mRNA_C-linearis_contig73.14940.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig73.14940.1 vs. uniprot
Match: D7FX21_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX21_ECTSI) HSP 1 Score: 412 bits (1059), Expect = 1.100e-118 Identity = 238/383 (62.14%), Postives = 268/383 (69.97%), Query Frame = 2
Query: 3269 AIAADMSLEDRLKKAIERGNAIAIQSIYDEADQTPGAGMKKIKKKCQRWLNKKAGEEQKLQQATKPAPVLRAAGAAGAAATALASQRPTHFEMFCPNNIAPQLIGKMGMTINRLMKESKAKIVVRPHPDKSGNDVVITGTPAAVKHVTKLVGEFYRSKGCDPTTLPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAVVEDGAWGGELRQLLKVAGCEHHLERFRKDQLDGEVLLMMEREDFERMGVTEVSLTRRVVRALGSRGGRTNFLGVAAGDGVVGRRYCEIRILNGLKVGGGGAANDDE-DSDGLDPDHPDTCKICMDALVDILFLPCAHQCTCSRCGGAFAGKACILCRAEVKKVQKVIRVR 4414
A+ ADMSLE RLKKAI+ GN +A+QSIYDEADQTPGA MKKIKKKCQR+LNKKAGE+QKLQQA++PAPV R A +QRPT +MFCPNNIAPQLIGK G T+N+LMK+S+AKIVV+P+PD+SGNDV+ITGTP AVK +LV EFYRSKGC P+ LPP XXXXXXXXXX VVEDGAWGGELRQLL+VAGCEHHLERFR+DQLDGEVLLMM+R DFERMGVTE G+ +IRILN LK GG DSDGLDPDHPDTCKIC+DALVDILFLPCAHQCTCSRCG A+ GK CILCR V KVQ+VI++R
Sbjct: 678 ALLADMSLEVRLKKAIDSGNTLAVQSIYDEADQTPGASMKKIKKKCQRYLNKKAGEDQKLQQASQPAPV-RGAXXXXXXXXXXXAQRPTQHDMFCPNNIAPQLIGKQGQTVNKLMKDSRAKIVVKPYPDRSGNDVIITGTPNAVKTAKRLVEEFYRSKGCQPSALPPPSSAVAARKAEGARARPAQPVTGGPXXXXXXXXXX---------VVVEDGAWGGELRQLLRVAGCEHHLERFREDQLDGEVLLMMDRRDFERMGVTE-------------------------GE--------QIRILNALKGSGGXXXXXXXXDSDGLDPDHPDTCKICLDALVDILFLPCAHQCTCSRCGSAYEGKPCILCRRVVDKVQRVIKLR 1017
BLAST of mRNA_C-linearis_contig73.14940.1 vs. uniprot
Match: A0A6H5J8V2_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8V2_9PHAE) HSP 1 Score: 327 bits (837), Expect = 3.920e-89 Identity = 219/447 (48.99%), Postives = 264/447 (59.06%), Query Frame = 2
Query: 3269 AIAADMSLEDRLKKAIERGNAIAIQSIYDEADQTPGAGMKKIKKKCQRWLNKKAGE----EQKLQQATKPAPV----LRAAGAAGAAAT-----ALASQRPTHFEMFCPNNIAPQLIGKMGMTINRLMKESKAKIVVRPHPDKSGNDVVITGTPAAVKHVTKLVGEFYRSKGCDPTTLPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------------------------PAVVEDGAW----------GGELRQLLKVAGCEHHLERFRKDQLDGEVLLMMEREDFERMGVTEVSLTRRVVRALGSRGGRTNFLGVAAGDGVVGRRY-CEIRILNGLKVGGGGAA----------NDDEDSDGLDPDHPDTCKICMDALVDILFLPCAHQCTCSRCGGAFAGKACILCRAEVKKVQKVIRVR 4414
++ DMSLE RL+KAIERGNA+A+Q+I+DEADQTPGA MKK+KKKC++WLNKK GE +Q+L QA +P P LR AG T A A+QRPT +EMFCPN IA Q+IG+ G T+NRLMKES+A+IV++P+ DK+G+DVVITG+P A +LV +FYRSKG +PT LPPXXXXXXXXXXXXX P V G GGEL QLL+ A CEHHLERF +DQLDGEVLL MER DF+RMGVTE +R ++ AL G GRR R++ ++ GG A ++D DSDGLDPDHPDTCKICMDALV ILFLPCAHQCTC RCG F GK CI+CR +V + Q VIR+R
Sbjct: 630 SLVVDMSLEVRLRKAIERGNALAVQAIHDEADQTPGADMKKMKKKCKKWLNKKEGEMREEQQRLLQANQPPPNPALGLRQAGPGFGVPTPPVAAAAAAQRPTQYEMFCPNVIAGQVIGRGGQTVNRLMKESRARIVLKPYADKTGHDVVITGSPQATAR--RLVEDFYRSKGIEPTHLPPXXXXXXXXXXXXXGRPGGVAPRARLPDPMMPTEAMIGHLGRGRTMAVAGPAAAAAAGMRAPSGAIPQGARPVAQPVVYGGGXXXXXXXXVDVSGGELPQLLRAARCEHHLERFLRDQLDGEVLLEMERRDFDRMGVTEAEQSR-ILSALKHAGEGXXXXXXXXXXXXXGRRENLAQRVVTVVRGTSGGVATPFEVEDDDVDEDXDSDGLDPDHPDTCKICMDALVGILFLPCAHQCTCVRCGSGFVGKPCIICRQKVTRAQPVIRLR 1073
