mRNA_C-linearis_contig73.14942.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig73.14942.1
Unique NamemRNA_C-linearis_contig73.14942.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig73.14942.1 vs. uniprot
Match: A0A6H5JGL0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGL0_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 4.690e-10
Identity = 28/66 (42.42%), Postives = 35/66 (53.03%), Query Frame = 2 
Query:  347 TAGTCTKCGGDYSFCTYCADGDCEEKFCNMCRESLPECSRCFEKACEGSGSPDTDCFLPCEGNTDC 544
            T+  C+ CG   ++       DCE   C  C   LPECS C    CEG+G P+TDC LPC+G   C
Sbjct:   32 TSEACSMCGSRKTYTPGSVCADCETYACYKCEGPLPECSSCLMSFCEGTGDPETDCLLPCQGQPGC 97
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig73.14942.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JGL0_9PHAE4.690e-1042.42Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig73contigC-linearis_contig73:216026..220626 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons7
Model size1193
Cds size1002
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig73.14942.1prot_C-linearis_contig73.14942.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig73 217343..220626 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930396.4675443-UTR-C-linearis_contig73:216025..2161451622930396.4675443-UTR-C-linearis_contig73:216025..216145Chordaria linearis ClinC8C monoicousUTRC-linearis_contig73 216026..216145 +
1690881048.5855336-UTR-C-linearis_contig73:216025..2161451690881048.5855336-UTR-C-linearis_contig73:216025..216145Chordaria linearis ClinC8C monoicousUTRC-linearis_contig73 216026..216145 +
1622930396.4848735-UTR-C-linearis_contig73:217272..2173421622930396.4848735-UTR-C-linearis_contig73:217272..217342Chordaria linearis ClinC8C monoicousUTRC-linearis_contig73 217273..217342 +
1690881048.599231-UTR-C-linearis_contig73:217272..2173421690881048.599231-UTR-C-linearis_contig73:217272..217342Chordaria linearis ClinC8C monoicousUTRC-linearis_contig73 217273..217342 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930396.5022624-CDS-C-linearis_contig73:217342..2175701622930396.5022624-CDS-C-linearis_contig73:217342..217570Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 217343..217570 +
1690881048.60908-CDS-C-linearis_contig73:217342..2175701690881048.60908-CDS-C-linearis_contig73:217342..217570Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 217343..217570 +
1622930396.5252135-CDS-C-linearis_contig73:218063..2181951622930396.5252135-CDS-C-linearis_contig73:218063..218195Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 218064..218195 +
