mRNA_C-linearis_contig7.14617.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig7.14617.1
Unique NamemRNA_C-linearis_contig7.14617.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig7.14617.1 vs. uniprot
Match: D7G200_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G200_ECTSI)

HSP 1 Score: 179 bits (454), Expect = 1.420e-50
Identity = 96/133 (72.18%), Postives = 105/133 (78.95%), Query Frame = 1 
Query:    4 GGVVVATCADDKTIRFFRVDGATFLGKLDVSGVCTTGRIRDMCYVEAANDGGXXXVDXX----GSEGSLVTVTSAGGVHVWGVPALEGVGTEGAGAELKMPLLATHSLKGEPRFTCVTACLSGEISEPAPGKS 390
            G V VATCADDKTIRFFR +G T LGK+DVS VC TGRIRDMC+V A     XXX  XX       GSL TVTS GGVHVWGVP LEGVG EG+GAEL +PLL+THSLKGEPRFTCVTACL G+++EPAPGKS
Sbjct:  259 GAVAVATCADDKTIRFFRTEGGTLLGKVDVSDVCPTGRIRDMCHVGADAXXXXXXXXXXDRACSGGGSLATVTSTGGVHVWGVPTLEGVGAEGSGAELTVPLLSTHSLKGEPRFTCVTACLCGDVTEPAPGKS 391
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig7.14617.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G200_ECTSI1.420e-5072.18Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig7contigC-linearis_contig7:3783513..3784979 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score182.6
Seed ortholog evalue1.9e-43
Seed eggNOG ortholog2880.D7G200
Preferred namePAK1IP1
KEGG koko:K11684,ko:K14830,ko:K18272
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0000460,GO:0000463,GO:0000466,GO:0000470,GO:0001932,GO:0001933,GO:0003674,GO:0004857,GO:0004860,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006469,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008283,GO:0009892,GO:0009966,GO:0009987,GO:0010467,GO:0010563,GO:0010605,GO:0010646,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0019207,GO:0019210,GO:0019220,GO:0019222,GO:0019887,GO:0022607,GO:0022613,GO:0022618,GO:0023051,GO:0030234,GO:0030684,GO:0030685,GO:0031323,GO:0031324,GO:0031399,GO:0031400,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032502,GO:0032886,GO:0032956,GO:0032970,GO:0032991,GO:0033043,GO:0033673,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0042254,GO:0042255,GO:0042273,GO:0042325,GO:0042326,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043549,GO:0043933,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0045859,GO:0045936,GO:0046483,GO:0048519,GO:0048523,GO:0048583,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0051128,GO:0051171,GO:0051172,GO:0051174,GO:0051246,GO:0051248,GO:0051338,GO:0051348,GO:0051493,GO:0060021,GO:0060255,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070507,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0098772,GO:1901360,GO:1901796,GO:1902531,GO:1990904
EggNOG free text desc.ribosomal large subunit biogenesis
EggNOG OGsKOG0294@1,KOG0294@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009,ko03036,ko04147
