mRNA_C-linearis_contig73.14948.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig73.14948.1 vs. uniprot
Match: D7FX24_ECTSI (Rab8C, RAB family GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX24_ECTSI) HSP 1 Score: 493 bits (1270), Expect = 2.470e-168 Identity = 270/326 (82.82%), Postives = 288/326 (88.34%), Query Frame = 1
Query: 559 STPTPRRKRSSTSGINRERQFDGAITGGAGSS--RFGGGXXXXXXXXSGPGNGRGGLSKKTLNIVTNLKSHSTDVRSREEMEDLEEEKRLXXXXXXFKENLRQKGDDFDHTIRILLLGDSGVGKTSLMTRFSEDKFAPTMISTAGVDFKVQTLDIHGKRVKCQIWDTAGQERFHVITRAYYRGAHGIALAYDVTDDDSFKNVNYWMANIQTHADRGHRMQKMILGNKVDIKERTISTKDGQEVAKEFGVRFFEVSAKNGYGVSEAFYTLAVDIVQAMEAANKGGNDERRAARLFGGGAARLRSFASSKKPSFLSGRKISGVSWASG 1530
ST TPRRKR+STSGINRERQFDG +TGG G + RFGGG SGPGNGRGGLSKKTLNIVTNLKSH+TDVRSREEMEDLE XXXXXX ENLRQKGDDFDHTIRILLLGDSGVGKTSLMTRFSEDKFAPT+ISTAGVD+KVQTLDI+GKRV+CQIWDTAGQERFHVITR YYRGAHGIALAYDVTDDDSFKNVNYWMANIQTHA+ GHRMQKMILGNKVDI++R ISTKDGQ+VAKEFGVRFFEVSAKNGYGVS+AFY+LAVDIV AANK G D+RR ARLF GGAARLRS +SKK SFL+GRK+ GVSW G
Sbjct: 32 STATPRRKRTSTSGINRERQFDGTVTGGTGGTGGRFGGGRRR-----SGPGNGRGGLSKKTLNIVTNLKSHTTDVRSREEMEDLEXXXXXXXXXXXXXENLRQKGDDFDHTIRILLLGDSGVGKTSLMTRFSEDKFAPTLISTAGVDYKVQTLDINGKRVRCQIWDTAGQERFHVITRTYYRGAHGIALAYDVTDDDSFKNVNYWMANIQTHAEPGHRMQKMILGNKVDIEDRAISTKDGQDVAKEFGVRFFEVSAKNGYGVSDAFYSLAVDIV----AANKRGADDRRGARLFSGGAARLRSSFASKKTSFLTGRKLGGVSWPGG 348
BLAST of mRNA_C-linearis_contig73.14948.1 vs. uniprot
Match: A0A6H5JLN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN2_9PHAE) HSP 1 Score: 448 bits (1152), Expect = 3.900e-150 Identity = 280/437 (64.07%), Postives = 304/437 (69.57%), Query Frame = 1
Query: 4 MSGSADEFCVVEPLMLVDDGLIQQSGTSGGIEGITFAPVPPAAPDTPAXXXXXXXXKHDNASXXXXXXXXXXXAA--VPSVLADDELWGPPPGARRPYQAR--RSGVGAXXXXXXXXXXXXXXXTSPPWTGTDEFGGDAI--AGVVAGGAACAAGRGQMESAGEAAGATXXXXXXXXXXXXXXGAGPA--------GGRSTPTPRRKRSSTSGINRERQFDGAITGGAGS-----SRFGGGXXXXXXXXSGPGNGRGGLSKKTLNIVTNLKSHSTDVRSREEMEDLEEEKRLXXXXXXFKENLRQKGDDFDHTIRILLLGDSGVGKTSLMTRFSEDKFAPTMISTAGVDFKVQTLDIHGKRVKCQIWDTAGQERFHVITRAYYRGAHGIALAYDVTDDDSFKNVNYWMANIQTHADRGHRMQKMILGNKVDIKERTI 1257
MSG ADEFC+VEPL V Q G G E + FAP P AAP+TPA ++ ++ V SVLADDELWGPP GARRP+QAR XXXXXXX SPPWTG ++GG AG V GGA+ A G G E+A G G GPA G R+T TPRRKR+STSGINRERQFDG +TGG SRFG G SGPGNGRGGLSKKTLNIVTNLKSH+TDVRSREEMEDLEEE XXXXXX KENLRQKGDDFD TIRILLLGDSGVGKTSLMTRFSEDKFAPT+ISTAGVD+KVQTLDI+GKRV+CQIWDTAGQERFHVITR YYRGAHGIALAYDVTDDDSFKNVNYWMANIQTHA+ GHRMQKMILGNKVDI++R +
Sbjct: 1 MSGQADEFCLVEPLAAVGINPGQSPGQPRGAECVVFAPAPTAAPNTPAPLLAGTSTNANSCLNGNGGSSNSSNSSGVVHSVLADDELWGPPAGARRPFQARGXXXXXXXXXXXXXXGAVASRRAISPPWTGNIDYGGGCSGGAGRVDGGASAAEGDGFREAARVGGG---------------LGLGPAAVAAVTANGVRNTATPRRKRTSTSGINRERQFDGTVTGGTXXXXXXXSRFGRGRRR-----SGPGNGRGGLSKKTLNIVTNLKSHTTDVRSREEMEDLEEEXXXXXXXXXXKENLRQKGDDFDRTIRILLLGDSGVGKTSLMTRFSEDKFAPTLISTAGVDYKVQTLDINGKRVRCQIWDTAGQERFHVITRTYYRGAHGIALAYDVTDDDSFKNVNYWMANIQTHAEPGHRMQKMILGNKVDIEDRAV 417
