mRNA_C-linearis_contig7.14629.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig7.14629.1
Unique NamemRNA_C-linearis_contig7.14629.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig7.14629.1 vs. uniprot
Match: D7FTY1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTY1_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 5.320e-22
Identity = 69/139 (49.64%), Postives = 82/139 (58.99%), Query Frame = 1 
Query:   67 KGASPRAGVNKNFLLNTVHGLKSHNKREEEEECWRQHNLDQKAKRRRGRSHDDAACRARRVSSTDAAHRAASPISDADTRQFWAEQKRKAMTAALSTSSVGALLEGARPDSKHGDRCKSREQEQRSDGSDDGTSILSGN 483
            +G S RAGVNKNFLLNTVHGLKSHNKREEEE+CWRQH L+Q+A R R  +HD  A R RR    D    +AS  SD D R+FWAE+K + MTA        A            DR + RE       S++GT   +GN
Sbjct:    8 RGGSGRAGVNKNFLLNTVHGLKSHNKREEEEDCWRQHGLEQRA-RERLLAHD--ANRNRRNVPADGGDTSASHASDVDARRFWAERKERTMTATTPAIDPSAAXXXXXXXXXSVDRKRQRED------SEEGTGRANGN 137
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BLAST of mRNA_C-linearis_contig7.14629.1 vs. uniprot
Match: A0A6H5KLX3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLX3_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 1.980e-20
Identity = 57/93 (61.29%), Postives = 69/93 (74.19%), Query Frame = 1 
Query:   67 KGASPRAGVNKNFLLNTVHGLKSHNKREEEEECWRQHNLDQKAKRRRGRSHDDAACRARRVSSTDAAHRAASPISDADTRQFWAEQKRKAMTA 345
            +G S RAGVNKNFLLNTVHGL+SHNKREEEE+CWRQ+ L+Q+A R R  +HD  A R R+    D    +AS  SD D R+FWAE+K +AMTA
Sbjct:   19 RGGSSRAGVNKNFLLNTVHGLQSHNKREEEEDCWRQYGLEQRA-RERLLAHD--ANRNRQKFPADGGDTSASHASDVDARRFWAERKERAMTA 108
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BLAST of mRNA_C-linearis_contig7.14629.1 vs. uniprot
Match: T0Q3C6_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0Q3C6_SAPDV)

HSP 1 Score: 57.4 bits (137), Expect = 4.750e-6
Identity = 43/113 (38.05%), Postives = 59/113 (52.21%), Query Frame = 1 
Query:   76 SPRAGVNKNFLLNTVHGLKSHNKREEEEECWRQHNLDQKAKRRRGRSHDDAAC---RARRVSST-------DAAHRAASPISDADTRQFWAEQKRKAMTAALSTSSVGALLEG 384
            +P   VNK FLLNT+ G+ SHNKR+E ++CWR+ +L+ K  RRR            R RR SS+           R+ SP    D R +WAE+K      A  T+ + A L+G
Sbjct:   52 APATNVNKGFLLNTIRGVDSHNKRQEIDQCWRKRDLEAKVHRRRSXXXXXXXXXERRHRRRSSSLXXXXXXXXXXRSPSPTRAEDERSYWAERK------AARTAELLAQLDG 158
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BLAST of mRNA_C-linearis_contig7.14629.1 vs. uniprot
Match: A0A067D463_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067D463_SAPPC)

HSP 1 Score: 56.2 bits (134), Expect = 1.150e-5
Identity = 26/49 (53.06%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:   76 SPRAGVNKNFLLNTVHGLKSHNKREEEEECWRQHNLDQKAKRRRGRSHD 222
            +P   VNK FLLNT+ G+ SHNKR+E ++CWR+ +L+ K  RRR RS +
Sbjct:   52 APATNVNKGFLLNTIRGVDSHNKRQEIDQCWRKRDLEAKVHRRRSRSRE 100
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig7.14629.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FTY1_ECTSI5.320e-2249.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KLX3_9PHAE1.980e-2061.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
T0Q3C6_SAPDV4.750e-638.05Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A067D463_SAPPC1.150e-553.06Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig7contigC-linearis_contig7:3865942..3867548 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-07_002810.1