Exons3
Model size609
Cds size606
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig7.14617.1prot_C-linearis_contig7.14617.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig7 3783514..3784979 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930332.1550033-CDS-C-linearis_contig7:3783513..37838011622930332.1550033-CDS-C-linearis_contig7:3783513..3783801Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 3783514..3783801 -
1690881016.594825-CDS-C-linearis_contig7:3783513..37838011690881016.594825-CDS-C-linearis_contig7:3783513..3783801Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 3783514..3783801 -
1622930332.1747386-CDS-C-linearis_contig7:3784278..37845181622930332.1747386-CDS-C-linearis_contig7:3784278..3784518Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 3784279..3784518 -
1690881016.6078072-CDS-C-linearis_contig7:3784278..37845181690881016.6078072-CDS-C-linearis_contig7:3784278..3784518Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 3784279..3784518 -
1622930332.1977198-CDS-C-linearis_contig7:3784901..37849791622930332.1977198-CDS-C-linearis_contig7:3784901..3784979Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 3784902..3784979 -
1690881016.6176443-CDS-C-linearis_contig7:3784901..37849791690881016.6176443-CDS-C-linearis_contig7:3784901..3784979Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 3784902..3784979 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig7.14617.1

>prot_C-linearis_contig7.14617.1 ID=prot_C-linearis_contig7.14617.1|Name=mRNA_C-linearis_contig7.14617.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=202bp
GGGVVVATCADDKTIRFFRVDGATFLGKLDVSGVCTTGRIRDMCYVEAAN
DGGGGGVDGGGSEGSLVTVTSAGGVHVWGVPALEGVGTEGAGAELKMPLL
ATHSLKGEPRFTCVTACLSGEISEPAPGKSKNSKKRKPRQQQQQQQQTAG
EGEGDRPEEGGQTDGNPGEGTSKSSKKKKKSKRKKAREVQLQSSVGDDAG
AG
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mRNA from alignment at C-linearis_contig7:3783513..3784979-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig7.14617.1 ID=mRNA_C-linearis_contig7.14617.1|Name=mRNA_C-linearis_contig7.14617.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1467bp|location=Sequence derived from alignment at C-linearis_contig7:3783513..3784979- (Chordaria linearis ClinC8C monoicous)
GGGGGTGGGGTGGTGGTGGCCACGTGCGCCGACGATAAGACCATCCGCTT
CTTCCGGGTGGACGGTGCCACATTTCTGGTAAGCGTCAGTGGCGTTTGTG
GTCGTGATTTATATTTTTATTGTTTTTCAGTTGAAGGCTAAGGCTAAACT
ACGAATAAGGGCTGGGTACAAGTTTTTTTTTTTGTTTGGCGTGGATCGAG
GCAACGGTGGTCCTCCGTGCAGAAAGCGATGCAACCAGGCAGCCCAATCG
CCAGATCGATTGTGTGGAACGCAACGCGAGTATCCTCGAAATCCTTTCTC
TCATGTTCCTAGTTTTGCGTCTTGTATTCTACCCCAAATATAGTAGCCGT
GTGACGGTCTCTGTCTCCTTTAGAGCATGGCATCAGTGAGTTGCCGCCAA
CACCATCTTGTTCCTCCTCTTCTTCCCCAACCCCCCGCAACGATTACCGC
