRLLLRAAKLKDGGGWDGTTTALVRAEFREQAESVGRADFRTIEHLLRVGNKKLKLLKMPGVKAAA 243
            T RLSG+QR+V  LYR  LRA + K           + R EF++   S+ + DF TIEHLLRVG +KL++   PGVK  A
Sbjct:    4 TKRLSGIQRDVLSLYRKCLRAIREKPVEA-QPNFRLVARREFQKNL-SISKKDFVTIEHLLRVGQRKLEMYSQPGVKNIA 81
[Close]
BLAST of mRNA_C-linearis_contig73.14949.1 vs. uniprot
Match: A0A5J5ECR0_9PEZI (Complex 1 protein-domain-containing protein n=1 Tax=Sphaerosporella brunnea TaxID=1250544 RepID=A0A5J5ECR0_9PEZI)

HSP 1 Score: 59.7 bits (143), Expect = 6.610e-10
Identity = 37/75 (49.33%), Postives = 43/75 (57.33%), Query Frame = 1 
Query:   10 RLSGVQREVNQLYRLLLRAAKLKDGGGWDGTTTALVRAEFREQAESVGRADFRTIEHLLRVGNKKLKLLKMPGVK 234
            RLSG+QR+V  LYR  LR  K K            VR EFR     + + DF TIEHLLRVG KKL+L   PG+K
Sbjct:    3 RLSGIQRDVLSLYRSCLRMIKKKPAESQHNFRD-YVRHEFRHNF-GLNKKDFATIEHLLRVGRKKLELYSQPGIK 75
[Close]
BLAST of mRNA_C-linearis_contig73.14949.1 vs. uniprot
Match: A0A3N4KNK3_9PEZI (Complex1_LYR_dom domain-containing protein n=1 Tax=Morchella conica CCBAS932 TaxID=1392247 RepID=A0A3N4KNK3_9PEZI)

HSP 1 Score: 57.8 bits (138), Expect = 3.690e-9
Identity = 33/73 (45.21%), Postives = 43/73 (58.90%), Query Frame = 1 
Query:   16 SGVQREVNQLYRLLLRAAKLKDGGGWDGTTTALVRAEFREQAESVGRADFRTIEHLLRVGNKKLKLLKMPGVK 234
            +G+QR+V  LYRL LR A+ K     +       R EFR   + + + DF TIEHLLRVG KKL+    PG+K
Sbjct:    4 TGIQRDVLALYRLCLREARKKPSDARENFRN-FARDEFRAHLD-IKKKDFATIEHLLRVGQKKLETYSQPGIK 74
[Close]
BLAST of mRNA_C-linearis_contig73.14949.1 vs. uniprot
Match: A0A0L0SFN4_ALLM3 (Complex1_LYR_dom domain-containing protein n=1 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0SFN4_ALLM3)

HSP 1 Score: 57.8 bits (138), Expect = 4.370e-9
Identity = 33/77 (42.86%), Postives = 46/77 (59.74%), Query Frame = 1 
Query:    4 TARLSGVQREVNQLYRLLLRAAKLKDGGGWDGTTTALVRAEFREQAESVGRADFRTIEHLLRVGNKKLKLLKMPGVK 234
            T RLSG+QR+V  LYR  LRAA+ K    +    T  V+ EFR+  +     D   IEHL+RVG ++L+ L+ P +K
Sbjct:    6 TRRLSGLQRDVLHLYRASLRAARTKPAE-YRANWTTFVQHEFRKTMDMHAVRDAHAIEHLVRVGRRRLETLRNPAIK 81
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig73.14949.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JGF9_9PHAE9.600e-4484.09Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
D7FX23_ECTSI8.740e-4083.13Heat shock protein, putative n=1 Tax=Ectocarpus si... [more]
A0A7S1ZYE5_TRICV1.240e-1143.24Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
C5DJD6_LACTC4.060e-1148.72KLTH0F15576p n=2 Tax=Lachancea TaxID=300275 RepID=... [more]
A0A6U0URI4_9STRA1.620e-1057.35Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A5J5FAV1_9PEZI1.670e-1048.72Complex 1 protein-domain-containing protein n=1 Ta... [more]
A0A4S2N7G0_9PEZI5.020e-1046.25Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
A0A5J5ECR0_9PEZI6.610e-1049.33Complex 1 protein-domain-containing protein n=1 Ta... [more]
A0A3N4KNK3_9PEZI3.690e-945.21Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
A0A0L0SFN4_ALLM34.370e-942.86Complex1_LYR_dom domain-containing protein n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig73contigC-linearis_contig73:293531..295875 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.1
Seed ortholog evalue5.9e-10
Seed eggNOG ortholog653948.CCA23842
KEGG koko:K18167
Hectar predicted targeting categoryother localisation
EggNOG OGs2E0UV@1,2S88D@2759
Ec32 ortholog descriptionComplex 1 LYR protein
Ec32 orthologEc-10_003990.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Exons2
Model size267
Cds size267
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930400.8733423-CDS-C-linearis_contig73:293530..2936681622930400.8733423-CDS-C-linearis_contig73:293530..293668Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 293531..293668 +
1690881050.5397108-CDS-C-linearis_contig73:293530..2936681690881050.5397108-CDS-C-linearis_contig73:293530..293668Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 293531..293668 +
1622930400.887323-CDS-C-linearis_contig73:295746..2958751622930400.887323-CDS-C-linearis_contig73:295746..295875Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 295747..295875 +
1690881050.5519278-CDS-C-linearis_contig73:295746..2958751690881050.5519278-CDS-C-linearis_contig73:295746..295875Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 295747..295875 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig73.14949.1prot_C-linearis_contig73.14949.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig73 293531..295875 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig73.14949.1

