mRNA_C-linearis_contig73.14930.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig73.14930.1
Unique NamemRNA_C-linearis_contig73.14930.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig73.14930.1 vs. uniprot
Match: D8LFV5_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFV5_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 2.770e-33
Identity = 58/99 (58.59%), Postives = 74/99 (74.75%), Query Frame = 1
Query:    4 ISSGYFAGLFISALMLGRICSVYFWGLLTKHYGQRPAIFVSLWSTAAFAVAFGFSTTTLFWAFTFRFLIGLFHGLQPLWPTLVSEICGEEHEVVGMGVL 300
            +SSGYFAGL  S+ M GR+ S YFWG++    G+RP + +SL ST   AVAFGFSTT L WA   RFL+GL +G+  ++PTLVSEICG+EHEVVG+G +
Sbjct:    1 MSSGYFAGLLSSSFMFGRVISAYFWGIVADRCGRRPVVLLSLASTGGLAVAFGFSTTFL-WALACRFLLGLLNGMTVIFPTLVSEICGKEHEVVGLGAV 98          
BLAST of mRNA_C-linearis_contig73.14930.1 vs. uniprot
Match: A0A6H5JZQ3_9PHAE (MFS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ3_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 8.020e-30
Identity = 57/99 (57.58%), Postives = 75/99 (75.76%), Query Frame = 1
Query:    4 ISSGYFAGLFISALMLGRICSVYFWGLLTKHYGQRPAIFVSLWSTAAFAVAFGFSTTTLFWAFTFRFLIGLFHGLQPLWPTLVSEICGEEHEVVGMGVL 300
            +SSGYFAGL  S+ M+GR+ S YFWG++    G+RP + +SL ST   AVAFGFSTT L WA   RFL+GL +G+  ++P+LVSEICG+EHEVVG+G +
Sbjct:    1 MSSGYFAGLLSSSFMVGRVISAYFWGIIADRCGRRPVVLLSLASTGGLAVAFGFSTTFL-WALACRFLLGLLNGMTVIFPSLVSEICGKEHEVVGLGAV 98          
BLAST of mRNA_C-linearis_contig73.14930.1 vs. uniprot
Match: A0A6H5JCE3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCE3_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 8.750e-17
Identity = 40/73 (54.79%), Postives = 53/73 (72.60%), Query Frame = 1
Query:   82 LLTKHYGQRPAIFVSLWSTAAFAVAFGFSTTTLFWAFTFRFLIGLFHGLQPLWPTLVSEICGEEHEVVGMGVL 300
            ++T   G+RP +  SL ST   AVAFGFSTT L W+   RFL+GL + +  ++PTLVSEICG+EHEVVG+G +
Sbjct:    1 MITDRCGRRPVVLFSLASTGVLAVAFGFSTTFL-WSLACRFLLGLLNRMAVIFPTLVSEICGKEHEVVGLGAM 72          
BLAST of mRNA_C-linearis_contig73.14930.1 vs. uniprot
Match: D8LRH7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRH7_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 2.050e-15
Identity = 39/97 (40.21%), Postives = 57/97 (58.76%), Query Frame = 1
Query:   10 SGYFAGLFISALMLGRICSVYFWGLLTKHYGQRPAIFVSLWSTAAFAVAFGFSTTTLFWAFTFRFLIGLFHGLQPLWPTLVSEICGEEHEVVGMGVL 300
            +GY+AG   SA M+GR             YG+ P +++ L S    ++AFG ST   +WA T RFL+G  +GL  +   ++SEICG++HE VGMG +
Sbjct:   47 AGYYAGYLASAFMVGRFXXXXXXXXXADRYGRLPVVYIGLSSIGVLSLAFGLSTA-FWWALTCRFLLGAMNGLIAISKCMISEICGKQHETVGMGYI 142          
BLAST of mRNA_C-linearis_contig73.14930.1 vs. uniprot
Match: A0A6H5L4Q8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Q8_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 5.040e-15
