mRNA_C-linearis_contig7.14587.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig7.14587.1
Unique NamemRNA_C-linearis_contig7.14587.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig7.14587.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig7contigC-linearis_contig7:3537799..3539192 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size354
Cds size270
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig7.14587.1prot_C-linearis_contig7.14587.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig7 3537799..3539110 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930276.0887153-CDS-C-linearis_contig7:3537798..35379261622930276.0887153-CDS-C-linearis_contig7:3537798..3537926Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 3537799..3537926 +
1690880988.356714-CDS-C-linearis_contig7:3537798..35379261690880988.356714-CDS-C-linearis_contig7:3537798..3537926Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 3537799..3537926 +
1622930276.1036077-CDS-C-linearis_contig7:3538968..35391101622930276.1036077-CDS-C-linearis_contig7:3538968..3539110Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 3538969..3539110 +
1690880988.367505-CDS-C-linearis_contig7:3538968..35391101690880988.367505-CDS-C-linearis_contig7:3538968..3539110Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 3538969..3539110 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930276.1182075-UTR-C-linearis_contig7:3539110..35391921622930276.1182075-UTR-C-linearis_contig7:3539110..3539192Chordaria linearis ClinC8C monoicousUTRC-linearis_contig7 3539111..3539192 +
1690880988.378569-UTR-C-linearis_contig7:3539110..35391921690880988.378569-UTR-C-linearis_contig7:3539110..3539192Chordaria linearis ClinC8C monoicousUTRC-linearis_contig7 3539111..3539192 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig7.14587.1

>prot_C-linearis_contig7.14587.1 ID=prot_C-linearis_contig7.14587.1|Name=mRNA_C-linearis_contig7.14587.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=90bp
RTQQAEIERWRECARVGCVYFNACSFDQQIAALRYTKDKLSRSCVRDQAH
FCCCSTHEQNRRQAGEEEGQNLTTAVLLECETRAKEEKT*
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mRNA from alignment at C-linearis_contig7:3537799..3539192+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig7.14587.1 ID=mRNA_C-linearis_contig7.14587.1|Name=mRNA_C-linearis_contig7.14587.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1394bp|location=Sequence derived from alignment at C-linearis_contig7:3537799..3539192+ (Chordaria linearis ClinC8C monoicous)
CGCACGCAGCAGGCAGAGATAGAGAGGTGGCGTGAGTGCGCTCGTGTGGG
CTGTGTCTACTTCAACGCATGCTCCTTTGACCAACAGATTGCTGCATTGA
GATACACCAAAGATAAGCTCTCGCGCAGGTACGACGACCCAGGAAAATAG
AGTCGTTGCCGAGAGCAGCTCGCTCTTTAGGACCGCCTTGCTGCTTGTGT
GGTGCGGTGGTAGCGGTGCTAGAGACAAACCCACAGCCATGTTTATTTCT
TTTTTGGGGTGTCTCGCCTGTCGATCGGATTCGGCTGTCTTCCAACGGCA
GGGTTCTAAATTTGAACGCAGGCTGTTTGCGGCTCGCAGAGTAGAACATG
AACCAGCATTGATCTTTGGCCCCAACGTGCAGGCAACATAGATCCAGACA
ATGCGAAACACCAACCTCCCGCGCTTCGGAAGTACTCTGTGAAAGTTTTG
GCGGCCAGTCTGTGTAGACTGCAGGTAGAGGCTTTGCCGTCCGGTCGATG
CTTATGCTTCAGCTACGGAGTATGTTCCCCCTGGTATTTCAAACCTCCTC
CCGAAGACTTTTCAAGATAGAATCAACGCCATCGTACAGTCTAGTCTACT
GCTATCGTCTACACTCTCGTAGTAGGTTGTGTGTGCGTGTTTTCGTCCCA
TTTATTTTGGCGACAGTCCCTTTCCGATCAAGGCGAGACGTGTACTACAC
GTTGCGGTGTATTTAGAGTACTAGACTGCACTTGTTGAGTGTATGTTTCT
GTACAACTAGAACCAACCGGGGTCACACAGGAGGGGGTAAACACTGGGGC
TTTTTTCTTCTTTTTCTGTTTCTTTTTTGCCCCACCTTCCTCCTGCGGTG
CTTGCCTTGGATTTTATCGCGAGAAGGGTGCAGCCGTCCCTTTCCCTCGT
CAACGTGCTAACTCGAAGTTTGGTACTCATGAGCTTTTTCAGCTATGTTA
TCGCTTTCACCGGCAAAGTCGCAAAATAATCACCTTTGCTTGGAATTGAA
CTCCAGACTTTGCTGCTAGTGGGTTCGAGGTTAAACCACTAGGCCACCGG
GGCGACCGGCCATAGGTATAGATACCTCTAAACAACGTCAACATCAGCAT
CACCACCGCCCCCAAAGACCATGACCGACTTGCCCTCTTCCGACCTTTCA
CCCGCCACCTTCGCCTGCAGTTGCGTGCGCGACCAGGCGCATTTCTGCTG
CTGTTCCACACACGAACAAAACCGACGACAGGCAGGAGAAGAGGAAGGAC
AAAACCTCACTACAGCAGTACTGCTGGAGTGCGAGACACGGGCAAAAGAA
GAGAAAACTTGACGGTACATAGCGGGGACCGAGGCCTAACGCAAATCGCC
TCGCCTTGCCTTGCCTTGCCTTGCCCTGCAGCGGCGGGCGGGGG
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Coding sequence (CDS) from alignment at C-linearis_contig7:3537799..3539192+

>mRNA_C-linearis_contig7.14587.1 ID=mRNA_C-linearis_contig7.14587.1|Name=mRNA_C-linearis_contig7.14587.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=540bp|location=Sequence derived from alignment at C-linearis_contig7:3537799..3539192+ (Chordaria linearis ClinC8C monoicous)
CGCACGCAGCAGGCAGAGATAGAGAGGTGGCGTGAGTGCGCTCGTGTGGG
CTGTGTCTACTTCAACGCATGCTCCTTTGACCAACAGATTGCTGCATTGA
GATACACCAAAGATAAGCTCTCGCGCAGCGCACGCAGCAGGCAGAGATAG
AGAGGTGGCGTGAGTGCGCTCGTGTGGGCTGTGTCTACTTCAACGCATGC
TCCTTTGACCAACAGATTGCTGCATTGAGATACACCAAAGATAAGCTCTC
GCGCAGTTGCGTGCGCGACCAGGCGCATTTCTGCTGCTGTTCCACACACG
AACAAAACCGACGACAGGCAGGAGAAGAGGAAGGACAAAACCTCACTACA
GCAGTACTGCTGGAGTGCGAGACACGGGCAAAAGAAGAGAAAACTTGATT
GCGTGCGCGACCAGGCGCATTTCTGCTGCTGTTCCACACACGAACAAAAC
CGACGACAGGCAGGAGAAGAGGAAGGACAAAACCTCACTACAGCAGTACT
GCTGGAGTGCGAGACACGGGCAAAAGAAGAGAAAACTTGA
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