BLAST of mRNA_C-linearis_contig73.14940.1 vs. uniprot
Match: A0A6H5JKP4_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKP4_9PHAE) HSP 1 Score: 266 bits (681), Expect = 9.220e-76 Identity = 179/359 (49.86%), Postives = 198/359 (55.15%), Query Frame = 2
Query: 3530 PTHFEMFCPNNIAPQLIGKMGMTINRLMKESKAKIVVRPHPDKSGNDVVITGTPAAVK--------------------------------------------------------------HVTKLVGE-FYRSKGCDPTTLPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAVVEDGAWGGELRQLLKVAGCEHHLERFRKDQLDGEVLLMMEREDFERMGVTEVSLTRRVVRALGSRGGRTNFLGVAAGDGVVGRRYCEIRILNGLKVGGGGAAND-DEDSDGLDPDHPDTCKICMDALVDILFLPCAHQCTCSRCGGAFAGKACILCRAEVKKVQKVIRVR 4414
P+ + NIAPQLIGK G T+++LMKES+AKIVV+P+PD+SGNDVVITGTP AVK VT V E FYRSKGC PT LPP XXXXXXXXXXXX VVEDGAWGGELRQLL+VAGCEHHLERFR+DQLDGEVLLMM+R DFERMGVT VG +IRILN LK G G +D DEDSDGLDPDHPDTCKIC+DALVDILFLPCAH CTCSRCG A+ GK CILCR V KVQ+VI++R
Sbjct: 42 PSPSPLLRAQNIAPQLIGKQGQTVSKLMKESRAKIVVKPYPDRSGNDVVITGTPNAVKVSKSRVLGSTLDCCRGCVRVRCLAIPLYFQAVVVGRCDGVGAGCFVVVVNALSLRHPLQCTRRVTMRVEEEFYRSKGCQPTALPPPSSAVAAARKAEGARARPAQPVTGXXXXXXXXXXXX--------VVVEDGAWGGELRQLLRVAGCEHHLERFREDQLDGEVLLMMDRRDFERMGVT------------------------------VGE---QIRILNALKGSGAGGVDDSDEDSDGLDPDHPDTCKICLDALVDILFLPCAHHCTCSRCGSAYEGKPCILCRRVVDKVQRVIKLR 359
BLAST of mRNA_C-linearis_contig73.14940.1 vs. uniprot
Match: D7FX18_ECTSI (KH domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX18_ECTSI) HSP 1 Score: 249 bits (637), Expect = 1.110e-64 Identity = 187/408 (45.83%), Postives = 228/408 (55.88%), Query Frame = 2
Query: 3269 AIAADMSLEDRLKKAIERGNAIAIQSIYDEADQTPGAGMKKIKKKCQRWLNKKAGE----EQKLQQATKPAPV----LRAAGAA-GAAATALASQRPTHFEMFCPNNIAPQLIGKMGMTINRLMKESKAKIVVRPHPDKSGNDVVITGTPAAVKHVTKLVGEFYRSKGCDPTTLPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------PAV----------VEDGA------------WGG---------------ELRQLLKVAGCEHHLERFRKDQLDGEVLLMMEREDFERMGVTEVSLTRRVVRALGSRGG----RTNFLGVAAGDGVVGRRYCEIRILNGLKVGGGGAANDDE--------DSDGLDPDHPDTCKICMDALVDI 4294
++ DMSLE RLKKAIERGNA+A+Q+I+DEADQTPGA MKKIKKKC++WLNKK GE +Q+L QA +P P LR AG G +A+QRPT +EMFCPN IA Q+IG+ G T+NRLMKES+A+IV++ + DK+G+DVVITG+P AV +LV +FYRSKG +PT L P XXXXXXXXXXXXX PA + GA +GG EL QLL+ A CEHHLERF++DQLDGEVLL MER +F+RMGVTE R++ AL G R R+ ++ G A E SDGLDPDHPDTCKICMDALV +
Sbjct: 488 SLVVDMSLEVRLKKAIERGNALAVQAIHDEADQTPGADMKKIKKKCKKWLNKKEGEMREEQQRLLQANQPPPNPALGLRQAGPGFGVPTPPMAAQRPTEYEMFCPNVIAGQVIGRGGQTVNRLMKESRARIVLKTYADKTGHDVVITGSPQAVLTGRRLVEDFYRSKGIEPTLLQPPSXXXXXXXXXXXXXGRPGGVAPRARLPDPMMPTEAMIGHLGRGRTMAGAGPAAAVGMRAPSGAIPQGARPVAQXXXXXXMFGGXXXXXXXXXVDVSGVELPQLLRAARCEHHLERFKRDQLDGEVLLEMERREFDRMGVTEAE-QGRIMSALKHAGDGXXXXXXXXXXXXXXXXXXRENSAQRVAAVVRGASGVMATPVEVEDXXXXXXSDGLDPDHPDTCKICMDALVGL 894
BLAST of mRNA_C-linearis_contig73.14940.1 vs. uniprot
Match: A0A6H5JGK6_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGK6_9PHAE) HSP 1 Score: 200 bits (509), Expect = 3.730e-48 Identity = 125/273 (45.79%), Postives = 143/273 (52.38%), Query Frame = 2