Exons2
Model size1012
Cds size690
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig7.14629.1prot_C-linearis_contig7.14629.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig7 3865987..3866676 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930278.961076-UTR-C-linearis_contig7:3865941..38659861622930278.961076-UTR-C-linearis_contig7:3865941..3865986Chordaria linearis ClinC8C monoicousUTRC-linearis_contig7 3865942..3865986 +
1690880989.4735994-UTR-C-linearis_contig7:3865941..38659861690880989.4735994-UTR-C-linearis_contig7:3865941..3865986Chordaria linearis ClinC8C monoicousUTRC-linearis_contig7 3865942..3865986 +
1622930279.0125887-UTR-C-linearis_contig7:3866676..38668581622930279.0125887-UTR-C-linearis_contig7:3866676..3866858Chordaria linearis ClinC8C monoicousUTRC-linearis_contig7 3866677..3866858 +
1690880989.5011053-UTR-C-linearis_contig7:3866676..38668581690880989.5011053-UTR-C-linearis_contig7:3866676..3866858Chordaria linearis ClinC8C monoicousUTRC-linearis_contig7 3866677..3866858 +
1622930279.034614-UTR-C-linearis_contig7:3867453..38675481622930279.034614-UTR-C-linearis_contig7:3867453..3867548Chordaria linearis ClinC8C monoicousUTRC-linearis_contig7 3867454..3867548 +
1690880989.5125144-UTR-C-linearis_contig7:3867453..38675481690880989.5125144-UTR-C-linearis_contig7:3867453..3867548Chordaria linearis ClinC8C monoicousUTRC-linearis_contig7 3867454..3867548 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930278.9811137-CDS-C-linearis_contig7:3865986..38666761622930278.9811137-CDS-C-linearis_contig7:3865986..3866676Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 3865987..3866676 +
1690880989.4896195-CDS-C-linearis_contig7:3865986..38666761690880989.4896195-CDS-C-linearis_contig7:3865986..3866676Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 3865987..3866676 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig7.14629.1

>prot_C-linearis_contig7.14629.1 ID=prot_C-linearis_contig7.14629.1|Name=mRNA_C-linearis_contig7.14629.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=230bp
MQGQAGGKGASPRAGVNKNFLLNTVHGLKSHNKREEEEECWRQHNLDQKA
KRRRGRSHDDAACRARRVSSTDAAHRAASPISDADTRQFWAEQKRKAMTA
ALSTSSVGALLEGARPDSKHGDRCKSREQEQRSDGSDDGTSILSGNDSMK
RGRKKDVRKTKKKKKRKREPRHSSSSSSSSSSSSSASESDVDEGRREGGK
ASRAGDKKRHHQRKRKKSKKHSSRKKSRT*
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mRNA from alignment at C-linearis_contig7:3865942..3867548+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig7.14629.1 ID=mRNA_C-linearis_contig7.14629.1|Name=mRNA_C-linearis_contig7.14629.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1607bp|location=Sequence derived from alignment at C-linearis_contig7:3865942..3867548+ (Chordaria linearis ClinC8C monoicous)
CCTCACCCTCCTCGACCCCGCTCCCCTCCTCTCTTGTCATCGGGCATGCA
GGGCCAGGCAGGAGGCAAGGGAGCGAGCCCTCGAGCGGGTGTTAACAAGA
ATTTTCTTCTCAACACGGTGCATGGGCTAAAGTCGCACAACAAGCGGGAG
GAGGAGGAGGAATGCTGGAGGCAGCACAACTTGGACCAGAAGGCGAAACG
GCGGCGGGGCCGTTCTCACGACGACGCCGCCTGCCGAGCGCGACGCGTAA
GCTCGACGGATGCAGCACACAGAGCAGCGAGTCCCATCTCCGATGCCGAT
ACTCGTCAGTTCTGGGCAGAGCAGAAGCGAAAGGCGATGACTGCTGCTTT
ATCGACTTCGTCGGTTGGTGCGTTGCTTGAAGGCGCCCGGCCCGATTCGA
