mRNA_C-linearis_contig7.14643.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig7.14643.1
Unique NamemRNA_C-linearis_contig7.14643.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig7.14643.1 vs. uniprot
Match: A0A6H5JCU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCU6_9PHAE)

HSP 1 Score: 431 bits (1107), Expect = 4.060e-148
Identity = 227/379 (59.89%), Postives = 245/379 (64.64%), Query Frame = 3
Query:    3 IEWEDSDE-DEPPVKRPRRVKQRKDWSTSAWWIQLQDGDLLDHTTDAAKVFRTRFRVPHPFFLELVKLAKGKKWFSEGGKDAVGRSGIPTELK--------------------------------------------------------------------------------------------------------------VLTALQILGRGNCFDDILQLSLMSKSMAAATFHK*CKHFAQEMFEEHIYLPTGTYQADVMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNGYHE 806
             EWEDS E D PPVKR R+VK+R+DWSTSAWW+QLQ+ DLLDHTT+AAKVFRTRFRVPH FFLELVK+A+GKKWFS   KDAVGR GIP ELK                                                                                                              +LTALQILGRGNCFDDI QLSLMSK MAAATFHK CKHFAQE+FEEHIYLPTG+YQ +VM MYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGR IA+T+GFTG+TNDKTIIRYDAGV+ IKT+ QY   TYKLR+ADGTFRERKGCY IVDNGYHE
Sbjct:   48 FEWEDSGEQDGPPVKRSRQVKERRDWSTSAWWLQLQNADLLDHTTEAAKVFRTRFRVPHAFFLELVKMARGKKWFSVREKDAVGRRGIPIELKLSSYRSGLLLLVVNCSDVPSIEPMRWIVVHNFTRWYRRVHSSTAVVAEHGSMGNVPCTVTRTSHRWHRKYCCRRPTAREKRRTLWFRLHTFQTRGHLRGHATTFDAASTKILTALQILGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRAIAITSGFTGATNDKTIIRYDAGVHTIKTDAQYTKRTYKLRRADGTFRERKGCYYIVDNGYHE 426          
BLAST of mRNA_C-linearis_contig7.14643.1 vs. uniprot
Match: A0A6H5KSI7_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI7_9PHAE)

HSP 1 Score: 379 bits (973), Expect = 5.690e-129
Identity = 184/269 (68.40%), Postives = 214/269 (79.55%), Query Frame = 3
Query:   12 EDSDEDE----PPVKRPRRVKQRKDWSTSAWWIQLQDGDLLDHTTDAAKVFRTRFRVPHPFFLELVKLAKGKKWFSEGGKDAVGRSGIPTELKVLTALQILGRGNCFDDILQLSLMSKSMAAATFHK*CKHFAQEMFEEHIYLPTGTYQADVMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNGYHE 806
            EDS+++E    P VKR RRV QR+DW TSAWW +LQD DL DHTT AAKVFR RFRVP+PFF ELVKL++ K+WFS G KDA  R GIP ELKVL      G+GNCFDD+ QLS MS+S+A A FHK C+H A EMF+EHIYLPTGTY  +VM ++ +LG TGA GSTDVTHIG  MCPFTLGRS+TGKEGFPTIAY+VTVDHAGR +A+T GF G TNDKT IRYD+GVN I+TE QY +  YKLRK +GT R R+GC+LIVDNGY+E
Sbjct:   46 EDSEDEEEVVGPKVKRTRRVTQRRDWRTSAWWEKLQDVDLADHTTAAAKVFRERFRVPYPFFQELVKLSRAKRWFSPGEKDAANREGIPLELKVL------GKGNCFDDVEQLSKMSESIAQALFHKFCRHSAAEMFDEHIYLPTGTYLDEVMGIFHQLGCTGACGSTDVTHIGRNMCPFTLGRSFTGKEGFPTIAYEVTVDHAGRALAVTNGFAGGTNDKTTIRYDSGVNKIRTESQYTEREYKLRKVNGTERTRRGCFLIVDNGYYE 308          
BLAST of mRNA_C-linearis_contig7.14643.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 317 bits (811), Expect = 6.960e-103
Identity = 154/271 (56.83%), Postives = 195/271 (71.96%), Query Frame = 3
