mRNA_C-linearis_contig72.14863.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig72.14863.1
Unique NamemRNA_C-linearis_contig72.14863.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig72.14863.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig72contigC-linearis_contig72:182171..183787 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMORN motif
Ec32 orthologEc-20_000760.1
Exons2
Model size1073
Cds size1071
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930377.5506706-CDS-C-linearis_contig72:182170..1827141622930377.5506706-CDS-C-linearis_contig72:182170..182714Chordaria linearis ClinC8C monoicousCDSC-linearis_contig72 182171..182714 +
1690881038.9814205-CDS-C-linearis_contig72:182170..1827141690881038.9814205-CDS-C-linearis_contig72:182170..182714Chordaria linearis ClinC8C monoicousCDSC-linearis_contig72 182171..182714 +
1622930377.5764115-CDS-C-linearis_contig72:183260..1837871622930377.5764115-CDS-C-linearis_contig72:183260..183787Chordaria linearis ClinC8C monoicousCDSC-linearis_contig72 183261..183787 +
1690881038.9969072-CDS-C-linearis_contig72:183260..1837871690881038.9969072-CDS-C-linearis_contig72:183260..183787Chordaria linearis ClinC8C monoicousCDSC-linearis_contig72 183261..183787 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig72.14863.1prot_C-linearis_contig72.14863.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig72 182171..183787 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig72.14863.1

>prot_C-linearis_contig72.14863.1 ID=prot_C-linearis_contig72.14863.1|Name=mRNA_C-linearis_contig72.14863.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=357bp
CPPGRCVLRTPSRQGESARLMGCKASKEAHVAELRVDDAHARRRRAQTKH
LAGDFDLTEVPPPPLKLGVRQGLVAGDAAASRTPAVTPQAEVGRCAEPRK
TSAAPGTRRPVDNNYSSSDSDAQQTGRASPSVPSCCAQRGLHGLRVTTKK
ASCEDIDEGGAGKNGSEEPEWCRTACGVENAEGTHANLQEQRQQQRQPGH
KPPEEASGAAWPTPPPVLLVLHLFLENNRPPPSKNKSRPPRRVRFPGGLA
YEGQLCRHKSKHDEQEQQQERDQDQDQDQVQGREEEEEQEEEVVPHGWGR
MVFPDGAFYEGAWRGGVVYGKGALHLANGNCYFGSWGRGRKHGLGTYMYA
DGSCHEG
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mRNA from alignment at C-linearis_contig72:182171..183787+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig72.14863.1 ID=mRNA_C-linearis_contig72.14863.1|Name=mRNA_C-linearis_contig72.14863.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1617bp|location=Sequence derived from alignment at C-linearis_contig72:182171..183787+ (Chordaria linearis ClinC8C monoicous)