TTGGCTTGCAGGGCAAGCTAGATGTCAGCGGTGTGTGTACGACAGGGCGC
ATACGGGACATGTGCTACGTCGAGGCGGCGAACGACGGCGGCGGGGGCGG
CGTAGACGGTGGCGGCTCGGAGGGCTCTCTGGTGACAGTGACATCCGCGG
GAGGGGTGCACGTCTGGGGCGTTCCCGCGTTAGAAGGCGTCGGCACGGAG
GGGGCGGGAGCGGAGTTGAAGATGCCGCTGCTGGCGACGCACTCTTTGAA
GGTTGGTCGGGGATGGGGCGGTGACACCACGTCTGCTGTTTCTTGGTTTC
ACTGCGTTCTTCGGGGTGTTTGATCAATGGGGTGGTGGCAAAGCAAGGAT
TTCGTCGATGACTACGATCTCGCCGTATCATCACTTTCCTATTTTTTGGT
GCTTGTAATGGTGGGGGGCAAGCCATCACACATACGTAGGTTGTAGTAAT
GTTGCGTCATTCGGGGTTATCGCTCGTCTCCTTCCTTGAGCGGAGCGTTT
CCTTGCTGGCGGTTGCCATGCATCATACTCCTGGATACTCGGAACAATCC
CATTCGCTTCATCCCCACGTCGTGATTGTCAGGTAGAGCTTGGTTTTTTC
TTTTTTTCGCGTCTTGGGCCTTCCTTTACGAGACAATACAGAAGTTGGGT
GCTGTTTCCCTCTCAACCCTGACCCCGAGTAGTTGACAAGATGTAAAACG
ACCCTCTCAACGTCGTATTTTCACGCAGGGGGAGCCTAGATTCACGTGCG
TGACGGCCTGTCTGAGCGGAGAAATCTCGGAGCCGGCCCCTGGCAAGAGC
AAGAACTCCAAGAAGCGAAAACCGCGCCAGCAGCAGCAGCAGCAGCAGCA
GACAGCCGGTGAAGGCGAGGGAGACCGGCCAGAAGAGGGGGGGCAAACAG
ATGGGAACCCTGGGGAGGGCACGAGCAAAAGCAGCAAGAAGAAAAAGAAG
TCGAAGCGCAAGAAGGCGAGGGAGGTGCAGCTGCAAAGCTCTGTCGGGGA
TGATGCTGGGGCGGGAG
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Coding sequence (CDS) from alignment at C-linearis_contig7:3783513..3784979-

>mRNA_C-linearis_contig7.14617.1 ID=mRNA_C-linearis_contig7.14617.1|Name=mRNA_C-linearis_contig7.14617.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1212bp|location=Sequence derived from alignment at C-linearis_contig7:3783513..3784979- (Chordaria linearis ClinC8C monoicous)
GGGGGTGGGGTGGTGGTGGCCACGTGCGCCGACGATAAGACCATCCGCTT
CTTCCGGGTGGACGGTGCCACATTTCTGGGGGGTGGGGTGGTGGTGGCCA
CGTGCGCCGACGATAAGACCATCCGCTTCTTCCGGGTGGACGGTGCCACA
TTTCTGGGCAAGCTAGATGTCAGCGGTGTGTGTACGACAGGGCGCATACG
GGACATGTGCTACGTCGAGGCGGCGAACGACGGCGGCGGGGGCGGCGTAG
ACGGTGGCGGCTCGGAGGGCTCTCTGGTGACAGTGACATCCGCGGGAGGG
GTGCACGTCTGGGGCGTTCCCGCGTTAGAAGGCGTCGGCACGGAGGGGGC
GGGAGCGGAGTTGAAGATGCCGCTGCTGGCGACGCACTCTTTGAAGGGCA
AGCTAGATGTCAGCGGTGTGTGTACGACAGGGCGCATACGGGACATGTGC
TACGTCGAGGCGGCGAACGACGGCGGCGGGGGCGGCGTAGACGGTGGCGG
CTCGGAGGGCTCTCTGGTGACAGTGACATCCGCGGGAGGGGTGCACGTCT
GGGGCGTTCCCGCGTTAGAAGGCGTCGGCACGGAGGGGGCGGGAGCGGAG
TTGAAGATGCCGCTGCTGGCGACGCACTCTTTGAAGGGGGAGCCTAGATT
CACGTGCGTGACGGCCTGTCTGAGCGGAGAAATCTCGGAGCCGGCCCCTG
GCAAGAGCAAGAACTCCAAGAAGCGAAAACCGCGCCAGCAGCAGCAGCAG
CAGCAGCAGACAGCCGGTGAAGGCGAGGGAGACCGGCCAGAAGAGGGGGG
GCAAACAGATGGGAACCCTGGGGAGGGCACGAGCAAAAGCAGCAAGAAGA
AAAAGAAGTCGAAGCGCAAGAAGGCGAGGGAGGTGCAGCTGCAAAGCTCT
GTCGGGGATGATGCTGGGGCGGGAGGGGAGCCTAGATTCACGTGCGTGAC
GGCCTGTCTGAGCGGAGAAATCTCGGAGCCGGCCCCTGGCAAGAGCAAGA
ACTCCAAGAAGCGAAAACCGCGCCAGCAGCAGCAGCAGCAGCAGCAGACA
GCCGGTGAAGGCGAGGGAGACCGGCCAGAAGAGGGGGGGCAAACAGATGG
GAACCCTGGGGAGGGCACGAGCAAAAGCAGCAAGAAGAAAAAGAAGTCGA
AGCGCAAGAAGGCGAGGGAGGTGCAGCTGCAAAGCTCTGTCGGGGATGAT
GCTGGGGCGGGA
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