Query:   12 EDSDEDEPPVKRPRRVKQRKDWSTSAWWIQLQD------GDLLDHTTDAAKVFRTRFRVPHPFFLELVKLAKGKKWFSEGGKDAVGRSGIPTELKVLTALQILGRGNCFDDILQLSLMSKSMAAATFHK*CKHFAQEMFEEHIYLPTGTYQADVMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNGYHE 806
            E+ +ED   +KR RRV  RKD++ S W IQLQ+        ++D T+  A+ FR  FR+P+PFF+ELV L K + WF  G +DA GR GIP +LKVL  LQIL RGNCF DI  +S +S   AAATFH+  ++FA+EM+ EHI+LPTG YQ  VM  YD+LG +GA GSTDVTHI WGMCP+   RSYTGKEG+PT+AYQVTVDH  RV+A+T GFTGSTNDK+IIRYD  V  I+ +  Y +  + + +ADGT  + KGCYL+VDNGYH+
Sbjct:   65 EEEEEDNREIKR-RRVYPRKDYNISGWAIQLQELKDLEVDGIVDPTSRPARRFRESFRLPYPFFVELVALVKQRDWFPTGKQDASGRRGIPVQLKVLACLQILARGNCFADIYHMSFISMQTAAATFHRFTRYFAREMYAEHIFLPTGDYQKKVMTQYDRLGFSGATGSTDVTHIPWGMCPYNQARSYTGKEGYPTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHK 334          
BLAST of mRNA_C-linearis_contig7.14643.1 vs. uniprot
Match: A0A6H5KH50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH50_9PHAE)

HSP 1 Score: 301 bits (772), Expect = 8.430e-100
Identity = 143/166 (86.14%), Postives = 155/166 (93.37%), Query Frame = 3
Query:  276 KVLTALQILGRGNCFDDILQLSLMSKSMAAATFHK*CKHFAQEMFEEHIYLPTGTYQADVMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKG 773
            +VLTALQILGRGNCFDDI QLSLMSK MAAATFHK CKHFAQE+FEEHIYLPTG+YQ +VM MYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGR IA+T+GFTG+TNDKTI+RYDAGV+ IKT+ QY   TYKLR+ADGT+RERKG
Sbjct:    3 QVLTALQILGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRAIAITSGFTGATNDKTIMRYDAGVHTIKTDAQYTKRTYKLRRADGTYRERKG 168          
BLAST of mRNA_C-linearis_contig7.14643.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 306 bits (785), Expect = 8.900e-99
Identity = 147/267 (55.06%), Postives = 186/267 (69.66%), Query Frame = 3
Query:   15 DSDEDEPPVKRPRRVKQRKDWSTSAWW---IQLQDGDLLDHTTDAAKVFRTRFRVPHPFFLELVKLAKGKKWFSEGGKDAVGRSGIPTELKVLTALQILGRGNCFDDILQLSLMSKSMAAATFHK*CKHFAQEMFEEHIYLPTGTYQADVMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNGYHE 806
            + DE    VKR RRV  RKD++ S WW   ++L++    DHTT  A+ FR  FRVP+PFF+ LV+L + + WF  G  D  GR  +P ELKVL  LQIL RGN F DI  +S +S    A+TFH+ CK+FA E+++E++YLPTG     VM  YD++G  GA+GSTDVTHI WGMCP+   R YTGKEG PT+A+QVTVDH+GRV+A+T GFTG+TNDKTIIRYD  V  I+T+  Y +  YKL   DG   E KGCYL+VDNGYH+
Sbjct:   85 EDDEASREVKR-RRVYVRKDYTKSGWWQELMELRETGETDHTTREARRFRNNFRVPYPFFVHLVELVRDRDWFPTGESDVTGRQAVPVELKVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHK 350          
BLAST of mRNA_C-linearis_contig7.14643.1 vs. uniprot
Match: A0A6H5KEB6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEB6_9PHAE)

HSP 1 Score: 309 bits (792), Expect = 3.290e-98
Identity = 171/341 (50.15%), Postives = 205/341 (60.12%), Query Frame = 3
