mRNA_C-linearis_contig72.14869.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig72.14869.1
Unique NamemRNA_C-linearis_contig72.14869.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig72.14869.1 vs. uniprot
Match: A0A6H5JP50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP50_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 1.460e-9
Identity = 44/98 (44.90%), Postives = 55/98 (56.12%), Query Frame = 3 
Query:   99 KSKSARLDDGQAAAGSSDSGASXXLSRKVXXXXXKSKTISR---SGAP*SKAHLDRTLSRYLLLRHFADQFDSGDSQESFLRLQKFGVSNGTSFAEYL 383
            KS+++R     A   SSDSG+   L RK        + + R    GA   +A         LLLR  ++QFD GD QESFLRLQ+FGVSNGT FA+YL
Sbjct:   81 KSRTSRPSSDTAGGASSDSGSERSLPRKTSSGRISRQQVKRRLDDGATGPEAFT-------LLLRLLSEQFDVGDRQESFLRLQEFGVSNGTLFADYL 171
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BLAST of mRNA_C-linearis_contig72.14869.1 vs. uniprot
Match: A0A6H5JE42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE42_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 7.760e-8
Identity = 27/37 (72.97%), Postives = 32/37 (86.49%), Query Frame = 3 
Query:  273 LLLRHFADQFDSGDSQESFLRLQKFGVSNGTSFAEYL 383
            LLLRH A+QFD GD QES LRLQ+FGV++GT FA+YL
Sbjct:  134 LLLRHLAEQFDVGDRQESVLRLQQFGVADGTPFADYL 170
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BLAST of mRNA_C-linearis_contig72.14869.1 vs. uniprot
Match: A0A6H5K3M2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3M2_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 3.920e-7
Identity = 41/97 (42.27%), Postives = 51/97 (52.58%), Query Frame = 3 
Query:   99 KSKSARLDDGQAAAGSSDSGASXXLSRKVXXXXXKSKTISR---SGAP*SKAHLDRTLSRYLLLRHFADQFDSGDSQESFLRLQKFGVSNGTSFAEY 380
            KS+++R     A   SSDSG+   L RK        + + R    GA   +A         LLLR   +QFD GD QESFLRLQ+FGVSNGT F  +
Sbjct:  145 KSRTSRPSSDTAGGASSDSGSERSLLRKTSSGRVSRQQVKRRLDDGATGPEAFT-------LLLRLLLEQFDVGDRQESFLRLQQFGVSNGTLFVYF 234
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig72.14869.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JP50_9PHAE1.460e-944.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JE42_9PHAE7.760e-872.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3M2_9PHAE3.920e-742.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig72contigC-linearis_contig72:243293..244405 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size384
Cds size384
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930377.6828954-CDS-C-linearis_contig72:243292..2435121622930377.6828954-CDS-C-linearis_contig72:243292..243512Chordaria linearis ClinC8C monoicousCDSC-linearis_contig72 243293..243512 +
1690881039.028063-CDS-C-linearis_contig72:243292..2435121690881039.028063-CDS-C-linearis_contig72:243292..243512Chordaria linearis ClinC8C monoicousCDSC-linearis_contig72 243293..243512 +
1622930377.695541-CDS-C-linearis_contig72:244241..2444051622930377.695541-CDS-C-linearis_contig72:244241..244405Chordaria linearis ClinC8C monoicousCDSC-linearis_contig72 244242..244405 +
1690881039.0375352-CDS-C-linearis_contig72:244241..2444051690881039.0375352-CDS-C-linearis_contig72:244241..244405Chordaria linearis ClinC8C monoicousCDSC-linearis_contig72 244242..244405 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig72.14869.1prot_C-linearis_contig72.14869.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig72 243293..244405 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig72.14869.1