Identity = 39/95 (41.05%), Postives = 56/95 (58.95%), Query Frame = 1
Query:   10 SGYFAGLFISALMLGRICSVYFWGLLTKHYGQRPAIFVSLWSTAAFAVAFGFSTTTLFWAFTFRFLIGLFHGLQPLWPTLVSEICGEEHEVVGMG 294
            +GY+AG   SA M+GR             YG+ P +++ L S    ++AFG ST   +WA T RFL+G  +GL  +   ++SEICG++HE VGMG
Sbjct:   79 AGYYAGYLASAFMVGRFXXXXXXXXXADRYGRLPVVYIGLSSIGVLSLAFGLSTA-FWWALTCRFLLGAMNGLIAISKCMISEICGKQHEKVGMG 172          
BLAST of mRNA_C-linearis_contig73.14930.1 vs. uniprot
Match: A0A6H5KX19_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX19_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 5.230e-15
Identity = 38/95 (40.00%), Postives = 56/95 (58.95%), Query Frame = 1
Query:   10 SGYFAGLFISALMLGRICSVYFWGLLTKHYGQRPAIFVSLWSTAAFAVAFGFSTTTLFWAFTFRFLIGLFHGLQPLWPTLVSEICGEEHEVVGMG 294
            +GY+AG   SA M+GR  +          YG+ P +++ L S    ++AFG ST   +WA T RFL+G  + L  +   ++SEICG++HE VGMG
Sbjct:  115 AGYYAGCLASAFMVGRFATSXXXXXXADRYGRLPVVYIGLSSIGVLSLAFGLSTA-FWWALTCRFLLGAMNALMGISKCMISEICGKQHETVGMG 208          
BLAST of mRNA_C-linearis_contig73.14930.1 vs. uniprot
Match: A0A7N0TLV5_KALFE (MFS domain-containing protein n=3 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0TLV5_KALFE)

HSP 1 Score: 61.6 bits (148), Expect = 1.230e-9
Identity = 33/95 (34.74%), Postives = 52/95 (54.74%), Query Frame = 1
Query:   13 GYFAGLFISALMLGRICSVYFWGLLTKHYGQRPAIFVSLWSTAAFAVAFGFSTTTLFWAFTFRFLIGLFHGLQPLWPTLVSEICGEEHEVVGMGV 297
            GY+AG   +ALMLGR+ +  FWG++   YG++P I   + S       FG S   ++ A   RFL+GLF+GL         E+  +E++ + + V
Sbjct:   73 GYYAGYVGAALMLGRVFTSVFWGVIADRYGRKPVIIFGIVSVIILNTLFGLSIN-IWMALATRFLLGLFNGLLGPIKAYAVELLRKEYQAIRLSV 166          
BLAST of mRNA_C-linearis_contig73.14930.1 vs. uniprot
Match: A0A7N0U448_KALFE (Uncharacterized protein n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0U448_KALFE)

HSP 1 Score: 62.0 bits (149), Expect = 4.440e-9
Identity = 34/96 (35.42%), Postives = 52/96 (54.17%), Query Frame = 1
Query:   13 GYFAGLFISALMLGRICSVYFWGLLTKHYGQRPAIFVSLWSTAAFAVAFGFSTTTLFWAFTFRFLIGLFHGLQPLWPTLVSEICGEEHEVVGMGVL 300
            GY+AG   +AL+LGR+ +  FWG++   YG++P I   + S   F   F  ST         RFL+GL +GL        +E+  EEH+ +G+ V+
Sbjct:   76 GYYAGYVGTALILGRVLTSIFWGVIADRYGRKPVIVFGIVSMIIFNTLFVVST---------RFLLGLLNGLIGPVKAYATEMFREEHQAMGLSVI 162          
BLAST of mRNA_C-linearis_contig73.14930.1 vs. uniprot
Match: A0A7N0U4P5_KALFE (MFS domain-containing protein n=4 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0U4P5_KALFE)

HSP 1 Score: 58.9 bits (141), Expect = 2.880e-8
Identity = 33/96 (34.38%), Postives = 52/96 (54.17%), Query Frame = 1
Query:   13 GYFAGLFISALMLGRICSVYFWGLLTKHYGQRPAIFVSLWSTAAFAVAFGFSTTTLFWAFTFRFLIGLFHGLQPLWPTLVSEICGEEHEVVGMGVL 300
            G +AG   +ALMLGR+ +  FWG++   YG++P I   + S       FG S   ++ A   RFL+GLF GL         E+  +E++ +G+ V+