Query:   12 EDSDEDE----PPVKRPRRVKQRKDWSTSAWWIQLQDGDLLDHTTDAAKVFRTRFRVPHPFFLELVKLAKGKKWFSEGGKDAVGRSGIPTELKVLTAL-----QILGRGN----------CFDDILQL---------------------------SLMSKSMAAATF---------------------------------HK*CKHFAQEMFEEHIYLPTGTYQADVMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNG 797
            EDS+++E    P  KR RRV QR+DW TSAWW QLQ  DL DHTT AA VFR RFRVP+PFF  LVKL++ K+WFS G KD   R GIP ELK+ T+      Q+ G  N           FD+ + L                           + +  +M   T                                  HK C+HFA EMF+EHIYL TGTY  +VM ++ +LG TGA GST+VTHIGW MCPFTLGRS+TGKEGFPTIA +VTVDHAGR +A+T GFTG+TNDKTIIRYD+GVN I+TE QY +  YKLRKA+GT R R+GC+LIVDNG
Sbjct:   46 EDSEDEEEVVGPKAKRTRRVTQRRDWRTSAWWEQLQHVDLADHTTAAATVFRGRFRVPYPFFQNLVKLSRAKRWFSPGEKDTANREGIPLELKLRTSTPVEDEQVDGTSNHKFCRHFAAEMFDEHIYLLTGTYLDEVMGIFHQLGCTGACGSTNVTHIGWNMCPFTLGRSFTGKEGFPTIACEVTVDHAGRALAVTNGFTHKFCRHFAAEMFDEHIYLLTGTYLDEVMGIFHQLGCTGACGSTNVTHIGWNMCPFTLGRSFTGKEGFPTIACEVTVDHAGRALAVTNGFTGATNDKTIIRYDSGVNKIRTESQYTEREYKLRKANGTERTRRGCFLIVDNG 386          
BLAST of mRNA_C-linearis_contig7.14643.1 vs. uniprot
Match: A0A6H5K6N4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6N4_9PHAE)

HSP 1 Score: 284 bits (726), Expect = 3.960e-94
Identity = 139/177 (78.53%), Postives = 147/177 (83.05%), Query Frame = 3
Query:  276 KVLTALQILGRGNCFDDILQLSLMSKSMAAATFHK*CKHFAQEMFEEHIYLPTGTYQADVMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNGYHE 806
            +VLT LQ LGRGNCFDDI QLSLMSK MAAATFHK CKHFAQE+FEEHIYLPTG+YQ +VM MYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGR IA+T+G                V+ IKT+ QY   TYKLR ADGTFRERKGCYLIVDNGYHE
Sbjct:    3 QVLTTLQTLGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRAIAITSG----------------VHTIKTDAQYTKRTYKLRGADGTFRERKGCYLIVDNGYHE 163          
BLAST of mRNA_C-linearis_contig7.14643.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE)

HSP 1 Score: 284 bits (727), Expect = 1.430e-90
Identity = 144/249 (57.83%), Postives = 172/249 (69.08%), Query Frame = 3
Query:   66 RKDWSTSAWWIQLQDGDLLDHTTDAAKVFRTRFRVPHPFFLELVKLAKGKKWFSEGGKDAVGRSGIPTELKVLTALQILGRGNCFDDILQLSLMSKSMAAATFHK*CKHFAQEMFEEHIYLPTGTY-QAD-VMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNGYHE 806
            + D ST AW   L+D DL D T+ AAK FR  FRVP+PFFL LV+L K K WF+   +DA GR   P E KVL  L ILGRGN F  I  LS MS       FH+ C+HFA EM++EHI+LP+    + D VM  Y+KLG  GA+GSTDVTHIGW  CP+  GRSYTGKEG PT+ YQVTV+HAGRV+A+T GFTGSTNDKTII  D  V+ I+T+ QY +  + + K DGT    KGCYLIVDNGYH+
Sbjct:   57 KNDTSTCAWAQVLEDEDLKDPTSIAAKKFREDFRVPYPFFLRLVELVKKKDWFATTQRDAYGRRCHPVEHKVLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHK 305          
BLAST of mRNA_C-linearis_contig7.14643.1 vs. uniprot
Match: D7FPI7_ECTSI (Transposon protein, putative, Pong sub-class n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI7_ECTSI)

HSP 1 Score: 281 bits (720), Expect = 3.840e-90