>prot_C-linearis_contig72.14869.1 ID=prot_C-linearis_contig72.14869.1|Name=mRNA_C-linearis_contig72.14869.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=128bp
RGIVSPPRLRAPAACQTTAVRTTARTTGAGAVPRASPRAWTMDRPQLDPR
ILVHPAAFLGRFRGRSPRARPFPGPALPRARLIWTGRFRATYCCAILRIN
LILEIAKSHFCVSKSLVLATVLLSQSI*
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mRNA from alignment at C-linearis_contig72:243293..244405+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig72.14869.1 ID=mRNA_C-linearis_contig72.14869.1|Name=mRNA_C-linearis_contig72.14869.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1113bp|location=Sequence derived from alignment at C-linearis_contig72:243293..244405+ (Chordaria linearis ClinC8C monoicous)
CGCGGGATCGTTTCCCCGCCTCGTCTTCGAGCACCAGCGGCGTGTCAGAC
AACCGCGGTCAGGACTACCGCCAGGACAACCGGAGCCGGGGCCGTTCCAA
GAGCAAGTCCGCGCGCTTGGACGATGGACAGGCCGCAGCTGGATCCTCGG
ATTCTGGTGCATCCGGCAGCCTTTCTCGGAAGGTTTCGGGGTCGAAGTCC
AAGAGCAAGACCATTTCCAGGCGAGTTCCATCTTTACTAGATGTGACTAC
GGGTGACCAATTGGTCGCTCTTTTGCGCAATGTCGGTATTTCTTCGAACA
TTCCGCCCCCCCCGCTGTTTTACCAGCAGATACTGCGTCGGCAGTTCCAC
ACCCTTCTCCCTTTCGTTTTGCGGATGGTAAGTTGAACGATGACCTTTGG
GCACATGTCAAAATTGAGAAATCCGGTCCTGCTACTTATGCAGCCGCCGT
CACCGCGAAATCGGACCCTGTAGATCCAATCTCGGCTCCTATTTCTTTCG
GTGCCCCACCCACCCCGGTTGTACCTGTTCCGGTCAACCGTGTTTCAGTT
TTGCCTGTTGACGATAGGTCTTTGCCTGCTTCGTCGCATTTGGCACACAC
ACTGCAGCATTCTATCGATGTTGTCGATGCCGCCGCCGAAACTGATCGTA
TTGCGAAAGTTCAGCGGTCATACATCACGATGAACCTGAAACACATCGGA
CGAGTCGCTACCATGCCGCTCTCTCCCTCGATGTTGCCAGCTGACGCCTA
TTCTCAGCTCATTCGCTCCGTTAAATCGGCGATGACAGATATTTTGGTAT
ACTGCGACGACACTAGTCCTGGCCTCGATGCCACTGACTACATTCCTGGT
TGGGAGAGACCGCTTGAGAAGAAAATCCTGCCCGCTATCACTCCTGATAA
ACCGTTCACCTCGGACCTCGTTCTGTCCATTGCCGACTATTTCGAGCAGG
TCCGGCGCTCCCTAGAGCAAGGCTCATCTGGACCGGACGCTTTCGCGCTA
CTTACTGCTGCGCCATTTTGCGGATCAATTTGATTCTGGAGATAGCCAAG
AGTCATTTTTGCGTCTCCAAAAGTTTGGTGTTAGCAACGGTACTTCTTTC
GCAGAGTATCTGA
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Coding sequence (CDS) from alignment at C-linearis_contig72:243293..244405+

>mRNA_C-linearis_contig72.14869.1 ID=mRNA_C-linearis_contig72.14869.1|Name=mRNA_C-linearis_contig72.14869.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=768bp|location=Sequence derived from alignment at C-linearis_contig72:243293..244405+ (Chordaria linearis ClinC8C monoicous)
CGCGGGATCGTTTCCCCGCCTCGTCTTCGAGCACCAGCGGCGTGTCAGAC
AACCGCGGTCAGGACTACCGCCAGGACAACCGGAGCCGGGGCCGTTCCAA
GAGCAAGTCCGCGCGCTTGGACGATGGACAGGCCGCAGCTGGATCCTCGG
ATTCTGGTGCATCCGGCAGCCTTTCTCGGAAGGTTTCGGGGTCGAAGTCC
AAGAGCAAGACCATTTCCAGCGCGGGATCGTTTCCCCGCCTCGTCTTCGA
GCACCAGCGGCGTGTCAGACAACCGCGGTCAGGACTACCGCCAGGACAAC
CGGAGCCGGGGCCGTTCCAAGAGCAAGTCCGCGCGCTTGGACGATGGACA
GGCCGCAGCTGGATCCTCGGATTCTGGTGCATCCGGCAGCCTTTCTCGGA
AGGTTTCGGGGTCGAAGTCCAAGAGCAAGACCATTTCCAGGTCCGGCGCT
CCCTAGAGCAAGGCTCATCTGGACCGGACGCTTTCGCGCTACTTACTGCT
GCGCCATTTTGCGGATCAATTTGATTCTGGAGATAGCCAAGAGTCATTTT
TGCGTCTCCAAAAGTTTGGTGTTAGCAACGGTACTTCTTTCGCAGAGTAT
CTGAGTCCGGCGCTCCCTAGAGCAAGGCTCATCTGGACCGGACGCTTTCG
CGCTACTTACTGCTGCGCCATTTTGCGGATCAATTTGATTCTGGAGATAG
CCAAGAGTCATTTTTGCGTCTCCAAAAGTTTGGTGTTAGCAACGGTACTT
CTTTCGCAGAGTATCTGA
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