BLAST of mRNA_C-linearis_contig73.14948.1 vs. uniprot
Match: A0A836C8W2_9STRA (Ras family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8W2_9STRA) HSP 1 Score: 241 bits (616), Expect = 1.800e-72 Identity = 120/172 (69.77%), Postives = 145/172 (84.30%), Query Frame = 1
Query: 883 TIRILLLGDSGVGKTSLMTRFSEDKFAPTMISTAGVDFKVQTLDIHGKRVKCQIWDTAGQERFHVITRAYYRGAHGIALAYDVTDDDSFKNVNYWMANIQTHADRGHR--MQKMILGNKVDI--KERTISTKDGQEVAKEFGVRFFEVSAKNGYGVSEAFYTLAVDIVQAME 1386
TIRILLLGDSGVGKTSLM R++ED F+P ++STAGVDFKV+ LDI+G+RV+CQIWDTAGQE+FHVITRAYYRGAHGIAL YDV D DSFKNVNYW+ANIQTHA R + K++LGNKVD+ + R +S+ G EV +EFGVR+FEVSAK+G GV +AF TLA +IV+ +E
Sbjct: 2 TIRILLLGDSGVGKTSLMLRYTEDHFSPNLLSTAGVDFKVRHLDINGRRVRCQIWDTAGQEKFHVITRAYYRGAHGIALVYDVADADSFKNVNYWVANIQTHAPAAGREGICKVLLGNKVDLPAEHREVSSAAGNEVGEEFGVRYFEVSAKDGTGVQDAFDTLAREIVEGLE 173
BLAST of mRNA_C-linearis_contig73.14948.1 vs. uniprot
Match: W7U9Z1_9STRA (Rab family gtpase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U9Z1_9STRA) HSP 1 Score: 211 bits (538), Expect = 2.920e-60 Identity = 108/173 (62.43%), Postives = 137/173 (79.19%), Query Frame = 1
Query: 883 TIRILLLGDSGVGKTSLMTRFSEDKFAPTMISTAGVDFKVQ--TLDIHGKRVKCQIWDTAGQERFHVITRAYYRGAHGIALAYDVTDDDSFKNVNYWMANIQTHADRGHRMQKMILGNKVDIKERTISTKDGQEVAKEFG-VRFFEVSAKNGYGVSEAFYTLAVDIVQAMEAA 1392
+IRILLLGDSGVGKTSLM R+SE++FAP ++STAGVDFKV+ TL+ ++VK QIWDTAGQER HVITR YY+G+HGIAL Y++TD DSF+NVNYWMANIQ HA G ++ K ++GNK D+ +R IS + G +AKE+G + FFE SAK+G V AF LA+DIV+ +E A
Sbjct: 105 SIRILLLGDSGVGKTSLMMRYSENEFAPCLLSTAGVDFKVRHLTLEESKRKVKVQIWDTAGQERMHVITRTYYKGSHGIALVYNLTDPDSFRNVNYWMANIQQHA--GDKVVKTLIGNKADLTDRAISYEQGAAMAKEYGFMHFFETSAKSGANVHGAFNALALDIVRRIEEA 275
BLAST of mRNA_C-linearis_contig73.14948.1 vs. uniprot
Match: A0A367K4H9_RHIAZ (GTP-binding protein n=20 Tax=Mucorales TaxID=4827 RepID=A0A367K4H9_RHIAZ) HSP 1 Score: 206 bits (525), Expect = 1.450e-59 Identity = 99/175 (56.57%), Postives = 130/175 (74.29%), Query Frame = 1
Query: 862 KGDDFDHTIRILLLGDSGVGKTSLMTRFSEDKFAPTMISTAGVDFKVQTLDIHGKRVKCQIWDTAGQERFHVITRAYYRGAHGIALAYDVTDDDSFKNVNYWMANIQTHADRGHRMQKMILGNKVDIKE-RTISTKDGQEVAKEFGVRFFEVSAKNGYGVSEAFYTLAVDIVQAM 1383
K +D+ I++LL+GDSGVGK+ L+ RFS+D F P+ I+T G+DFK++T+++ GKR+K QIWDTAGQERF IT AYYRGA GI L YDVTD+ SF NV W +NI+ HA G + K+++GNK D++E R ISTK GQE+A E G+RF E SAK GV EAF+ LA DI + +
Sbjct: 5 KSASYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDERSFSNVRNWFSNIEQHASEG--VNKILIGNKSDMEEKRVISTKQGQELANELGIRFMETSAKANIGVEEAFFDLARDIKKRL 177