Identity = 145/263 (55.13%), Postives = 174/263 (66.16%), Query Frame = 3
Query:   33 PPVKRPR---RVKQRKDWSTSAWWIQLQDGDLLDHTTDAAKVFRTRFRVPHPFFLELVKLAKGKKWFSEGGKDAVGRSGIPTELKVLTALQILGRGNCFDDILQLSLMSKSMAAATFHK*CKHFAQEMFEEHIYLPTGTY-QAD-VMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNGYHE 806
            P + RPR     +QRK     AW   L+D DL +  +  +K FR  FRVP  FFL LV L K K WF+  G DA GR   P E KVL  L ILGRGNCF  I Q+S MS +   A FH  CKHFA+EM++EHIYLP+    + D VM  YD+LG +GA+GS DVTHI W  CP+ L RSYTGKEG PTI YQVTV+HAGR  A+T GFTGSTNDKTI+ +DA V  I+T+ QY + T+ +   DGT    KGCYL+VDNGYH+
Sbjct:   41 PDLTRPRLSRTQRQRKYVERCAWARMLEDKDLEESNSRTSKQFRLDFRVPCAFFLRLVALVKSKNWFATAGCDAAGRQSHPVEHKVLAWLTILGRGNCFASIYQMSWMSAATVQAMFHMFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIVWNKCPYNLPRSYTGKEGVPTIGYQVTVNHAGRASAVTEGFTGSTNDKTIVCWDAAVEKIRTDKQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHK 303          
BLAST of mRNA_C-linearis_contig7.14643.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE)

HSP 1 Score: 279 bits (714), Expect = 1.910e-89
Identity = 139/251 (55.38%), Postives = 169/251 (67.33%), Query Frame = 3
Query:   60 KQRKDWSTSAWWIQLQDGDLLDHTTDAAKVFRTRFRVPHPFFLELVKLAKGKKWFSEGGKDAVGRSGIPTELKVLTALQILGRGNCFDDILQLSLMSKSMAAATFHK*CKHFAQEMFEEHIYLPTGTY-QAD-VMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNGYHE 806
            ++RK+    AW   L+D DL D  + ++K FR  FRVP  FFL LV L K K WF+  G DA  R   P E KVL  L ILGRGNCF  I Q+S MS       FHK CKHFA+EM++EHIYLP+    + D VM  YD+LG +GA+GS DVTHIGW  CP+ L RSYTGKEG PT+ YQVTV+HAGR IA+T GFT STNDKT + +DA V  I+T+ QY + T+ +   DGT    KGCYL+VDNGYH+
Sbjct:   26 RKRKEVEKCAWAQMLEDKDLEDSNSISSKQFRLDFRVPDSFFLRLVALVKSKDWFTTSGCDAARRQSHPVEHKVLAWLTILGRGNCFASIYQVSWMSAKTVQTMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGRAIAVTEGFTDSTNDKTTVCWDAVVEKIRTDNQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHK 276          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig7.14643.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCU6_9PHAE4.060e-14859.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSI7_9PHAE5.690e-12968.40DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5JAU4_9PHAE6.960e-10356.83Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KH50_9PHAE8.430e-10086.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPH7_9PHAE8.900e-9955.06Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEB6_9PHAE3.290e-9850.15DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K6N4_9PHAE3.960e-9478.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBE2_9PHAE1.430e-9057.83Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D7FPI7_ECTSI3.840e-9055.13Transposon protein, putative, Pong sub-class n=1 T... [more]
A0A6H5JHI0_9PHAE1.910e-8955.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig7contigC-linearis_contig7:3990204..3991865 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score175.6
