mRNA_C-linearis_contig7.14634.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig7.14634.1 vs. uniprot
Match: D7FTX7_ECTSI (Ankyrin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTX7_ECTSI) HSP 1 Score: 275 bits (704), Expect = 2.260e-82 Identity = 243/406 (59.85%), Postives = 293/406 (72.17%), Query Frame = 3
Query: 81 MGSVLAGACGPRNRE---DQVDQAAACEPLPELDAWINHSATPDLPAIVADTHRNSSRENWLKFLGSGLLEASSDGNLLAVKQLLAGGAPLDTRDAEGRTPLHRSSAAGHAHVVGFLLHQEEENDGSPLGASPD----LPTP-RLVWQPSAEGPVLVPSISLKKRVTVNARDNLRSCSAHLAAASGHAHVMQLLVLHGADISCVNGLQQTPLHAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRGANELALDADERTPRELIGDRITDEERLIDPSLPEREERVGRLLDDAPKNRLWRRRRLLPLLRWRPPPPSYDAG------LDGGPDRSLAGVLAELEEGIVRIIVSYL 1256
MG+ L G+CG R +E + D E PELDAWI+HS P L +IV + ++ SSRE W KFLG+GLL+A+SDGNL V+QLLA GAPL RD EG TPLHR+S AGHA V LL + GASP +P P L WQ S EGPVLVPS+SL KR T++ARD+ SC HLAAA GHA V+Q+L+ HGAD+S NG+ Q+PLH AA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX A+E A+D D+ TP ++ +R+T+E++ DP++ E + R+L DAP++RLWRRRRLLPLL WR PPP++D G +D G +S+ ++ EEGI+R IVSYL
Sbjct: 1 MGAALGGSCGGRTKEVAGSECDGPPPGEQPPELDAWIDHSTWPGLRSIVTEAYQISSRERWSKFLGAGLLDAASDGNLAGVRQLLAAGAPLHARDLEGHTPLHRASVAGHAGVAEQLLSSGDGRAPPLGGASPSSSGMVPEPPSLKWQASMEGPVLVPSVSLVKRTTLDARDHSGSCPIHLAAACGHADVVQVLLQHGADVSGSNGVAQSPLHTAAAGLDSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADERAVDIDDLTPENMVCERMTEEQKAADPTIAPVGETICRMLADAPQDRLWRRRRLLPLLHWRQPPPAFDTGPGTAVTVDAGSGQSIFELVVCEEEGIMRNIVSYL 406
BLAST of mRNA_C-linearis_contig7.14634.1 vs. uniprot
Match: UPI00201EF667 (death-associated protein kinase 1-like n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI00201EF667) HSP 1 Score: 58.5 bits (140), Expect = 2.800e-5 Identity = 49/146 (33.56%), Postives = 74/146 (50.68%), Query Frame = 3
Query: 276 LLEASSDGNLLAVKQLLAGG-APLDTRDAEGRTPLHRSSAAGHAHVVGFLLHQEEENDGSPLGASPDLPTPRL---VWQPSAEGPVLVPSISLKKRVTVNARDNLRSCSAHLAAASGHAHVMQLLVLHGADISCVNGLQQTPLHAA 701
LLEAS +GN+ AVK++LA G A +++R G TP+ ++ GH VV L+ ++G+ + + T L W E V S+++ V +N R AA GH V++LL+ GAD+S V+G LH A
Sbjct: 280 LLEASREGNMAAVKRILAAGRADVNSRGVVGLTPVMSTAHGGHRDVVELLV-----SEGADVSLVDEDGTNILHYACWGGDVETVKFVLSLNV---VDINCRGRGSRTPVMAAAFKGHRDVVELLMSEGADVSPVDGDGNNILHYA 417
BLAST of mRNA_C-linearis_contig7.14634.1 vs. uniprot
Match: A0A8J6E1J1_9EUKA (Ankyrin repeats (3 copies) n=1 Tax=Carpediemonas membranifera TaxID=201153 RepID=A0A8J6E1J1_9EUKA) HSP 1 Score: 58.9 bits (141), Expect = 3.340e-5 Identity = 56/169 (33.14%), Postives = 78/169 (46.15%), Query Frame = 3
Query: 210 AIVA----DTHRNSSRENWLKFLGSGLLEASSDGNLLAVKQLLAGGAPLDTRDAEGRTPLHRSSAAGHAHVVGFLLHQEEENDGSPLGASPDLP-TPRLVWQPSAEGPVLVPSISLKKRVTVNARDNLRSCSAHLAAASGHAHVMQLLVLHGADISCVNGLQQTPLHAA 701
A+VA TH + + W + LL+A+ DG+ VK L + G ++ DA+ T + ++ GH+ VV LL GASP +P PR V QP+ E T R + HLAA SGHA ++LL+ GADI + QTPL A
Sbjct: 981 AVVAVRRSKTHSKTITQPW-----APLLQAAFDGDSNRVKALCSAGVDVNEADADRMTAISLAARMGHSGVVVALLA---------AGASPTMPHQPRTVSQPAIE--------------TFTGRT---AGPLHLAAESGHAACVKLLLDAGADIHVADSEGQTPLDLA 1118
BLAST of mRNA_C-linearis_contig7.14634.1 vs. uniprot