1690881048.6194155-CDS-C-linearis_contig73:218063..2181951690881048.6194155-CDS-C-linearis_contig73:218063..218195Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 218064..218195 +
1622930396.5447133-CDS-C-linearis_contig73:218878..2189561622930396.5447133-CDS-C-linearis_contig73:218878..218956Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 218879..218956 +
1690881048.6303725-CDS-C-linearis_contig73:218878..2189561690881048.6303725-CDS-C-linearis_contig73:218878..218956Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 218879..218956 +
1622930396.5628998-CDS-C-linearis_contig73:219296..2193681622930396.5628998-CDS-C-linearis_contig73:219296..219368Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 219297..219368 +
1690881048.6400082-CDS-C-linearis_contig73:219296..2193681690881048.6400082-CDS-C-linearis_contig73:219296..219368Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 219297..219368 +
1622930396.5794814-CDS-C-linearis_contig73:219828..2199211622930396.5794814-CDS-C-linearis_contig73:219828..219921Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 219829..219921 +
1690881048.650928-CDS-C-linearis_contig73:219828..2199211690881048.650928-CDS-C-linearis_contig73:219828..219921Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 219829..219921 +
1622930396.6131656-CDS-C-linearis_contig73:220227..2206261622930396.6131656-CDS-C-linearis_contig73:220227..220626Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 220228..220626 +
1690881048.661046-CDS-C-linearis_contig73:220227..2206261690881048.661046-CDS-C-linearis_contig73:220227..220626Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 220228..220626 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig73.14942.1

>prot_C-linearis_contig73.14942.1 ID=prot_C-linearis_contig73.14942.1|Name=mRNA_C-linearis_contig73.14942.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=334bp
MEGHRSLVHAPPSLSGGGGGSGSRFEPLAGERNGNSNSNSNSNAVVQPRR
AGTAGTCTKCGGDYSFCTYCADGDCEEKFCNMCRESLPECSRCFEKACEG
SGSPDTDCFLPCEGNTDCWNGVCRLCKEARSGCAICDATVCLQCNEGCSG
CSTVCCAKCARYTSIPGFCEGCNATSCLLCMMHRNPCTLCGHVVSMERLR
EAYERTGFVRKWLELPGLPPDAQALRAQVARCWVALLKDPKAVIAPARRS
VHVIGGSGGGGGCGGGGGGGGAGYSAGKITPSLQQPAATQPPREGYPNLH
NPRQNGGDAARELWAGSKVAAVVGGRWSAQEGRG