BLAST of mRNA_C-linearis_contig73.14948.1 vs. uniprot
Match: A0A1Y2HP65_9FUNG (Ras family-domain-containing protein n=1 Tax=Catenaria anguillulae PL171 TaxID=765915 RepID=A0A1Y2HP65_9FUNG) HSP 1 Score: 206 bits (524), Expect = 2.040e-59 Identity = 98/196 (50.00%), Postives = 141/196 (71.94%), Query Frame = 1
Query: 862 KGDDFDHTIRILLLGDSGVGKTSLMTRFSEDKFAPTMISTAGVDFKVQTLDIHGKRVKCQIWDTAGQERFHVITRAYYRGAHGIALAYDVTDDDSFKNVNYWMANIQTHADRGHRMQKMILGNKVDIKERTISTKD-GQEVAKEFGVRFFEVSAKNGYGVSEAFYTLAVDIVQAM--EAANKGGNDERRAARLFGG 1440
K +DH I++LL+GDSGVGK+ L+ RF++D F P+ I+T G+DFK++T+++ GKR+K QIWDTAGQERF IT AYYRGA GI L YDVTD+ SF N+ W+ NI+ HA G + K+++GNK D+ ++ + +K+ GQE+A EFG++F E SAK+ GV EAF++LA DI + + GG+D++ + GG
Sbjct: 4 KSSTYDHLIKLLLIGDSGVGKSCLLLRFTDDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLIYDVTDERSFNNIRNWIRNIEQHASAG--VNKILVGNKCDVADKKVISKEQGQELADEFGIKFIETSAKSNIGVEEAFFSLAKDIKKRLIDSQGAAGGDDDKNKVDISGG 197
BLAST of mRNA_C-linearis_contig73.14948.1 vs. uniprot
Match: C1GSK5_PARBA (GTP-binding protein SAS1 n=41 Tax=Eurotiomycetidae TaxID=451871 RepID=C1GSK5_PARBA) HSP 1 Score: 205 bits (522), Expect = 3.520e-59 Identity = 97/173 (56.07%), Postives = 129/173 (74.57%), Query Frame = 1
Query: 871 DFDHTIRILLLGDSGVGKTSLMTRFSEDKFAPTMISTAGVDFKVQTLDIHGKRVKCQIWDTAGQERFHVITRAYYRGAHGIALAYDVTDDDSFKNVNYWMANIQTHADRGHRMQKMILGNKVDIKE-RTISTKDGQEVAKEFGVRFFEVSAKNGYGVSEAFYTLAVDIVQAME 1386
++D I++LL+GDSGVGK+ + RFSED F P+ I+T G+DFK++T+++ GKRVK QIWDTAGQERF IT AYYRGA GI L YDVTD+ SF N+ W +N++ HA G + KM++GNK D +E R +ST+ GQ++A E G+ F EVSAKN V +AFYTLA DI + M+
Sbjct: 6 NYDFLIKLLLIGDSGVGKSCCLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRVKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDERSFNNIRTWFSNVEQHASEG--VHKMLIGNKCDWEEKRAVSTEQGQQLANELGIPFLEVSAKNNINVEKAFYTLASDIKRVMD 176
BLAST of mRNA_C-linearis_contig73.14948.1 vs. uniprot
Match: C1E6E1_MICCC (Ras-related gtp-binding protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E6E1_MICCC) HSP 1 Score: 204 bits (520), Expect = 6.070e-59 Identity = 99/178 (55.62%), Postives = 132/178 (74.16%), Query Frame = 1
Query: 874 FDHTIRILLLGDSGVGKTSLMTRFSEDKFAPTMISTAGVDFKVQTLDIHGKRVKCQIWDTAGQERFHVITRAYYRGAHGIALAYDVTDDDSFKNVNYWMANIQTHADRGHRMQKMILGNKVDIKE-RTISTKDGQEVAKEFGVRFFEVSAKNGYGVSEAFYTLAVDIVQAMEAANKGG 1404
+DH I++LL+GDSGVGK+ L+ RFSED+F + I+T G+DFK++T+++ GKRVK QIWDTAGQERF IT AYYRGAHGI L YDVTD+ SF NV WM NI+ HA G + K+++GNK D +E R IST+ G+ +AKEFG+ FFE SAK V++AF+ +A I ++ + GG
Sbjct: 8 YDHLIKLLLIGDSGVGKSCLLLRFSEDQFTSSFITTIGIDFKIRTVELDGKRVKLQIWDTAGQERFRTITNAYYRGAHGILLTYDVTDEGSFNNVRNWMRNIEQHASDG--VSKVLVGNKSDAEEKRVISTEQGEALAKEFGIPFFETSAKANTNVNDAFFAIARIIKAGLKTSGDGG 183
BLAST of mRNA_C-linearis_contig73.14948.1 vs. uniprot
