mRNA_C-linearis_contig7.14643.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig7.14643.1 vs. uniprot
Match: A0A6H5JCU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCU6_9PHAE) HSP 1 Score: 431 bits (1107), Expect = 4.060e-148 Identity = 227/379 (59.89%), Postives = 245/379 (64.64%), Query Frame = 3
Query: 3 IEWEDSDE-DEPPVKRPRRVKQRKDWSTSAWWIQLQDGDLLDHTTDAAKVFRTRFRVPHPFFLELVKLAKGKKWFSEGGKDAVGRSGIPTELK--------------------------------------------------------------------------------------------------------------VLTALQILGRGNCFDDILQLSLMSKSMAAATFHK*CKHFAQEMFEEHIYLPTGTYQADVMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNGYHE 806
EWEDS E D PPVKR R+VK+R+DWSTSAWW+QLQ+ DLLDHTT+AAKVFRTRFRVPH FFLELVK+A+GKKWFS KDAVGR GIP ELK +LTALQILGRGNCFDDI QLSLMSK MAAATFHK CKHFAQE+FEEHIYLPTG+YQ +VM MYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGR IA+T+GFTG+TNDKTIIRYDAGV+ IKT+ QY TYKLR+ADGTFRERKGCY IVDNGYHE
Sbjct: 48 FEWEDSGEQDGPPVKRSRQVKERRDWSTSAWWLQLQNADLLDHTTEAAKVFRTRFRVPHAFFLELVKMARGKKWFSVREKDAVGRRGIPIELKLSSYRSGLLLLVVNCSDVPSIEPMRWIVVHNFTRWYRRVHSSTAVVAEHGSMGNVPCTVTRTSHRWHRKYCCRRPTAREKRRTLWFRLHTFQTRGHLRGHATTFDAASTKILTALQILGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRAIAITSGFTGATNDKTIIRYDAGVHTIKTDAQYTKRTYKLRRADGTFRERKGCYYIVDNGYHE 426
BLAST of mRNA_C-linearis_contig7.14643.1 vs. uniprot
Match: A0A6H5KSI7_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI7_9PHAE) HSP 1 Score: 379 bits (973), Expect = 5.690e-129 Identity = 184/269 (68.40%), Postives = 214/269 (79.55%), Query Frame = 3
Query: 12 EDSDEDE----PPVKRPRRVKQRKDWSTSAWWIQLQDGDLLDHTTDAAKVFRTRFRVPHPFFLELVKLAKGKKWFSEGGKDAVGRSGIPTELKVLTALQILGRGNCFDDILQLSLMSKSMAAATFHK*CKHFAQEMFEEHIYLPTGTYQADVMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNGYHE 806
EDS+++E P VKR RRV QR+DW TSAWW +LQD DL DHTT AAKVFR RFRVP+PFF ELVKL++ K+WFS G KDA R GIP ELKVL G+GNCFDD+ QLS MS+S+A A FHK C+H A EMF+EHIYLPTGTY +VM ++ +LG TGA GSTDVTHIG MCPFTLGRS+TGKEGFPTIAY+VTVDHAGR +A+T GF G TNDKT IRYD+GVN I+TE QY + YKLRK +GT R R+GC+LIVDNGY+E
Sbjct: 46 EDSEDEEEVVGPKVKRTRRVTQRRDWRTSAWWEKLQDVDLADHTTAAAKVFRERFRVPYPFFQELVKLSRAKRWFSPGEKDAANREGIPLELKVL------GKGNCFDDVEQLSKMSESIAQALFHKFCRHSAAEMFDEHIYLPTGTYLDEVMGIFHQLGCTGACGSTDVTHIGRNMCPFTLGRSFTGKEGFPTIAYEVTVDHAGRALAVTNGFAGGTNDKTTIRYDSGVNKIRTESQYTEREYKLRKVNGTERTRRGCFLIVDNGYYE 308
BLAST of mRNA_C-linearis_contig7.14643.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE) HSP 1 Score: 317 bits (811), Expect = 6.960e-103 Identity = 154/271 (56.83%), Postives = 195/271 (71.96%), Query Frame = 3