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mRNA from alignment at C-linearis_contig73:216026..220626+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig73.14942.1 ID=mRNA_C-linearis_contig73.14942.1|Name=mRNA_C-linearis_contig73.14942.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4601bp|location=Sequence derived from alignment at C-linearis_contig73:216026..220626+ (Chordaria linearis ClinC8C monoicous)
AATGTGGAGCCTACCGACCGACCTCCACACGCTCCAAGCTCCAAGAACAC
GCGAACACGCGGGAGCAGAGAGAGAGAGCGGGGGGTCCTAAGAGAGACCG
GCAGCTACAGATCCGAGAGGGTGAGTGCGGTTATCGCAGCGGGAGAGAGG
GAGATCGGGAGAGGCAGAGATAGAGGTATCGAGATGACACAGAGAAAAAA
GTGGGTTGTTTGCCATGTTGACGCTGCTGAAATGGTGCATGTAAAGCGCG
TGGCTTTTCGTTTTTTCTTGCCTGCATGGGTGAGCAAGGGGAGAGATACT
GAGGAACACCATTCGTAATATACATAAGGGTTGAAACATTGAGTGGGTTC
TGTTCATTGTCCACCCCTTGTCTCACGATGTCCACCCCTCGTCTTGGCTG
CTATTAATAGTTGCTGTTTCCAGAACGCGCAATGACGAAAACCACGCGTC
ATGACAGCGGTAGATCGAAAAGTGCCCTACGCAGGACCAACTTGCACTAG
GCTACAAGACAAAAGTAGGGCGGAGAGAGAGAGAGAGAGAGAGAGACGGA
GAGGCGATTAAATCAGCCGAAGGCGTTGGCATTTCTTTGACGAAACCTCT
CTCGTGCTGCGATGACTTCCGTCTACAACGCAAGTAGGTACATAAAACAG
AGTCGTAGGCCCTCTCAGAGCGGACAACCAGATGAAGATCCTCCGTGGGC
ATGCCTGTGATTCAGCCCCCCCCACAAACCACAAAGGAGCTTTGGCCGTA
TGTGGGACGTCGGGGAGGGATGCTGTAAGGTCGGAGCTGCTGTAGCTAGA
CTTAAAAGCAAAACACGCAACCTCCTTGCAGAGTAGCGTAGTCCGCCGAA
TCTGCGTCGGGCGAATGCTCGCACACGCTGTTATTGTGAGCGTGGACAGA
GTATCGGGGGCAAGATATATCCCACAGCTAACTGCTGCGCGAGCGAGAGC
CATCGTGATTTATAACCGCAAAGGACCCCCGCACGACCGCAACATACATG
ACCCCAAGAACCCCGGGTTGTTTCATTCACTCCTACAGCGGTAGTAGACT
AAGGCTCATTCTACATACAAGATGACATTCAACCACCTATCAAACCTGGT
ACAGTAAATTCTTGACTGATGTTCATGTCACCTTGGTCGTGCGCCCATCA
TCCACGGTCCTCACCCGGGTTTCGATTGCCACGTCCCCGTCCCTCTCCCC
CCCCGAAAACGCGCAACACTCCATCCAATCGGGACACAAAATTACAGCTC
GGGGTTCCCGAGAACGCTGGCAGCGAAGGAGCCACGTTTAGGATCGGCCC
TACCCGCCTTTCCTGGCATGGAAGGCCACCGATCTCTGGTGCATGCCCCT
CCGTCTCTCAGCGGCGGCGGCGGTGGCAGTGGCAGTCGCTTCGAACCACT
TGCTGGCGAAAGGAACGGCAACAGCAACAGCAACAGCAACAGCAACGCCG
TCGTTCAACCGAGGCGTGCGGGGACGGCGGGGACGTGCACAAAATGCGGA
GGCGATTACTCATTCTGCACTTATTGCGCGGATGGGGATTGCGAGGTACC
GCTGTGTCTACACGACTTTTCCACTTTAGACTGGGGGCGTTGTTGCTCTC
ACTCCGGCTACTCCTGTTCTCACTTTTGCGGGTTTCTTCCATGAAGTCTC
ATCGCCTTTTAAGCGTGCGTGTGGGCCGGACACCCTGAGCCACCTAGTTT
TTTTGTGTCCCGTCACGTTCTCCCCTGTTTCACTCTTTTCTGACCGCCGG
GGACCAATGAAGGCTTTTCTGACCTTGACAAAAACAAGCGCCAATTCCGC
CGACCCTCCAAGGTTGTACGTACAACAAGCCATGTGGTGGCCTTTTGCGC
ACTCTCGCCAACAAAACAACGTAGAATAATTGTAAACCCCCGTTTTCTAG
TTCATACCCAACCATTTTGTGGATTTGTTGGTACCTATCGGTGTCGAAGA
CGTGAACGTGTTTTGAGCGGCACGGCATCTCACGTTACCCCCCTACCTCT
CTCTTATGTTCCATTACCCCTGCCCCCCGTCTGTGCAGGAGAAATTCTGC
AACATGTGCCGGGAGTCCCTCCCGGAGTGCTCTAGGTGCTTCGAGAAGGC
CTGCGAGGGGAGCGGCAGCCCCGATACGGACTGCTTCCTTCCTTGCGAGG
GGAATACGGATTGTTGGAATGTGCGTATTGGCGTTCGTGTGTGCTGTGTG