Match: A0A1Y1WX38_9FUNG (Ras-domain-containing protein n=4 Tax=Neocallimastigaceae TaxID=29007 RepID=A0A1Y1WX38_9FUNG) HSP 1 Score: 204 bits (520), Expect = 7.130e-59 Identity = 96/175 (54.86%), Postives = 131/175 (74.86%), Query Frame = 1
Query: 862 KGDDFDHTIRILLLGDSGVGKTSLMTRFSEDKFAPTMISTAGVDFKVQTLDIHGKRVKCQIWDTAGQERFHVITRAYYRGAHGIALAYDVTDDDSFKNVNYWMANIQTHADRGHRMQKMILGNKVDIKERTISTKD-GQEVAKEFGVRFFEVSAKNGYGVSEAFYTLAVDIVQAM 1383
K +D+ I++LL+GDSGVGK+ L+ RFSED F P+ I+T G+DFK++T+++ GKR+K QIWDTAGQERF IT AYYRGA GI L YDVTD+ SF N+ W+ NI+ HA G K+++GNK DI E+ + TK+ G+ +A+EFG+RF E SAK+ GV EAF++LA DI + +
Sbjct: 5 KSASYDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDERSFNNIRNWIRNIEQHASEG--ANKILIGNKCDILEKKVITKEQGESLAEEFGIRFLETSAKSNIGVEEAFFSLARDIKKRL 177
BLAST of mRNA_C-linearis_contig73.14948.1 vs. uniprot
Match: A0A4P9X932_9FUNG (Uncharacterized protein n=1 Tax=Caulochytrium protostelioides TaxID=1555241 RepID=A0A4P9X932_9FUNG) HSP 1 Score: 203 bits (517), Expect = 1.960e-58 Identity = 95/175 (54.29%), Postives = 131/175 (74.86%), Query Frame = 1
Query: 862 KGDDFDHTIRILLLGDSGVGKTSLMTRFSEDKFAPTMISTAGVDFKVQTLDIHGKRVKCQIWDTAGQERFHVITRAYYRGAHGIALAYDVTDDDSFKNVNYWMANIQTHADRGHRMQKMILGNKVDIKERTISTKD-GQEVAKEFGVRFFEVSAKNGYGVSEAFYTLAVDIVQAM 1383
K +D+ I++LL+GDSGVGK+ L+ RFS+D F P+ I+T G+DFK++T+++ GKR+K QIWDTAGQERF IT AYYRGA GI L YDVTD+ SF N+ W+ NI+ HA G + K+++GNK DI E+ + +KD GQ +A E+G++F E SAK+ GV EAF+TLA DI + +
Sbjct: 5 KSASYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDERSFNNIRNWIRNIEQHASEG--VNKILVGNKCDILEKKVISKDQGQSLADEYGIKFLETSAKSNIGVEEAFFTLARDIKKRL 177 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig73.14948.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig73.14948.1 >prot_C-linearis_contig73.14948.1 ID=prot_C-linearis_contig73.14948.1|Name=mRNA_C-linearis_contig73.14948.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=588bp MSGSADEFCVVEPLMLVDDGLIQQSGTSGGIEGITFAPVPPAAPDTPAPPback to top mRNA from alignment at C-linearis_contig73:285761..293384- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig73.14948.1 ID=mRNA_C-linearis_contig73.14948.1|Name=mRNA_C-linearis_contig73.14948.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=7624bp|location=Sequence derived from alignment at C-linearis_contig73:285761..293384- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig73:285761..293384- >mRNA_C-linearis_contig73.14948.1 ID=mRNA_C-linearis_contig73.14948.1|Name=mRNA_C-linearis_contig73.14948.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3528bp|location=Sequence derived from alignment at C-linearis_contig73:285761..293384- (Chordaria linearis ClinC8C monoicous)back to top |