TGTCCCCCAGGCCGCTGCGTACTGCGCACCCCTTCGAGGCAAGGCGAGAG
TGCGCGACTGATGGGCTGCAAGGCAAGCAAAGAGGCTCATGTTGCAGAGC
TTCGGGTGGACGACGCTCACGCCCGGCGACGGCGGGCCCAGACGAAGCAC
CTCGCTGGCGACTTCGATCTTACCGAGGTTCCACCACCGCCTCTGAAGCT
TGGAGTGCGTCAAGGTCTCGTCGCCGGTGATGCTGCTGCCTCAAGAACGC
CAGCGGTCACACCACAGGCGGAGGTGGGTCGCTGTGCAGAGCCACGGAAG
ACTTCAGCCGCGCCGGGAACTCGGCGTCCAGTAGACAACAACTACAGCAG
TTCGGATTCAGATGCCCAACAAACGGGTCGAGCCAGCCCCAGCGTTCCTT
CGTGTTGTGCACAGCGAGGTTTGCATGGGCTGCGGGTGACAACGAAGAAG
GCTTCATGCGAAGACATTGACGAGGGTGGAGCGGGCAAGAATGGAAGCGA
GGAGCCGGAGTGGTGTCGAACAGCTTGCGGTGTTGAAAATGCAGGTGTGA
ACGGCAACCAGCACGGGAAATTCACCACGACTCTGTGAATGACGGGCTGG
TCTTACAGCTACTCTACAACGCAGTGGGTCGCATGTAGCGCCACTCTGTA
GGTTTCCAGCACTGACCACGAACGTTTTGATTGAGTGACCTTCACGAGCG
TTGGGGTCGTTTCTTGCCCGTCCCACTGCTGTTACTGGTGACAATCGCAT
GGGAAATCACGAAGCATATACGTATAGCTGGGGAACATGACATATTTCGT
CTGAAAACAAGCCGCTGTGACGCTGTTTCGGAATGTCAATGTTGTTCCGA
TGTGTGCCAGACACAGAGATGTACTATACACGCCAGCATCACAATCACGC
TGGACTCTGTTTCTTTCGATGTACGTAACTGTTTTTTTTGCGATGCCCCC
GGGACTGCTGTGCACATTCTCCGAATTTTCGTCTTAGGGGAAAAAAATAG
GTTAAACGTTCCCAGTACCAACTCGCTCCCGCTTTCTGAGTTTCGACGTT
TCGTGCCCAACATCGCTATGCTTTCCCTCGTAAACAACAGAAGGCACCCA
CGCCAACCTTCAAGAGCAGCGGCAGCAGCAGCGGCAGCCAGGGCACAAAC
CGCCGGAGGAAGCCAGCGGCGCCGCTTGGCCCACGCCCCCGCCGGTTCTC
CTCGTGCTCCACCTGTTCCTCGAGAACAACCGTCCGCCGCCGAGCAAAAA
CAAATCGCGCCCGCCTCGCCGCGTTCGCTTCCCCGGTGGCCTGGCCTACG
AGGGTCAGCTTTGCCGCCACAAATCAAAACACGACGAACAAGAACAACAA
CAAGAACGAGATCAAGATCAAGATCAAGATCAAGTTCAAGGCCGAGAGGA
GGAGGAGGAGCAGGAGGAGGAGGTGGTGCCGCACGGCTGGGGGCGCATGG
TGTTCCCGGACGGCGCCTTCTACGAGGGCGCCTGGCGCGGCGGCGTCGTG
TACGGGAAAGGCGCCCTCCACCTCGCCAACGGCAACTGCTACTTCGGCTC
CTGGGGGCGCGGCCGCAAGCACGGCCTCGGCACCTACATGTACGCGGACG
GGTCCTGCCACGAGGGC
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Coding sequence (CDS) from alignment at C-linearis_contig72:182171..183787+

>mRNA_C-linearis_contig72.14863.1 ID=mRNA_C-linearis_contig72.14863.1|Name=mRNA_C-linearis_contig72.14863.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2142bp|location=Sequence derived from alignment at C-linearis_contig72:182171..183787+ (Chordaria linearis ClinC8C monoicous)
