mRNA_C-linearis_contig72.14868.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig72.14868.1
Unique NamemRNA_C-linearis_contig72.14868.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig72.14868.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig72contigC-linearis_contig72:232344..234264 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size193
Cds size192
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930377.624986-CDS-C-linearis_contig72:232343..2324851622930377.624986-CDS-C-linearis_contig72:232343..232485Chordaria linearis ClinC8C monoicousCDSC-linearis_contig72 232344..232485 +
1690881039.0075808-CDS-C-linearis_contig72:232343..2324851690881039.0075808-CDS-C-linearis_contig72:232343..232485Chordaria linearis ClinC8C monoicousCDSC-linearis_contig72 232344..232485 +
1622930377.6417406-CDS-C-linearis_contig72:234213..2342631622930377.6417406-CDS-C-linearis_contig72:234213..234263Chordaria linearis ClinC8C monoicousCDSC-linearis_contig72 234214..234263 +
1690881039.0182512-CDS-C-linearis_contig72:234213..2342631690881039.0182512-CDS-C-linearis_contig72:234213..234263Chordaria linearis ClinC8C monoicousCDSC-linearis_contig72 234214..234263 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig72.14868.1prot_C-linearis_contig72.14868.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig72 232344..234263 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig72.14868.1

>prot_C-linearis_contig72.14868.1 ID=prot_C-linearis_contig72.14868.1|Name=mRNA_C-linearis_contig72.14868.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=64bp
PSPCGRGRHGHGRGRHSSADSGAEPGAASGAGRGFHGFDRGRSRQQRGLG
RMPRGYQDHAQCRS
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mRNA from alignment at C-linearis_contig72:232344..234264+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig72.14868.1 ID=mRNA_C-linearis_contig72.14868.1|Name=mRNA_C-linearis_contig72.14868.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1921bp|location=Sequence derived from alignment at C-linearis_contig72:232344..234264+ (Chordaria linearis ClinC8C monoicous)
CCCAGCCCCTGCGGTCGCGGCCGCCACGGCCACGGTCGCGGCCGCCACAG
CTCAGCAGATTCTGGCGCGGAGCCAGGCGCAGCTAGCGGCGCAGGACGCG
GATTTCATGGGTTTGATCGGGGCCGCAGTCGGCAACAACGAGGTGAGTCG
ATTTCCCCCCCTTTTTTGTTTAGTCTTCGGCTCCTACGATTGCCTTCATG
ACACGCGGTGCGCCCACACGTAACAACCATGCCGCACGGATGTTTcGGGG
ATCGCATTCCCGTCCCATGGTTGCCCGCGAGTTCATCGAGTTCCATCCAT
TCCCATTCCCATTCACGCACACAACCATGCACAAAAAATTTCGGCACGAT
ACGTACGCACGCGACTATATCCGCCTTTATACGTATACGACCTTCCGACA
TTATATCATATATATACCACCCTGCTGTGTGTATATATATTGCGACAATT
ACATGCTATGAGTATGTATTGCGATACGTATATGTATACGTTTGCGAGAT
ATGCTCTCCGCCGGGCTCACCGCGATATCCGAAATTATGACACAAGTGTA
TACGGAGCGTGTATCATATATAGGTATGGCGATATATATATACTGAAGTA
CACACGATTCGAGCTCTCTGTGGGAGGGTATCTATGTGTTGGGTGCCGGG
CTCGCCCGAGATACACGAAATGCCGACAACGTATGTACTTGTGCATAACA
AATGTATTGCGATATATACAGACACTTTCGATACAGGCGTATATACTTAG
TATATATATAGGGTGCGCGCGGAGCCCACCGCGCCCACGACAGCGCCCGC
CCGCGGGGCAGGCCACCCCACAGGCCGTACGTTCCCCCGCCATATCCCGT
TCCACCTTCGGGCCCACATACGTCCGCTGTGATAGTTTTATATAGAGCAG
GATGTCGAGTTTACACACTTTCGCCACGACACGTAAACGAAATCCCGACG
ACGCTCATCGCGGCCACCGTGTCCGCGGCGGCGTCCGCCCGCCGCCGGCC
GACCGGGCGTTTACACCGATTTTCCACTCTCGCGCCACGTAATGTAGAAA
TTGGACGATGCCCGCCGTGCGGACCGAGCCGGCGGACACCACGACGTACA
CACGATTTACGCCACGGCTGTTTACAGTGCAACCCCGGCACATGCGCTAC
TCTGTGTAGACGAAATTCCGACGGGGCCCGTCGTGTTAACCGTGTCCACG
GCGGCACCTGTACACCCTCGGACGCCACGCAGCGTATCCGATTTACGCCA
TGATCCCCACAACGACATTCCGACTCTCGCGCCACGCAATGTAGACGAAA
TTAGACGATTTCCGAACGCTGTAGGATGTACGAAATTCCGACGAAGCCCG
TCGTGTTAACCGTGTCCACGGCGGCGCCTGTACCCCCTCGGACGCCACGC
AGCGTATCCGAGTTACGCCACGATATCTACGACGACCTTCCGACTCTCGC
GCCACGAAATGTAGACGAAATTGGGCGATGTCCGAACGCTGTAGGATGTA
CGAAATCCCGACGAGGCCAGTCGTGTTAACTGTGCCCACGGCGGCACCCG
CCCACCCTCGGACGCCACGCGGCGTATCCGATGTACGCGACGACATATAT
GACGAAACTCCGGCTCTCGCGCCACGCAATGTAGACGAAATTGGACGATG
CCCGCTGTGCGGACCGAGTCCACAGAGGCGTCCGCCCACCTACATACGCC
GCATACGCCACGATACAAACGATTTCCCGACGTAGCTCGCAGTACTAACC
GACCCCACGGGAAAGCGTATTGGTGGACGAGCGGCCCGGCTGTATCGCAA
TCAGCGACGTTTCGCCGACCCACGCCGTGCTGACTGCGACCCGATATACG
CGCACGATGACCGCCCACAGGTCTTGGCCGCATGCCTCGAGGTTACCAAG
ACCATGCGCAATGCCGGTCTC
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Coding sequence (CDS) from alignment at C-linearis_contig72:232344..234264+

>mRNA_C-linearis_contig72.14868.1 ID=mRNA_C-linearis_contig72.14868.1|Name=mRNA_C-linearis_contig72.14868.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at C-linearis_contig72:232344..234264+ (Chordaria linearis ClinC8C monoicous)
CCCAGCCCCTGCGGTCGCGGCCGCCACGGCCACGGTCGCGGCCGCCACAG
CTCAGCAGATTCTGGCGCGGAGCCAGGCGCAGCTAGCGGCGCAGGACGCG
GATTTCATGGGTTTGATCGGGGCCGCAGTCGGCAACAACGAGCCCAGCCC
CTGCGGTCGCGGCCGCCACGGCCACGGTCGCGGCCGCCACAGCTCAGCAG
ATTCTGGCGCGGAGCCAGGCGCAGCTAGCGGCGCAGGACGCGGATTTCAT
GGGTTTGATCGGGGCCGCAGTCGGCAACAACGAGGTCTTGGCCGCATGCC
TCGAGGTTACCAAGACCATGCGCAATGCCGGTCTGTCTTGGCCGCATGCC
TCGAGGTTACCAAGACCATGCGCAATGCCGGTCT
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