Query: 290 GDYLEPPDLSTPCCRCGGGLPLCRRCA------AIGAGIGGAGTNGAGGAEAINLEEAIVCTACARFVCSDPGCSTRCSDKECETLFCSSCRGSLSECSGCLMLHCESTGDPEKDCLLPCEGKPGCRAEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAFTEVKGFCEGCNADRCLMXXXXMRPCDKCGHAVSLERLRKSMTPMTAFIEKWSTSGLTRERKEQRQQ---------RPSELPPLPPRSLAMRAEVARRWAAFIA 1063
GDYL PPDLS C CGG LPLC RCA AIG GG G +G G E I EA+ C CAR VCS P CSTRCS+ CET+FCSSCR SLSECSGCLM HC GDP+ DCLLPC+G P CR EGCNADRCL+ RPCD CGH VS +R+R+ M T FIEKWS L + + + + PSE+ PPRS+A+RAEVA RW + A
Sbjct: 58 GDYLGPPDLSNACSWCGGRLPLCDRCARAVSFSAIGE-TGGGGGDGVSGDEMI-AAEAVCCCGCARLVCSGPECSTRCSNTSCETVFCSSCRLSLSECSGCLMPHCRRAGDPDTDCLLPCQGHPECR--------------------------------------------------EGCNADRCLLCVMRSRPCDMCGHPVSADRVREHMASTTGFIEKWSKFCLGKNSRRREESVAAVAGASAGPSEVHH-PPRSIALRAEVAHRWMSVAA 277
BLAST of mRNA_C-linearis_contig73.14940.1 vs. uniprot
Match: D7FX20_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX20_ECTSI) HSP 1 Score: 124 bits (311), Expect = 1.030e-27 Identity = 66/113 (58.41%), Postives = 76/113 (67.26%), Query Frame = 2
Query: 257 TIPCAGCAGTAGDYLEPPDLSTPCCRCGGGLPLCRRCAAIGAGIGGAGTNGAGGAEAINLEE-----AIVCTACARFVCSDPGCSTRCSDKECETLFCSSCRGSLSECSGCLM 580
TI CAGC G AGDYL PPDLS C CGG LPLC CA G +G GG + ++++E A+ C ACAR VCS P CSTRCS+ CE++FCSSCR SLSECSGCLM
Sbjct: 47 TIRCAGCGGAAGDYLGPPDLSNACSWCGGRLPLCDPCARA-VSFSAIGESGGGGGDGVSVDEMIAAEAVCCCACARLVCSGPECSTRCSNMSCESVFCSSCRLSLSECSGCLM 158
BLAST of mRNA_C-linearis_contig73.14940.1 vs. uniprot
Match: A0A6H5JGL0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGL0_9PHAE) HSP 1 Score: 73.2 bits (178), Expect = 1.300e-11 Identity = 44/90 (48.89%), Postives = 52/90 (57.78%), Query Frame = 2
Query: 380 AGIGGAGTNGAGGAEAINLEEAIVCTACARFVCSDPGCSTRCSDKECETLFCSSCRGSLSECSGCLMLHCESTGDPEKDCLLPCEGKPGC 649
AG GG T A +++ EA C+ C PG + C+D CET C C G L ECS CLM CE TGDPE DCLLPC+G+PGC
Sbjct: 14 AGNGGGHTRRAALGTSLSTSEA--CSMCGSRKTYTPG--SVCAD--CETYACYKCEGPLPECSSCLMSFCEGTGDPETDCLLPCQGQPGC 97 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig73.14940.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig73.14940.1 >prot_C-linearis_contig73.14940.1 ID=prot_C-linearis_contig73.14940.1|Name=mRNA_C-linearis_contig73.14940.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=1415bp MDHNQVLVRPSPPGLAIDPTAGTGTDTIPCAGCAGTAGDYLEPPDLSTPCback to top mRNA from alignment at C-linearis_contig73:190801..206134- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig73.14940.1 ID=mRNA_C-linearis_contig73.14940.1|Name=mRNA_C-linearis_contig73.14940.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=15334bp|location=Sequence derived from alignment at C-linearis_contig73:190801..206134- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig73:190801..206134- >mRNA_C-linearis_contig73.14940.1 ID=mRNA_C-linearis_contig73.14940.1|Name=mRNA_C-linearis_contig73.14940.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=8490bp|location=Sequence derived from alignment at C-linearis_contig73:190801..206134- (Chordaria linearis ClinC8C monoicous)back to top |