Query: 12 EDSDEDEPPVKRPRRVKQRKDWSTSAWWIQLQD------GDLLDHTTDAAKVFRTRFRVPHPFFLELVKLAKGKKWFSEGGKDAVGRSGIPTELKVLTALQILGRGNCFDDILQLSLMSKSMAAATFHK*CKHFAQEMFEEHIYLPTGTYQADVMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNGYHE 806
E+ +ED +KR RRV RKD++ S W IQLQ+ ++D T+ A+ FR FR+P+PFF+ELV L K + WF G +DA GR GIP +LKVL LQIL RGNCF DI +S +S AAATFH+ ++FA+EM+ EHI+LPTG YQ VM YD+LG +GA GSTDVTHI WGMCP+ RSYTGKEG+PT+AYQVTVDH RV+A+T GFTGSTNDK+IIRYD V I+ + Y + + + +ADGT + KGCYL+VDNGYH+
Sbjct: 65 EEEEEDNREIKR-RRVYPRKDYNISGWAIQLQELKDLEVDGIVDPTSRPARRFRESFRLPYPFFVELVALVKQRDWFPTGKQDASGRRGIPVQLKVLACLQILARGNCFADIYHMSFISMQTAAATFHRFTRYFAREMYAEHIFLPTGDYQKKVMTQYDRLGFSGATGSTDVTHIPWGMCPYNQARSYTGKEGYPTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHK 334
BLAST of mRNA_C-linearis_contig7.14643.1 vs. uniprot
Match: A0A6H5KH50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH50_9PHAE) HSP 1 Score: 301 bits (772), Expect = 8.430e-100 Identity = 143/166 (86.14%), Postives = 155/166 (93.37%), Query Frame = 3
Query: 276 KVLTALQILGRGNCFDDILQLSLMSKSMAAATFHK*CKHFAQEMFEEHIYLPTGTYQADVMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKG 773
+VLTALQILGRGNCFDDI QLSLMSK MAAATFHK CKHFAQE+FEEHIYLPTG+YQ +VM MYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGR IA+T+GFTG+TNDKTI+RYDAGV+ IKT+ QY TYKLR+ADGT+RERKG
Sbjct: 3 QVLTALQILGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRAIAITSGFTGATNDKTIMRYDAGVHTIKTDAQYTKRTYKLRRADGTYRERKG 168
BLAST of mRNA_C-linearis_contig7.14643.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE) HSP 1 Score: 306 bits (785), Expect = 8.900e-99 Identity = 147/267 (55.06%), Postives = 186/267 (69.66%), Query Frame = 3
Query: 15 DSDEDEPPVKRPRRVKQRKDWSTSAWW---IQLQDGDLLDHTTDAAKVFRTRFRVPHPFFLELVKLAKGKKWFSEGGKDAVGRSGIPTELKVLTALQILGRGNCFDDILQLSLMSKSMAAATFHK*CKHFAQEMFEEHIYLPTGTYQADVMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNGYHE 806
+ DE VKR RRV RKD++ S WW ++L++ DHTT A+ FR FRVP+PFF+ LV+L + + WF G D GR +P ELKVL LQIL RGN F DI +S +S A+TFH+ CK+FA E+++E++YLPTG VM YD++G GA+GSTDVTHI WGMCP+ R YTGKEG PT+A+QVTVDH+GRV+A+T GFTG+TNDKTIIRYD V I+T+ Y + YKL DG E KGCYL+VDNGYH+
Sbjct: 85 EDDEASREVKR-RRVYVRKDYTKSGWWQELMELRETGETDHTTREARRFRNNFRVPYPFFVHLVELVRDRDWFPTGESDVTGRQAVPVELKVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHK 350
BLAST of mRNA_C-linearis_contig7.14643.1 vs. uniprot
Match: A0A6H5KEB6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEB6_9PHAE) HSP 1 Score: 309 bits (792), Expect = 3.290e-98 Identity = 171/341 (50.15%), Postives = 205/341 (60.12%), Query Frame = 3
Query: 12 EDSDEDE----PPVKRPRRVKQRKDWSTSAWWIQLQDGDLLDHTTDAAKVFRTRFRVPHPFFLELVKLAKGKKWFSEGGKDAVGRSGIPTELKVLTAL-----QILGRGN----------CFDDILQL---------------------------SLMSKSMAAATF---------------------------------HK*CKHFAQEMFEEHIYLPTGTYQADVMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNG 797