Sbjct:  132 GCYAGYVGAALMLGRVFTSVFWGVIADLYGRKPVIIFGIVSVIILNTLFGLSIN-IWMALATRFLLGLFKGLLGPIKAYAVELSRKEYQAMGLSVV 226          
BLAST of mRNA_C-linearis_contig73.14930.1 vs. uniprot
Match: A0A811RFS5_9POAL (Hypothetical protein n=1 Tax=Miscanthus lutarioriparius TaxID=422564 RepID=A0A811RFS5_9POAL)

HSP 1 Score: 59.3 bits (142), Expect = 3.780e-8
Identity = 33/97 (34.02%), Postives = 50/97 (51.55%), Query Frame = 1
Query:   13 GYFAGLFISALMLGRICSVYFWGLLTKHYGQRPAIFVSLWSTAAFAVAFGFSTTTLFW-AFTFRFLIGLFHGLQPLWPTLVSEICGEEHEVVGMGVL 300
            G +AG   ++ MLGR  +   WG+     G++P + V + S   F   F  ST+  +W A   RFL+G  +GL         EICG EHE +G+ ++
Sbjct:   15 GLYAGFVGASFMLGRCLTSTAWGIAADRIGRKPVVMVGILSVVIFNTLFELSTS--YWMAIATRFLLGALNGLLGPIKAYAIEICGPEHEALGLSLV 109          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig73.14930.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D8LFV5_ECTSI2.770e-3358.59MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JZQ3_9PHAE8.020e-3057.58MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JCE3_9PHAE8.750e-1754.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRH7_ECTSI2.050e-1540.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4Q8_9PHAE5.040e-1541.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KX19_9PHAE5.230e-1540.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7N0TLV5_KALFE1.230e-934.74MFS domain-containing protein n=3 Tax=Kalanchoe fe... [more]
A0A7N0U448_KALFE4.440e-935.42Uncharacterized protein n=1 Tax=Kalanchoe fedtsche... [more]
A0A7N0U4P5_KALFE2.880e-834.38MFS domain-containing protein n=4 Tax=Kalanchoe fe... [more]
A0A811RFS5_9POAL3.780e-834.02Hypothetical protein n=1 Tax=Miscanthus lutariorip... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig73contigC-linearis_contig73:31277..31896 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score118.6
Seed ortholog evalue1.6e-24
Seed eggNOG ortholog2880.D8LFV5
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.major facilitator superfamily
EggNOG OGsKOG2615@1,KOG2615@2759
Ec32 ortholog descriptionMajor facilitator superfamily
Ec32 orthologEc-05_005380.1
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size300
Cds size300
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930397.515268-CDS-C-linearis_contig73:31276..314761622930397.515268-CDS-C-linearis_contig73:31276..31476Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 31277..31476 +
1690881048.9832866-CDS-C-linearis_contig73:31276..314761690881048.9832866-CDS-C-linearis_contig73:31276..31476Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 31277..31476 +
1622930397.5707128-CDS-C-linearis_contig73:31796..318961622930397.5707128-CDS-C-linearis_contig73:31796..31896Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 31797..31896 +
