mRNA_C-linearis_contig72.14853.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig72.14853.1
Unique NamemRNA_C-linearis_contig72.14853.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig72.14853.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig72contigC-linearis_contig72:101730..102803 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size200
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930377.266638-CDS-C-linearis_contig72:101731..1018951622930377.266638-CDS-C-linearis_contig72:101731..101895Chordaria linearis ClinC8C monoicousCDSC-linearis_contig72 101732..101895 -
1690881038.8343983-CDS-C-linearis_contig72:101731..1018951690881038.8343983-CDS-C-linearis_contig72:101731..101895Chordaria linearis ClinC8C monoicousCDSC-linearis_contig72 101732..101895 -
1622930377.2803829-CDS-C-linearis_contig72:102769..1028031622930377.2803829-CDS-C-linearis_contig72:102769..102803Chordaria linearis ClinC8C monoicousCDSC-linearis_contig72 102770..102803 -
1690881038.8454387-CDS-C-linearis_contig72:102769..1028031690881038.8454387-CDS-C-linearis_contig72:102769..102803Chordaria linearis ClinC8C monoicousCDSC-linearis_contig72 102770..102803 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig72.14853.1prot_C-linearis_contig72.14853.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig72 101732..102803 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig72.14853.1

>prot_C-linearis_contig72.14853.1 ID=prot_C-linearis_contig72.14853.1|Name=mRNA_C-linearis_contig72.14853.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=66bp
GREGGQGTGLAGSEEQLHGKLAAGRRVGGPSRSRSTLTCSQPPTWCGDGT
EGLNERKSKHEEERRG
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mRNA from alignment at C-linearis_contig72:101730..102803-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig72.14853.1 ID=mRNA_C-linearis_contig72.14853.1|Name=mRNA_C-linearis_contig72.14853.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1074bp|location=Sequence derived from alignment at C-linearis_contig72:101730..102803- (Chordaria linearis ClinC8C monoicous)
GGGAGAGAGGGAGGGCAAGGCACGGGGCTGGCAGGTAAGAGATCTGTTGG
AAGCAGCGCCGAAGAATAAGGCGAGCTGGTGAGGTGACTTGGGAATTATG
CAAGGGCGCAAAAGGGTTTTGACAAATGGCAGCTTGCTTGCTCCCTCTCA
AGTTTTTTTCACGGAATCGTGTTTTGGCGTCGGCTGGGTGTGTGCGGTGA
CGAAGTAAGATATTGTCCATTGTTTAGAAAAGAGGGCGGGGATCAACCAG
AGGTGAGACACTGCCAACCCTACCTGAGCAATCAGCGCGAATTGTTTCTC
CTCGACTACACAAACAACCGTTAGACAGGGTCTTGGAGAGGCACCGACCC
TGTCTACAGCAGTACCTACACAGCAGCCGGGTTACCGCCCTCCCAGAAAG
CACGCAGAACAGGCGCGCTCGCGTGGCCCTATGAGATATCTGCTTTCCGA
GCGTGGTCCTTGGCAGCCCTTTCGACCACCAGGCTCTCCGAGCGAGATAA
ATCATGCTGTATATTCATGAATTAGACCACATGTATACATAGTCCATGTC
GCGAAGATGACACACGTGGATGCCCACCGCTAGCCGCAGATACGAAAGCT
TCTCAAAAACAGGGCCCTTGACCCTCTTCTTACAATTCATGTGTGCACCC
TTGAACACATCGTCGCAGGAAACAAAACTGTGTAATCTCTACGCCCTCTA
CAACTTCCCCCTCCAACGGGTCCATGGGAGTCCCCCCTGGCGTGTGTGTA
TGAAGTGGAGGAACCGAAGGCTGTAGAAGCCCACCACTCAAACCTTCCTC
AGAAGCGTCCTTCCAGATTTTTTTTATCCTGGAGAACGTCACTGCTCTAT
TGGCTCAATCTCTCTCTCTCCGTTGCCTCGTACGATCTCTTGCCGCTTTT
TGAATCAGGATCTGAAGAGCAGCTACACGGAAAGCTTGCAGCAGGCCGAC
GGGTGGGTGGACCCAGTCGCTCGCGCTCGACACTGACATGTAGCCAGCCA
CCTACTTGGTGTGGTGATGGGACGGAGGGATTGAACGAGAGGAAGAGCAA
GCACGAAGAGGAGAGGAGAGGAGA
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Coding sequence (CDS) from alignment at C-linearis_contig72:101730..102803-

>mRNA_C-linearis_contig72.14853.1 ID=mRNA_C-linearis_contig72.14853.1|Name=mRNA_C-linearis_contig72.14853.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at C-linearis_contig72:101730..102803- (Chordaria linearis ClinC8C monoicous)
GGGAGAGAGGGAGGGCAAGGCACGGGGCTGGCAGGGGAGAGAGGGAGGGC
AAGGCACGGGGCTGGCAGGATCTGAAGAGCAGCTACACGGAAAGCTTGCA
GCAGGCCGACGGGTGGGTGGACCCAGTCGCTCGCGCTCGACACTGACATG
TAGCCAGCCACCTACTTGGTGTGGTGATGGGACGGAGGGATTGAACGAGA
GGAAGAGCAAGCACGAAGAGGAGAGGAGAGGAGATCTGAAGAGCAGCTAC
ACGGAAAGCTTGCAGCAGGCCGACGGGTGGGTGGACCCAGTCGCTCGCGC
TCGACACTGACATGTAGCCAGCCACCTACTTGGTGTGGTGATGGGACGGA
GGGATTGAACGAGAGGAAGAGCAAGCACGAAGAGGAGAGGAGAGGA
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