EDS+++E P KR RRV QR+DW TSAWW QLQ DL DHTT AA VFR RFRVP+PFF LVKL++ K+WFS G KD R GIP ELK+ T+ Q+ G N FD+ + L + + +M T HK C+HFA EMF+EHIYL TGTY +VM ++ +LG TGA GST+VTHIGW MCPFTLGRS+TGKEGFPTIA +VTVDHAGR +A+T GFTG+TNDKTIIRYD+GVN I+TE QY + YKLRKA+GT R R+GC+LIVDNG
Sbjct: 46 EDSEDEEEVVGPKAKRTRRVTQRRDWRTSAWWEQLQHVDLADHTTAAATVFRGRFRVPYPFFQNLVKLSRAKRWFSPGEKDTANREGIPLELKLRTSTPVEDEQVDGTSNHKFCRHFAAEMFDEHIYLLTGTYLDEVMGIFHQLGCTGACGSTNVTHIGWNMCPFTLGRSFTGKEGFPTIACEVTVDHAGRALAVTNGFTHKFCRHFAAEMFDEHIYLLTGTYLDEVMGIFHQLGCTGACGSTNVTHIGWNMCPFTLGRSFTGKEGFPTIACEVTVDHAGRALAVTNGFTGATNDKTIIRYDSGVNKIRTESQYTEREYKLRKANGTERTRRGCFLIVDNG 386
BLAST of mRNA_C-linearis_contig7.14643.1 vs. uniprot
Match: A0A6H5K6N4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6N4_9PHAE) HSP 1 Score: 284 bits (726), Expect = 3.960e-94 Identity = 139/177 (78.53%), Postives = 147/177 (83.05%), Query Frame = 3
Query: 276 KVLTALQILGRGNCFDDILQLSLMSKSMAAATFHK*CKHFAQEMFEEHIYLPTGTYQADVMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNGYHE 806
+VLT LQ LGRGNCFDDI QLSLMSK MAAATFHK CKHFAQE+FEEHIYLPTG+YQ +VM MYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGR IA+T+G V+ IKT+ QY TYKLR ADGTFRERKGCYLIVDNGYHE
Sbjct: 3 QVLTTLQTLGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRAIAITSG----------------VHTIKTDAQYTKRTYKLRGADGTFRERKGCYLIVDNGYHE 163
BLAST of mRNA_C-linearis_contig7.14643.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE) HSP 1 Score: 284 bits (727), Expect = 1.430e-90 Identity = 144/249 (57.83%), Postives = 172/249 (69.08%), Query Frame = 3
Query: 66 RKDWSTSAWWIQLQDGDLLDHTTDAAKVFRTRFRVPHPFFLELVKLAKGKKWFSEGGKDAVGRSGIPTELKVLTALQILGRGNCFDDILQLSLMSKSMAAATFHK*CKHFAQEMFEEHIYLPTGTY-QAD-VMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNGYHE 806
+ D ST AW L+D DL D T+ AAK FR FRVP+PFFL LV+L K K WF+ +DA GR P E KVL L ILGRGN F I LS MS FH+ C+HFA EM++EHI+LP+ + D VM Y+KLG GA+GSTDVTHIGW CP+ GRSYTGKEG PT+ YQVTV+HAGRV+A+T GFTGSTNDKTII D V+ I+T+ QY + + + K DGT KGCYLIVDNGYH+
Sbjct: 57 KNDTSTCAWAQVLEDEDLKDPTSIAAKKFREDFRVPYPFFLRLVELVKKKDWFATTQRDAYGRRCHPVEHKVLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHK 305
BLAST of mRNA_C-linearis_contig7.14643.1 vs. uniprot
Match: D7FPI7_ECTSI (Transposon protein, putative, Pong sub-class n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI7_ECTSI) HSP 1 Score: 281 bits (720), Expect = 3.840e-90 Identity = 145/263 (55.13%), Postives = 174/263 (66.16%), Query Frame = 3
Query: 33 PPVKRPR---RVKQRKDWSTSAWWIQLQDGDLLDHTTDAAKVFRTRFRVPHPFFLELVKLAKGKKWFSEGGKDAVGRSGIPTELKVLTALQILGRGNCFDDILQLSLMSKSMAAATFHK*CKHFAQEMFEEHIYLPTGTY-QAD-VMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNGYHE 806