1690881048.999155-CDS-C-linearis_contig73:31796..318961690881048.999155-CDS-C-linearis_contig73:31796..31896Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 31797..31896 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig73.14930.1prot_C-linearis_contig73.14930.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig73 31277..31896 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig73.14930.1

>prot_C-linearis_contig73.14930.1 ID=prot_C-linearis_contig73.14930.1|Name=mRNA_C-linearis_contig73.14930.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=100bp
MISSGYFAGLFISALMLGRICSVYFWGLLTKHYGQRPAIFVSLWSTAAFA
VAFGFSTTTLFWAFTFRFLIGLFHGLQPLWPTLVSEICGEEHEVVGMGVL
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mRNA from alignment at C-linearis_contig73:31277..31896+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig73.14930.1 ID=mRNA_C-linearis_contig73.14930.1|Name=mRNA_C-linearis_contig73.14930.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=620bp|location=Sequence derived from alignment at C-linearis_contig73:31277..31896+ (Chordaria linearis ClinC8C monoicous)
ATGATTTCTTCAGGTTATTTCGCCGGTTTGTTTATCTCGGCCTTGATGCT CGGCCGCATTTGTTCAGTGTACTTCTGGGGGCTACTCACTAAGCACTACG GCCAACGGCCTGCTATCTTTGTATCCCTCTGGTCGACGGCGGCTTTTGCT GTTGCTTTCGGCTTTTCGACGACGACGCTCTTTTGGGCATTTACCTTCAG GTACGAGTTAGACATGCAGTGCTCAACAAAGCAGTAACGTACGCAGGAAA CAAGCATTGATCAGAACACGGTGGTGCTGGTGGCATCATCGCGCTGAATA TGATCGATTGTGACCTCGAGTTTGTGCTCGAGGGCCTTGTTCTCGCTCTT TGTTTCGATCAATCCCAGAGTAGAAAGTATACGCCCAACCACACGCACAC ATGAACGAAGGGGCTCTCATGCTGAAAGTGCTGGCTGTCTTGAAATATCC GACCCTGTTACTCTCTGGTTGAAAAATACAAGATGTGCCTCTTGGTTGCC CTCACCCACCCTACCCCCAGGTTCTTGATAGGATTGTTCCACGGCCTTCA ACCGCTGTGGCCAACCCTCGTCTCAGAGATCTGTGGGGAGGAGCACGAGG TCGTCGGCATGGGCGTCTTG
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Coding sequence (CDS) from alignment at C-linearis_contig73:31277..31896+

>mRNA_C-linearis_contig73.14930.1 ID=mRNA_C-linearis_contig73.14930.1|Name=mRNA_C-linearis_contig73.14930.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at C-linearis_contig73:31277..31896+ (Chordaria linearis ClinC8C monoicous)
ATGATTTCTTCAGGTTATTTCGCCGGTTTGTTTATCTCGGCCTTGATGCT
CGGCCGCATTTGTTCAGTGTACTTCTGGGGGCTACTCACTAAGCACTACG
GCCAACGGCCTGCTATCTTTGTATCCCTCTGGTCGACGGCGGCTTTTGCT
GTTGCTTTCGGCTTTTCGACGACGACGCTCTTTTGGGCATTTACCTTCAG
ATGATTTCTTCAGGTTATTTCGCCGGTTTGTTTATCTCGGCCTTGATGCT
CGGCCGCATTTGTTCAGTGTACTTCTGGGGGCTACTCACTAAGCACTACG
GCCAACGGCCTGCTATCTTTGTATCCCTCTGGTCGACGGCGGCTTTTGCT
GTTGCTTTCGGCTTTTCGACGACGACGCTCTTTTGGGCATTTACCTTCAG
GTTCTTGATAGGATTGTTCCACGGCCTTCAACCGCTGTGGCCAACCCTCG
TCTCAGAGATCTGTGGGGAGGAGCACGAGGTCGTCGGCATGGGCGTCTTG
GTTCTTGATAGGATTGTTCCACGGCCTTCAACCGCTGTGGCCAACCCTCG
TCTCAGAGATCTGTGGGGAGGAGCACGAGGTCGTCGGCATGGGCGTCTTG
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