>prot_C-linearis_contig73.14949.1 ID=prot_C-linearis_contig73.14949.1|Name=mRNA_C-linearis_contig73.14949.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=89bp
MTARLSGVQREVNQLYRLLLRAAKLKDGGGWDGTTTALVRAEFREQAESV
GRADFRTIEHLLRVGNKKLKLLKMPGVKAAAGVTVERR*
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mRNA from alignment at C-linearis_contig73:293531..295875+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig73.14949.1 ID=mRNA_C-linearis_contig73.14949.1|Name=mRNA_C-linearis_contig73.14949.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2345bp|location=Sequence derived from alignment at C-linearis_contig73:293531..295875+ (Chordaria linearis ClinC8C monoicous)
ATGACGGCGAGGCTCTCTGGAGTTCAGCGAGAGGTGAATCAGTTGTATCG
ACTTCTTCTGCGAGCCGCAAAGCTGAAGGACGGTGGAGGATGGGATGGAA
CAACCACCGCGCTTGTCAGGGCAGAGTTTCGTGAGCAGGTAGGTGTGAGA
CACTCCGTAACCGCGTAACCGCGCTATTCCTACTTGGATGTATATAACTT
CGAACCCACAGCGTTCGGGGCCACGCACGGCTCCACGGCCGACGAACCGT
GTGTCTTCGGAGTCCCGAAATTAATTTGGGCGGAGGCGGCGAAGGTGAAG
GGGGGAGTACCGTGGCACGCGGGGGTGCTGCAGGGAGCCGAGAGGTTTAT
GACCTCTTGGCACAAGGACGAGGAGGAGGCGAGCCGACAACGCGCCACCA
AGCGAGGAGACGACGGGCCCAGAAATAGTTTAGACACGGCGCCAACCAAC
GGGACGGGAGGGGGGCGGAAAAAAACGGCGAGGGAAGAAAGCAAGCGAGA
AGAGACCGACCGGGTGGCGCGATATGTGACGGATTGAACCTAGTGACTAT
TTTTTCCTTTTACTTTCCCCTCTCCCCCCCTTTTTTTCGCTGCACCATTA
CACTACCCCCCCGGGGAATGATGTCGTGTTTAGATTTTTATTGCGGGTGC
GACTGCTGTCCCTCTGCGTGTTGGATGTTTTATTTTTGTCGACATGTCTC
CTTGTCTGCTTCCCTTGTAACATATATATATATATATATATGCACCTTAG
TCGGTGGAGAGGGATCCGACTATCTATGTATTTGCCTTGCCGGGGGAACT
GGGACGGAACACCCCGGCTTCGTAGGGGTAGCAAGATAGAATCGGGAGGT
TATACCCCTGGTTGGTGATGCTGGCGCTCCACTATTGTTTTATTTTTATT
TTTGCCTCACATAGCGTGTAGAGGGGAGCGGAGGGCTCCAGCCTATTTGT
TTCCTGATTCTTTTATTTTTCTCGTATTTTATTGCTCTGCTGGCCCTTGG
GGTCCGTCTTATTTTTCAGTATACCTTTTTAGGTAAGTTAGCTTGTGACC
ACGGAAATTGGCCGCGTCAAGTGATGGATAAGTACGGAGAGGTTGAGACA
GAAGGAGGTACTGGATAGAGACGGGACCGGGATGGTTTTTAATGTGAAGA
CAACAACAACAACAACAACAACAACAACAGCAGCAGAGTCTGGAGTTCAA
TTCCAAGCAAAGGTGGTTATTTTGCGACTTTGCCGGTGAAAGCGATAACA
TAGCTGAAAAAGCTCGTGAGGACCAAACTTCGACTTAGCACGTTGACGAG
GGAAAGGGATGGCTGCACAATTCTCGCGATAAAATCCAAGGCAAGCACCG
CAGGAGGAAGGTGGGGCAAAAAAGAAAACAGAAAAAGAAGAACCCCCCCC
CCCAGTGTTTACCCCCTCCTGTGTGACCCCGGTTGGTTCTAGTTGTACAG
AAAAATACACTGAACAAGTGTACCAGGTAGTACTCTAAATACACCGCAAC
GTGTAGTACACGTCTCGCCTTGATCGGAAAGGGACTGTCGCCAAAATAAA
TGGGACGAAAACACACACACACACACACACACACACATGTATGTACGCGT
GGAGGACTCATGACATGACTCAGATTCAATTCCAATTTTGCATGCGAATC
AGCGAGCACACCGGCAGAGGTGTTGGCTGCTGTTGGCAGGGCTCTCTGCA
GCTGATTGTCGTGTAGTCCGCTACGGCGGTTGAGTGCTTTGCGATGGTAT
CCGCAACCCTCCCGCGGAAGTTGGTAGATCCGTTGTTACTGCTGTTTAAA
AAGTAAAGGGCAGAGATGAGGCTGCCGACCCACCAAAAAGAGCATCATGT
ATGTGCTGTCAGAATTTTAGTCTATGCGACCCTCGAGGTGGTCAAGACTG
TTTCGAGCAAATATCAAGCCCTCCCCTTTGCTTCGGATAGATTTCCATAC
TAAATTTACCACGGGTGGTTGACGAATCGGCCTCCAACCGTCTGTCCGGA
AGAATAGAGCCAAGTCTAGAGCTGTTGATTTGCGCTGATCGCCCACACTC
AAAAGCAGCAAAGTCCCCCGTCGAAATGTCTGCGAACAACTAAACACCGC
TGCGCCTGCTCATAACTAAAAAGCTACTGGTCTAGGCTACATTGATGGCG
AAGAAGGCAACGTGTACGGCAGCACCACTACATATCATACCATTTCGCAC
GCTTTTCTGAACACAGGCTGAATCAGTCGGGCGAGCTGACTTCCGCACCA
TCGAGCATCTCCTGCGCGTCGGAAATAAGAAACTGAAGCTCCTCAAGATG
CCCGGTGTCAAGGCGGCGGCCGGTGTGACCGTGGAGCGCCGATGA
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Coding sequence (CDS) from alignment at C-linearis_contig73:293531..295875+