P + RPR +QRK AW L+D DL + + +K FR FRVP FFL LV L K K WF+ G DA GR P E KVL L ILGRGNCF I Q+S MS + A FH CKHFA+EM++EHIYLP+ + D VM YD+LG +GA+GS DVTHI W CP+ L RSYTGKEG PTI YQVTV+HAGR A+T GFTGSTNDKTI+ +DA V I+T+ QY + T+ + DGT KGCYL+VDNGYH+
Sbjct: 41 PDLTRPRLSRTQRQRKYVERCAWARMLEDKDLEESNSRTSKQFRLDFRVPCAFFLRLVALVKSKNWFATAGCDAAGRQSHPVEHKVLAWLTILGRGNCFASIYQMSWMSAATVQAMFHMFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIVWNKCPYNLPRSYTGKEGVPTIGYQVTVNHAGRASAVTEGFTGSTNDKTIVCWDAAVEKIRTDKQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHK 303
BLAST of mRNA_C-linearis_contig7.14643.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE) HSP 1 Score: 279 bits (714), Expect = 1.910e-89 Identity = 139/251 (55.38%), Postives = 169/251 (67.33%), Query Frame = 3
Query: 60 KQRKDWSTSAWWIQLQDGDLLDHTTDAAKVFRTRFRVPHPFFLELVKLAKGKKWFSEGGKDAVGRSGIPTELKVLTALQILGRGNCFDDILQLSLMSKSMAAATFHK*CKHFAQEMFEEHIYLPTGTY-QAD-VMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNGYHE 806
++RK+ AW L+D DL D + ++K FR FRVP FFL LV L K K WF+ G DA R P E KVL L ILGRGNCF I Q+S MS FHK CKHFA+EM++EHIYLP+ + D VM YD+LG +GA+GS DVTHIGW CP+ L RSYTGKEG PT+ YQVTV+HAGR IA+T GFT STNDKT + +DA V I+T+ QY + T+ + DGT KGCYL+VDNGYH+
Sbjct: 26 RKRKEVEKCAWAQMLEDKDLEDSNSISSKQFRLDFRVPDSFFLRLVALVKSKDWFTTSGCDAARRQSHPVEHKVLAWLTILGRGNCFASIYQVSWMSAKTVQTMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGRAIAVTEGFTDSTNDKTTVCWDAVVEKIRTDNQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHK 276 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig7.14643.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig7.14643.1 >prot_C-linearis_contig7.14643.1 ID=prot_C-linearis_contig7.14643.1|Name=mRNA_C-linearis_contig7.14643.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=134bp MFEEHIYLPTGTYQADVMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSback to top mRNA from alignment at C-linearis_contig7:3990204..3991865+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig7.14643.1 ID=mRNA_C-linearis_contig7.14643.1|Name=mRNA_C-linearis_contig7.14643.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1662bp|location=Sequence derived from alignment at C-linearis_contig7:3990204..3991865+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig7:3990204..3991865+ >mRNA_C-linearis_contig7.14643.1 ID=mRNA_C-linearis_contig7.14643.1|Name=mRNA_C-linearis_contig7.14643.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=804bp|location=Sequence derived from alignment at C-linearis_contig7:3990204..3991865+ (Chordaria linearis ClinC8C monoicous)back to top |