Seed ortholog evalue1.5e-41
Seed eggNOG ortholog2880.D7FSK2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Plant transposon protein
EggNOG OGs2E2RF@1,2S9YA@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size806
Cds size402
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig7.14643.1prot_C-linearis_contig7.14643.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig7 3991464..3991865 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930336.7786913-UTR-C-linearis_contig7:3990203..39904811622930336.7786913-UTR-C-linearis_contig7:3990203..3990481Chordaria linearis ClinC8C monoicousUTRC-linearis_contig7 3990204..3990481 +
1690881019.1041448-UTR-C-linearis_contig7:3990203..39904811690881019.1041448-UTR-C-linearis_contig7:3990203..3990481Chordaria linearis ClinC8C monoicousUTRC-linearis_contig7 3990204..3990481 +
1622930336.800726-UTR-C-linearis_contig7:3991337..39914631622930336.800726-UTR-C-linearis_contig7:3991337..3991463Chordaria linearis ClinC8C monoicousUTRC-linearis_contig7 3991338..3991463 +
1690881019.1168413-UTR-C-linearis_contig7:3991337..39914631690881019.1168413-UTR-C-linearis_contig7:3991337..3991463Chordaria linearis ClinC8C monoicousUTRC-linearis_contig7 3991338..3991463 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930336.8175142-CDS-C-linearis_contig7:3991463..39918651622930336.8175142-CDS-C-linearis_contig7:3991463..3991865Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 3991464..3991865 +
1690881019.1289515-CDS-C-linearis_contig7:3991463..39918651690881019.1289515-CDS-C-linearis_contig7:3991463..3991865Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 3991464..3991865 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig7.14643.1

>prot_C-linearis_contig7.14643.1 ID=prot_C-linearis_contig7.14643.1|Name=mRNA_C-linearis_contig7.14643.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=134bp
MFEEHIYLPTGTYQADVMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRS
YTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKT
EGQYKDCTYKLRKADGTFRERKGCYLIVDNGYHE
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mRNA from alignment at C-linearis_contig7:3990204..3991865+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig7.14643.1 ID=mRNA_C-linearis_contig7.14643.1|Name=mRNA_C-linearis_contig7.14643.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1662bp|location=Sequence derived from alignment at C-linearis_contig7:3990204..3991865+ (Chordaria linearis ClinC8C monoicous)