AGCATGGCGACCGATGTAAGTCAAGAGAGCAAGAGCAGCGCTCCGACGGA
AGCGATGATGGAACGAGCATCCTTTCGGGTAATGACAGTATGAAGAGAGG
AAGAAAGAAGGATGTGAGGAAGACCAAGAAGAAAAAAAAACGGAAGCGTG
AACCCAGACACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTAGT
GCGTCCGAGAGCGATGTCGACGAGGGCCGGCGTGAAGGGGGCAAAGCCAG
CAGAGCCGGCGACAAAAAACGCCACCACCAAAGAAAACGGAAGAAGTCAA
AGAAACACAGCAGCAGGAAGAAGAGTAGAACATGACAGCTACGCGGCTGA
GGGAGGTGGTCGTGTTAAGCTGGCGCTCTAGTTCGACTGGAAGGGAGGTG
TTGCCGGGTCGGCCGTTTCTTTCGGTCCCGAGAGGCGCGTGGAGATGAAA
GCCAACGGCAAAGAAGCCGGATGAAGAGCTGGCTTTTATGAACGGTTTTG
GACACCTCATCTGTTAGGTACGCTCTGGTCATGGTGTGGTGAAATGGGGT
ATAGGTACAGGCACAAGCGTGATGTTAGGAAGAGAAAAATTGTAATTCTC
CGTTTCTTGCTCTCATCCACACAAATCGAACCACGCTCCCAATGTTGACG
TGTTTCCCCTGCGCAAGCGCCCAAACATGCCTCGCCACAGCAGTAGTGGT
TTTGTCGCATCGCTTGCTCGCAAATGTTGCTAATGTTTTCTCTGCCGCTA
CGAAAGCGGGTTGGATGTGTGTGCCGGAAACGATCTACTTGGACTAGACA
GTAGAAGAATTTCCTTGTGTTGTCAGACATTCCTCTACACTACTGGTACA
GTATAAGGGGTATGTACTACTCTCTGTTCCGCGGCAAGGGAGGTATTTCC
CCTCCAGAAACATGACGGCGTTGCCCTTGGGGGGACCAGTCGCGCTTTCG
TGTGAGCCTGGTGCCATATTTGCCCCGTGCTGCGCGTACATACCGCGGCG
GACTGCACGTTGAGGTTTGTTTATCTATTTGGCGCACACGCCGAAGTTGC
ACGAGCACATATGCTTCGGTGTGACAACTAACTGAAGTTTGTGTTTCTGC
TGCATCTTTCAGGGATAGCTGTTGCTGAGGGACCATGCTGGTGGAGCGTG
TGCAGCAACTATGCGAACTGGCCTTCGTCTGGAGCTGCCGACGTGGTTGA
AGTTGGG
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Coding sequence (CDS) from alignment at C-linearis_contig7:3865942..3867548+

>mRNA_C-linearis_contig7.14629.1 ID=mRNA_C-linearis_contig7.14629.1|Name=mRNA_C-linearis_contig7.14629.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1380bp|location=Sequence derived from alignment at C-linearis_contig7:3865942..3867548+ (Chordaria linearis ClinC8C monoicous)
ATGCAGGGCCAGGCAGGAGGCAAGGGAGCGAGCCCTCGAGCGGGTGTTAA
CAAGAATTTTCTTCTCAACACGGTGCATGGGCTAAAGTCGCACAACAAGC
GGGAGGAGGAGGAGGAATGCTGGAGGCAGCACAACTTGGACCAGAAGGCG
AAACGGCGGCGGGGCCGTTCTCACGACGACGCCGCCTGCCGAGCGCGACG
CGTAAGCTCGACGGATGCAGCACACAGAGCAGCGAGTCCCATCTCCGATG
CCGATACTCGTCAGTTCTGGGCAGAGCAGAAGCGAAAGGCGATGACTGCT
GCTTTATCGACTTCGTCGGTTGGTGCGTTGCTTGAAGGCGCCCGGCCCGA
TTCGAAGCATGGCGACCGATGTAAGTCAAGAGAGCAAGAGCAGCGCTCCG
ACGGAAGCGATGATGGAACGAGCATCCTTTCGGGTAATGACAGTATGAAG
AGAGGAAGAAAGAAGGATGTGAGGAAGACCAAGAAGAAAAAAAAACGGAA
GCGTGAACCCAGACACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GTAGTGCGTCCGAGAGCGATGTCGACGAGGGCCGGCGTGAAGGGGGCAAA
GCCAGCAGAGCCGGCGACAAAAAACGCCACCACCAAAGAAAACGGAAGAA
GTCAAAGAAACACAGCAGCAGGAAGAAGAGTAGAACATGAATGCAGGGCC
AGGCAGGAGGCAAGGGAGCGAGCCCTCGAGCGGGTGTTAACAAGAATTTT
CTTCTCAACACGGTGCATGGGCTAAAGTCGCACAACAAGCGGGAGGAGGA
GGAGGAATGCTGGAGGCAGCACAACTTGGACCAGAAGGCGAAACGGCGGC
GGGGCCGTTCTCACGACGACGCCGCCTGCCGAGCGCGACGCGTAAGCTCG
ACGGATGCAGCACACAGAGCAGCGAGTCCCATCTCCGATGCCGATACTCG
TCAGTTCTGGGCAGAGCAGAAGCGAAAGGCGATGACTGCTGCTTTATCGA
CTTCGTCGGTTGGTGCGTTGCTTGAAGGCGCCCGGCCCGATTCGAAGCAT
GGCGACCGATGTAAGTCAAGAGAGCAAGAGCAGCGCTCCGACGGAAGCGA
TGATGGAACGAGCATCCTTTCGGGTAATGACAGTATGAAGAGAGGAAGAA
AGAAGGATGTGAGGAAGACCAAGAAGAAAAAAAAACGGAAGCGTGAACCC
AGACACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTAGTGCGTC
CGAGAGCGATGTCGACGAGGGCCGGCGTGAAGGGGGCAAAGCCAGCAGAG
CCGGCGACAAAAAACGCCACCACCAAAGAAAACGGAAGAAGTCAAAGAAA
CACAGCAGCAGGAAGAAGAGTAGAACATGA
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