TGTCCCCCAGGCCGCTGCGTACTGCGCACCCCTTCGAGGCAAGGCGAGAG
TGCGCGACTGATGGGCTGCAAGGCAAGCAAAGAGGCTCATGTTGCAGAGC
TTCGGGTGGACGACGCTCACGCCCGGCGACGGCGGGCCCAGACGAAGCAC
CTCGCTGGCGACTTCGATCTTACCGAGGTTCCACCACCGCCTCTGAAGCT
TGGAGTGCGTCAAGGTCTCGTCGCCGGTGATGCTGCTGCCTCAAGAACGC
CAGCGGTCACACCACAGGCGGAGGTGGGTCGCTGTGCAGAGCCACGGAAG
ACTTCAGCCGCGCCGGGAACTCGGCGTCCAGTAGACAACAACTACAGCAG
TTCGGATTCAGATGCCCAACAAACGGGTCGAGCCAGCCCCAGCGTTCCTT
CGTGTTGTGCACAGCGAGGTTTGCATGGGCTGCGGGTGACAACGAAGAAG
GCTTCATGCGAAGACATTGACGAGGGTGGAGCGGGCAAGAATGGAAGCGA
GGAGCCGGAGTGGTGTCGAACAGCTTGCGGTGTTGAAAATGCAGTGTCCC
CCAGGCCGCTGCGTACTGCGCACCCCTTCGAGGCAAGGCGAGAGTGCGCG
ACTGATGGGCTGCAAGGCAAGCAAAGAGGCTCATGTTGCAGAGCTTCGGG
TGGACGACGCTCACGCCCGGCGACGGCGGGCCCAGACGAAGCACCTCGCT
GGCGACTTCGATCTTACCGAGGTTCCACCACCGCCTCTGAAGCTTGGAGT
GCGTCAAGGTCTCGTCGCCGGTGATGCTGCTGCCTCAAGAACGCCAGCGG
TCACACCACAGGCGGAGGTGGGTCGCTGTGCAGAGCCACGGAAGACTTCA
GCCGCGCCGGGAACTCGGCGTCCAGTAGACAACAACTACAGCAGTTCGGA
TTCAGATGCCCAACAAACGGGTCGAGCCAGCCCCAGCGTTCCTTCGTGTT
GTGCACAGCGAGGTTTGCATGGGCTGCGGGTGACAACGAAGAAGGCTTCA
TGCGAAGACATTGACGAGGGTGGAGCGGGCAAGAATGGAAGCGAGGAGCC
GGAGTGGTGTCGAACAGCTTGCGGTGTTGAAAATGCAGAAGGCACCCACG
CCAACCTTCAAGAGCAGCGGCAGCAGCAGCGGCAGCCAGGGCACAAACCG
CCGGAGGAAGCCAGCGGCGCCGCTTGGCCCACGCCCCCGCCGGTTCTCCT
CGTGCTCCACCTGTTCCTCGAGAACAACCGTCCGCCGCCGAGCAAAAACA
AATCGCGCCCGCCTCGCCGCGTTCGCTTCCCCGGTGGCCTGGCCTACGAG
GGTCAGCTTTGCCGCCACAAATCAAAACACGACGAACAAGAACAACAACA
AGAACGAGATCAAGATCAAGATCAAGATCAAGTTCAAGGCCGAGAGGAGG
AGGAGGAGCAGGAGGAGGAGGTGGTGCCGCACGGCTGGGGGCGCATGGTG
TTCCCGGACGGCGCCTTCTACGAGGGCGCCTGGCGCGGCGGCGTCGTGTA
CGGGAAAGGCGCCCTCCACCTCGCCAACGGCAACTGCTACTTCGGCTCCT
GGGGGCGCGGCCGCAAGCACGGCCTCGGCACCTACATGTACGCGGACGGG
TCCTGCCACGAGGGCAAGGCACCCACGCCAACCTTCAAGAGCAGCGGCAG
CAGCAGCGGCAGCCAGGGCACAAACCGCCGGAGGAAGCCAGCGGCGCCGC
TTGGCCCACGCCCCCGCCGGTTCTCCTCGTGCTCCACCTGTTCCTCGAGA
ACAACCGTCCGCCGCCGAGCAAAAACAAATCGCGCCCGCCTCGCCGCGTT
CGCTTCCCCGGTGGCCTGGCCTACGAGGGTCAGCTTTGCCGCCACAAATC
AAAACACGACGAACAAGAACAACAACAAGAACGAGATCAAGATCAAGATC
AAGATCAAGTTCAAGGCCGAGAGGAGGAGGAGGAGCAGGAGGAGGAGGTG
GTGCCGCACGGCTGGGGGCGCATGGTGTTCCCGGACGGCGCCTTCTACGA
GGGCGCCTGGCGCGGCGGCGTCGTGTACGGGAAAGGCGCCCTCCACCTCG
CCAACGGCAACTGCTACTTCGGCTCCTGGGGGCGCGGCCGCAAGCACGGC
CTCGGCACCTACATGTACGCGGACGGGTCCTGCCACGAGGGC
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