>mRNA_C-linearis_contig73.14949.1 ID=mRNA_C-linearis_contig73.14949.1|Name=mRNA_C-linearis_contig73.14949.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at C-linearis_contig73:293531..295875+ (Chordaria linearis ClinC8C monoicous)
ATGACGGCGAGGCTCTCTGGAGTTCAGCGAGAGGTGAATCAGTTGTATCG
ACTTCTTCTGCGAGCCGCAAAGCTGAAGGACGGTGGAGGATGGGATGGAA
CAACCACCGCGCTTGTCAGGGCAGAGTTTCGTGAGCAGATGACGGCGAGG
CTCTCTGGAGTTCAGCGAGAGGTGAATCAGTTGTATCGACTTCTTCTGCG
AGCCGCAAAGCTGAAGGACGGTGGAGGATGGGATGGAACAACCACCGCGC
TTGTCAGGGCAGAGTTTCGTGAGCAGGCTGAATCAGTCGGGCGAGCTGAC
TTCCGCACCATCGAGCATCTCCTGCGCGTCGGAAATAAGAAACTGAAGCT
CCTCAAGATGCCCGGTGTCAAGGCGGCGGCCGGTGTGACCGTGGAGCGCC
GATGAGCTGAATCAGTCGGGCGAGCTGACTTCCGCACCATCGAGCATCTC
CTGCGCGTCGGAAATAAGAAACTGAAGCTCCTCAAGATGCCCGGTGTCAA
GGCGGCGGCCGGTGTGACCGTGGAGCGCCGATGA
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