TACTCCGAACGATGCATGTTTGTATTCACGTTCTTGGAAGTATGTACGAA
TGGGCGTTTTATGTCTGTTTCAATGTAGGTGGCGTGTGTAGCGACGCATC
TAACGTACGAGAATGCAAATACATCGAAACAACGCATGAAACCCCGACCT
GGGAAGGGAGGCAGATACACAAGTACTTCGTAAAAATCTAGAGAGAAATA
CTAACAAGTTGTGCTGCTGCTACTCTTTTATCTGTAGTGTTTCCCGCTTT
CGAGATAGCGTGGACTGCGTCGGTCTGCGTCAAACTAGCATCAGCTTGTC
CGCGTGGTGTTGTGCGGTGGAGCCGAGCCAGGCATAGGGTGTGCAACTTT
ATGAGGCTCCTTGCCCTCCCAGCATGGCCGAAAGAAACACTGCTGCATTT
TTTTTTTTGTCAACCGACATCTAAATTGGAAGCCTCGCTAGGAAGAGATC
AACCGCCTGCGTGCGCGCACTTTGCGCGTGTTTTTGCGAACACGACCTGA
AGGCGCTTTTTGATGTTTACTGCTGTTTCCGCACTTTTTGTTCGCGACAC
GTTTTCATGCCGAAATTGGCGACGATGACGATGACGATGACGATGACGGC
GATGGTGATGGTGATGGTGATGGTGATGGTGATGACCGCGGTAACCGACT
CAGGGTGTCTGTCGCCTGTGCAAGGAGGCCAGATCTGGTTGCGCTATCTG
CGACGCCACGGTCTGCCTGCAATGCAACGAGGCATGTGACTAATAGGCTG
AGATATACCTTTTGCCCGTAGCAGCGCATGTAGACGGAGTGCGTGGATGA
AGAACAACAGCACGTGGTAGTACCGATAAGATTGTCGAGGCCAGGTCAAT
TGTAAACATCGGGGCAGAGCACCAAGTGAAACCTGGCAACAGCAGCAGCA
GCCGTACATAACGAGCAGGCGCCGAAGGATTTTTTTGTTTGTGTGGGTGT
GGCATGCGCGTTGGCGTGCATGGACGCCACACAAATCATAGCCATTGCCC
ATCGCCTCGATACAGACACCTCCTACCCAACCCAACCCAACCCGAACCAA
CCCATCTTGTCCCCTCGTCAGGGATGTTCTGGTTGCAGCACCGTCTGCTG
CGCTAAGTGCGCCAGGTACACCAGTATCCCGGGCTTCTGCGAGGTAACGT
AATCAAGCACGTAGGTGCGAGTAGACTGGCTAGGTTTTCTGTAGAGAGGC
ACTGGTTTTGTGCCGTTTCGTTTGAAGCCAGTCCCGCCGCGCACGGTGTC
TTTTTGGCAGCGTAGATATGCCATTGGTGGGTTTTGTCTTCTTTCTGTTG
GTTTTGACGTGTTCCGTACCACTTCGACAACTGCACTCCGTATCTTGTGC
TGATTGTTGTTGTTGTTGTTGTTGTTGTCCTTTACATCGCCACTCTCAGC
TAGCGCTCTGCAGTTGCATTATTGTTGTTCTGCAGCTCTGTTTACTCGCG
TATGCATCGTTGTCGGCGTACCTCCAAGTCTGTAGAACCTTCTTGTGTGC
GTCTTGCGCGTATTAGTGCTTGTATTTATGTAACGCCCCTTGCTTGAATT
GTTGCCCCCGGGTTGCCCGGGTTCGTTTCTTGTGCGCTGCTCGCTTGGAA
AAGGGATGCAACGCGACCAGCTGCCTGTTGTGTATGATGCATAGGAACCC
TTGCACCCTGTGCGGGCATGTCGTCAGCATGGAGCGGCTCCGTGAGGTAC
GTAAAAGTACCGCGGCAGGTAACAGCAGAAAAACCAAGCCTCTCATGATT
TACCACGCAGGCAATTTTCCATGTCGCGCCTCGATCGGCAGCAGCGTTTG
AACGATCGATGTCCGGCCGCGCTTTCGTGTCCACTGTAGTTATCTACTCT
GTAGCTAGTAGCAACTCCGCCATAGGGACGCAACTGCTGTGTGCGTCGCT
GTTTCAAATGCTGTACCCCCTTCCCCCCCCGTCCACTACGCCGCATCGCC
CAAACCCGTCTGGAATAAAACCCAAACTTCAAACTTCCAATACACCACGC
AGGCATATGAGAGGACGGGTTTCGTACGCAAGTGGTTAGAATTGCCCGGG
CTGCCTCCCGATGCGCAGGCGTTGCGCGCTCAGGTCGCGCGGTGCTGGGT
AGCCCTCCTCAAAGACCCTAAGGCCGTGATTGCCCCTGCTAGACGTAGCG
TTCATGTTATTGGTGGTAGTGGTGGTGGCGGTGGTTGTGGTGGTGGCGGT
GGCGGTGGCGGGGCTGGGTATTCTGCAGGGAAAATAACGCCGTCGCTACA
GCAGCCGGCCGCCACCCAACCTCCAAGAGAGGGTTACCCCAACCTGCACA
ACCCTAGGCAAAACGGTGGTGATGCGGCGCGGGAGCTTTGGGCGGGGTCC
AAAGTCGCCGCGGTGGTAGGGGGTCGCTGGAGCGCGCAAGAAGGACGGGG
A