Match: UPI001EAFEEF9 (ankyrin repeat domain-containing protein 29-like isoform X1 n=2 Tax=Haliotis rufescens TaxID=6454 RepID=UPI001EAFEEF9) HSP 1 Score: 57.8 bits (138), Expect = 3.620e-5 Identity = 48/145 (33.10%), Postives = 71/145 (48.97%), Query Frame = 3
Query: 270 SGLLEASSDGNLLAVKQ-LLAGGAPLDTRDAEGRTPLHRSSAAGHAHVVGFLLHQEEENDGSPLGASPDLPTPRLVWQPSAEGPVLVPSISLKKRVTVNARDNLRSCSAHLAAASGHAHVMQLLVLHGADISCVNGLQQTPLHAA 701
S L +ASS GNL AVK+ L AG A ++ R G TP+ ++ GH VV L+ + G+ + D+ L W A +V I + V +++R AA GH+ V++ L+ GAD+S V Q+ LH A
Sbjct: 175 SDLFDASSMGNLSAVKRNLAAGSADVNCRVWGGMTPVMVAAEFGHREVVELLVSK-----GADVSLVADVGDHTLHWACMAGNVEMVKFIISQNMVDIDSRGGWGRTPVMKAALFGHSEVVKFLLSQGADVSLVADDGQSILHLA 314
BLAST of mRNA_C-linearis_contig7.14634.1 vs. uniprot
Match: A0A3P7JKD2_STRVU (Uncharacterized protein (Fragment) n=1 Tax=Strongylus vulgaris TaxID=40348 RepID=A0A3P7JKD2_STRVU) HSP 1 Score: 57.8 bits (138), Expect = 3.920e-5 Identity = 40/141 (28.37%), Postives = 71/141 (50.35%), Query Frame = 3
Query: 285 ASSDGNLLAVKQLLAGGAPLDTRDAEGRTPLHRSSAAGHAHVVGFLLHQEEENDGSPLGASPDLPTPRLVWQPSAEGPVLVPSISLKKRVTVNARDN-LRSCSAHLAAASGHAHVMQLLVLHGADISCVNGLQQTPLHAAA 704
A+ +G L+ + LLA GA + RD +G+TPLH ++ + VV L ++ N G + T + V+ + + K + + A+ + + + H+AAA GHA+++Q+L+ +GA+ N T LH A
Sbjct: 73 AARNGQLVVSQTLLALGANPNARDDKGQTPLHLAAENDYPDVVKLFLKMKQNNRGVLTAIDHNGFTCAHIAAMKGSLAVVKELMMIDKAMVIQAKTKTMEATTLHMAAAGGHANIVQILLENGANAEDENAHGMTALHLGA 213
BLAST of mRNA_C-linearis_contig7.14634.1 vs. uniprot
Match: UPI001EB05A97 (ankyrin repeat domain-containing protein 1-like isoform X1 n=2 Tax=Haliotis rufescens TaxID=6454 RepID=UPI001EB05A97) HSP 1 Score: 56.6 bits (135), Expect = 8.530e-5 Identity = 48/146 (32.88%), Postives = 74/146 (50.68%), Query Frame = 3
Query: 276 LLEASSDGNLLAVKQLLAGG-APLDTRDAEGRTPLHRSSAAGHAHVVGFLLHQEEENDGSPLGASPDLPTPRL---VWQPSAEGPVLVPSISLKKRVTVNARDNLRSCSAHLAAASGHAHVMQLLVLHGADISCVNGLQQTPLHAA 701
LLEAS +G++ AVK++LA G A +++R G TP+ ++ GH VV L+ ++G+ + + T L W E V S+++ V +N R AA GH V++LL+ GAD+S V+G LH A
Sbjct: 177 LLEASREGDMAAVKRILAAGRADVNSRGVVGLTPVMSTAHGGHRDVVELLV-----SEGADVSLVDEDGTNILHYACWGGDVETVKFVLSLNV---VDINCRGRGSRTPVMAAAFKGHRDVVELLMSEGADVSPVDGDGNNILHYA 314 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig7.14634.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig7.14634.1 >prot_C-linearis_contig7.14634.1 ID=prot_C-linearis_contig7.14634.1|Name=mRNA_C-linearis_contig7.14634.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=393bp MGSVLAGACGPRNREDQVDQAAACEPLPELDAWINHSATPDLPAIVADTHback to top mRNA from alignment at C-linearis_contig7:3886065..3888778- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig7.14634.1 ID=mRNA_C-linearis_contig7.14634.1|Name=mRNA_C-linearis_contig7.14634.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2714bp|location=Sequence derived from alignment at C-linearis_contig7:3886065..3888778- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig7:3886065..3888778- >mRNA_C-linearis_contig7.14634.1 ID=mRNA_C-linearis_contig7.14634.1|Name=mRNA_C-linearis_contig7.14634.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2358bp|location=Sequence derived from alignment at C-linearis_contig7:3886065..3888778- (Chordaria linearis ClinC8C monoicous)back to top |