CCATTGAGTGGGAGGACAGTGACGAGGATGAGCCGCCCGTGAAGCGTCCG AGACGAGTGAAGCAGCGCAAAGACTGGTCGACCTCTGCATGGTGGATACA GCTGCAAGATGGGGACCTGTTGGACCACACAACGGACGCAGCAAAGGTCT TCCGCACTCGCTTTCGCGTACCTCACCCCTTCTTTCTGGAGCTGGTCAAG TTGGCCAAGGGGAAGAAGTGGTTCTCTGAGGGAGGAAAGGATGCTGTCGG GCGCTCCGGGATACCGACTGAACTCAAGGTGAGCTACACGGCTGCTGCTG AATGGCCGCAGTCCTCCTGTGTAAACTACAATGTGCAATATTTGTTGGTG ATGACCACCACAAACAGGCTGCTCCGTTCTCCAGACACATGATAAGTTCT TGCCCTCCGTTGCCACCCGACGTCTCTGCTATTCCCCAAGCAAACCCTTT GTTGAACTGTGATCCAAAGCACCGACGACTCTCTTTCTCCTGGCCATTCT GGCTCTATCGCACAAGAACTGCGAGATACGTTTGGTGTGGTGTACGCTCG TGTTCCAATGCGGTCGTGTGCGATGTCTCCGCCTGGATAGACTATATGCG AAGCACAGCAAGAACACAAGCGTTGCCTCTGCTGCATTACTCTGAGTCTG GTACAACACAGAGGCTGGTAGATTAAGAGTGCTTTGCCGAACACTCAGCC AGTTCGTCAGACCGTAGTTTTTGATTTGTATTCACAGCAGCAGGCTGACC TGGAAGCAGCACTGTAATCCGTTAGCAAGGCGGCAGGTGCCTTACACCCC ACGCGCAGGTCGCATCGCTGCGAAGCAAGACTCTTGCAGTAAAATCGCAC ATCGTTGGGATAGACACGTCGGGACTACAAGTAGCCGCCAAAGTTGTGCT TTCTGGTTCTGCTACAAATGTGACACACTATTGAATGCACCAGCCCGGTG CTCGGCAAACCACGCCCTCCCTGTCAACTGCGGAGTGTAGTTATTATATA AACATCGCTGACCACGTTTTAATGTGGCCGATGCTATAGATCGTGACGCC GACTCTGCTTAAACAACGATTAATTTAGTACACCGTGGCCAATGGTTCCT TTCGCACATGCCTTCTCCCCACACTCTCCTGCAGGTATTGACGGCCCTCC AGATACTGGGCAGGGGCAACTGCTTCGACGACATCTTGCAGCTGTCGCTG ATGAGCAAGTCCATGGCAGCCGCTACGTTCCACAAATAATGCAAGCATTT TGCGCAGGAAATGTTCGAGGAGCACATCTACCTCCCTACCGGAACGTACC AGGCGGACGTCATGAACATGTACGACAAGCTCGGCATGACGGGGGCCATC GGATCTACCGACGTGACCCACATCGGGTGGGGCATGTGCCCTTTCACCCT TGGCCGTTCTTACACGGGCAAGGAAGGATTCCCGACCATCGCCTACCAAG TGACAGTCGACCACGCAGGCCGAGTCATCGCGCTCACCGCCGGTTTCACC GGCTCGACCAATGACAAGACCATCATCCGCTACGACGCCGGTGTGAACGC CATCAAGACGGAAGGCCAGTACAAGGACTGCACGTACAAGCTCCGGAAGG CGGATGGGACTTTCCGTGAGCGCAAGGGGTGCTACCTGATCGTCGACAAC GGGTACCACGAG
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Coding sequence (CDS) from alignment at C-linearis_contig7:3990204..3991865+

>mRNA_C-linearis_contig7.14643.1 ID=mRNA_C-linearis_contig7.14643.1|Name=mRNA_C-linearis_contig7.14643.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=804bp|location=Sequence derived from alignment at C-linearis_contig7:3990204..3991865+ (Chordaria linearis ClinC8C monoicous)
ATGTTCGAGGAGCACATCTACCTCCCTACCGGAACGTACCAGGCGGACGT
CATGAACATGTACGACAAGCTCGGCATGACGGGGGCCATCGGATCTACCG
ACGTGACCCACATCGGGTGGGGCATGTGCCCTTTCACCCTTGGCCGTTCT
TACACGGGCAAGGAAGGATTCCCGACCATCGCCTACCAAGTGACAGTCGA
CCACGCAGGCCGAGTCATCGCGCTCACCGCCGGTTTCACCGGCTCGACCA
ATGACAAGACCATCATCCGCTACGACGCCGGTGTGAACGCCATCAAGACG
GAAGGCCAGTACAAGGACTGCACGTACAAGCTCCGGAAGGCGGATGGGAC
TTTCCGTGAGCGCAAGGGGTGCTACCTGATCGTCGACAACGGGTACCACG
AGATGTTCGAGGAGCACATCTACCTCCCTACCGGAACGTACCAGGCGGAC
GTCATGAACATGTACGACAAGCTCGGCATGACGGGGGCCATCGGATCTAC
CGACGTGACCCACATCGGGTGGGGCATGTGCCCTTTCACCCTTGGCCGTT
CTTACACGGGCAAGGAAGGATTCCCGACCATCGCCTACCAAGTGACAGTC
GACCACGCAGGCCGAGTCATCGCGCTCACCGCCGGTTTCACCGGCTCGAC
CAATGACAAGACCATCATCCGCTACGACGCCGGTGTGAACGCCATCAAGA
CGGAAGGCCAGTACAAGGACTGCACGTACAAGCTCCGGAAGGCGGATGGG
ACTTTCCGTGAGCGCAAGGGGTGCTACCTGATCGTCGACAACGGGTACCA
CGAG
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