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Coding sequence (CDS) from alignment at C-linearis_contig73:216026..220626+

>mRNA_C-linearis_contig73.14942.1 ID=mRNA_C-linearis_contig73.14942.1|Name=mRNA_C-linearis_contig73.14942.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2004bp|location=Sequence derived from alignment at C-linearis_contig73:216026..220626+ (Chordaria linearis ClinC8C monoicous)
ATGGAAGGCCACCGATCTCTGGTGCATGCCCCTCCGTCTCTCAGCGGCGG
CGGCGGTGGCAGTGGCAGTCGCTTCGAACCACTTGCTGGCGAAAGGAACG
GCAACAGCAACAGCAACAGCAACAGCAACGCCGTCGTTCAACCGAGGCGT
GCGGGGACGGCGGGGACGTGCACAAAATGCGGAGGCGATTACTCATTCTG
CACTTATTGCGCGGATGGGGATTGCGAGATGGAAGGCCACCGATCTCTGG
TGCATGCCCCTCCGTCTCTCAGCGGCGGCGGCGGTGGCAGTGGCAGTCGC
TTCGAACCACTTGCTGGCGAAAGGAACGGCAACAGCAACAGCAACAGCAA
CAGCAACGCCGTCGTTCAACCGAGGCGTGCGGGGACGGCGGGGACGTGCA
CAAAATGCGGAGGCGATTACTCATTCTGCACTTATTGCGCGGATGGGGAT
TGCGAGGAGAAATTCTGCAACATGTGCCGGGAGTCCCTCCCGGAGTGCTC
TAGGTGCTTCGAGAAGGCCTGCGAGGGGAGCGGCAGCCCCGATACGGACT
GCTTCCTTCCTTGCGAGGGGAATACGGATTGTTGGAATGAGAAATTCTGC
AACATGTGCCGGGAGTCCCTCCCGGAGTGCTCTAGGTGCTTCGAGAAGGC
CTGCGAGGGGAGCGGCAGCCCCGATACGGACTGCTTCCTTCCTTGCGAGG
GGAATACGGATTGTTGGAATGGTGTCTGTCGCCTGTGCAAGGAGGCCAGA
TCTGGTTGCGCTATCTGCGACGCCACGGTCTGCCTGCAATGCAACGAGGG
TGTCTGTCGCCTGTGCAAGGAGGCCAGATCTGGTTGCGCTATCTGCGACG
CCACGGTCTGCCTGCAATGCAACGAGGGATGTTCTGGTTGCAGCACCGTC
TGCTGCGCTAAGTGCGCCAGGTACACCAGTATCCCGGGCTTCTGCGAGGG
ATGTTCTGGTTGCAGCACCGTCTGCTGCGCTAAGTGCGCCAGGTACACCA
GTATCCCGGGCTTCTGCGAGGGATGCAACGCGACCAGCTGCCTGTTGTGT
ATGATGCATAGGAACCCTTGCACCCTGTGCGGGCATGTCGTCAGCATGGA
GCGGCTCCGTGAGGGATGCAACGCGACCAGCTGCCTGTTGTGTATGATGC
ATAGGAACCCTTGCACCCTGTGCGGGCATGTCGTCAGCATGGAGCGGCTC
CGTGAGGCATATGAGAGGACGGGTTTCGTACGCAAGTGGTTAGAATTGCC
CGGGCTGCCTCCCGATGCGCAGGCGTTGCGCGCTCAGGTCGCGCGGTGCT
GGGTAGCCCTCCTCAAAGACCCTAAGGCCGTGATTGCCCCTGCTAGACGT
AGCGTTCATGTTATTGGTGGTAGTGGTGGTGGCGGTGGTTGTGGTGGTGG
CGGTGGCGGTGGCGGGGCTGGGTATTCTGCAGGGAAAATAACGCCGTCGC
TACAGCAGCCGGCCGCCACCCAACCTCCAAGAGAGGGTTACCCCAACCTG
CACAACCCTAGGCAAAACGGTGGTGATGCGGCGCGGGAGCTTTGGGCGGG
GTCCAAAGTCGCCGCGGTGGTAGGGGGTCGCTGGAGCGCGCAAGAAGGAC
GGGGAGCATATGAGAGGACGGGTTTCGTACGCAAGTGGTTAGAATTGCCC
GGGCTGCCTCCCGATGCGCAGGCGTTGCGCGCTCAGGTCGCGCGGTGCTG
GGTAGCCCTCCTCAAAGACCCTAAGGCCGTGATTGCCCCTGCTAGACGTA
GCGTTCATGTTATTGGTGGTAGTGGTGGTGGCGGTGGTTGTGGTGGTGGC
GGTGGCGGTGGCGGGGCTGGGTATTCTGCAGGGAAAATAACGCCGTCGCT
ACAGCAGCCGGCCGCCACCCAACCTCCAAGAGAGGGTTACCCCAACCTGC
ACAACCCTAGGCAAAACGGTGGTGATGCGGCGCGGGAGCTTTGGGCGGGG
TCCAAAGTCGCCGCGGTGGTAGGGGGTCGCTGGAGCGCGCAAGAAGGACG
GGGA
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